BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0016.0001.p (296 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767117.1| diaminopimelate epimerase [Bradyrhizobium japon... 524 e-147 ref|YP_001236565.1| diaminopimelate epimerase [Bradyrhizobium sp... 500 e-140 ref|YP_001202577.1| diaminopimelate epimerase [Bradyrhizobium sp... 492 e-137 ref|YP_319381.1| diaminopimelate epimerase [Nitrobacter winograd... 488 e-136 ref|YP_578764.1| diaminopimelate epimerase [Nitrobacter hamburge... 484 e-135 >ref|NP_767117.1| diaminopimelate epimerase [Bradyrhizobium japonicum USDA 110] sp|Q89X45.1|DAPF_BRAJA RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase dbj|BAC45742.1| diaminopimelate epimerase [Bradyrhizobium japonicum USDA 110] Length = 291 Score = 524 bits (1350), Expect = e-147, Method: Compositional matrix adjust. Identities = 263/293 (89%), Positives = 273/293 (93%), Gaps = 5/293 (1%) Query: 1 MSALANHAFAKMNGIGNEIVVVDLRDSEAAQGRAQVSAAEARAVASPAGGVPYDQLMVLQ 60 MSALANHAFAKMNGIGNEIVVVD+RDS A +V+ +ARAVAS GGVPYDQLMVLQ Sbjct: 1 MSALANHAFAKMNGIGNEIVVVDMRDSTA-----KVTPDDARAVASAQGGVPYDQLMVLQ 55 Query: 61 PPRLDGTEAFISIYNNDGSEAGACGNGMRCVVRRIFEKTGQTSATFQTRAGLLNCWQGPA 120 PRLDGTEAFISIYNNDGSEAGACGNGMRCVVRRIFEKTGQ +ATF+T AGLLN WQGPA Sbjct: 56 KPRLDGTEAFISIYNNDGSEAGACGNGMRCVVRRIFEKTGQATATFETAAGLLNAWQGPA 115 Query: 121 PDLYTVDMGAPKFGWQDIPLAEEFRDTRYIELQVGPIDNPVLHSPSVVSMGNPHAIFWVD 180 PDLYTVDMG PKFGWQDIPLAEEFRDTRYIELQ+GPIDNP+LHSPSVVSMGNPHAIFWVD Sbjct: 116 PDLYTVDMGVPKFGWQDIPLAEEFRDTRYIELQIGPIDNPILHSPSVVSMGNPHAIFWVD 175 Query: 181 DVNAYDLERFGPLLENHPIFPERANITLARIVDRDHITIRTWERGAGLTKACGSAACATA 240 DVNAYDL RFGPLLENHPIFPERANITLA IVDRDHITIRTWERGAGLT+ACGSAACATA Sbjct: 176 DVNAYDLARFGPLLENHPIFPERANITLAHIVDRDHITIRTWERGAGLTRACGSAACATA 235 Query: 241 VAAARLKRANRSVEITLPGGKLGIEWRERDDHVLMTGTADFEYEGRFDPALFA 293 VAAARLKRA R+VEITLPGGKLGIEWRERDDHVLMTGTA FEYEG FDPALFA Sbjct: 236 VAAARLKRAERNVEITLPGGKLGIEWRERDDHVLMTGTATFEYEGNFDPALFA 288 >ref|YP_001236565.1| diaminopimelate epimerase [Bradyrhizobium sp. BTAi1] sp|A5E915.1|DAPF_BRASB RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gb|ABQ32659.1| diaminopimelate epimerase [Bradyrhizobium sp. BTAi1] Length = 289 Score = 500 bits (1288), Expect = e-140, Method: Compositional matrix adjust. Identities = 251/297 (84%), Positives = 272/297 (91%), Gaps = 9/297 (3%) Query: 1 MSALANHAFAKMNGIGNEIVVVDLRDSEAAQGRAQVSAAEARAVASPAGGVPYDQLMVLQ 60 MSALANH+F KMNGIGNEIVV+DLRD + V+ EARAVA+ VPYDQLMVLQ Sbjct: 1 MSALANHSFVKMNGIGNEIVVLDLRDVKHV-----VTPDEARAVAA---RVPYDQLMVLQ 52 Query: 61 PPRLDGTEAFISIYNNDGSEAGACGNGMRCVVRRIFEKTGQTSATFQTRAGLLNCWQGPA 120 PPRLDGTEAFI IYNNDGSE+GACGNGMRCVVR++FEKTGQ SATF+TRAGLLNCWQGPA Sbjct: 53 PPRLDGTEAFIRIYNNDGSESGACGNGMRCVVRQVFEKTGQASATFETRAGLLNCWQGPA 112 Query: 121 PDLYTVDMGAPKFGWQDIPLAEEFRDTRYIELQVGPIDNPVLHSPSVVSMGNPHAIFWVD 180 PDLYTVDMG PKFGWQ+IPLAEEFRDTRYIELQ+GPID P+LHSPSVV+MGNPHA+FWVD Sbjct: 113 PDLYTVDMGVPKFGWQEIPLAEEFRDTRYIELQIGPIDAPILHSPSVVNMGNPHAVFWVD 172 Query: 181 -DVNAYDLERFGPLLENHPIFPERANITLARIVDRDHITIRTWERGAGLTKACGSAACAT 239 DVN+YDLERFGPLLENHPIFPERANITLA IVDRDHIT+RTWERGAGLTKACGSAACAT Sbjct: 173 GDVNSYDLERFGPLLENHPIFPERANITLAHIVDRDHITMRTWERGAGLTKACGSAACAT 232 Query: 240 AVAAARLKRANRSVEITLPGGKLGIEWRERDDHVLMTGTADFEYEGRFDPALFASVA 296 AVAAARLKRANR V++TLPGG+L IEWRERDDHVLMTGTA FE+EGRF+P LFASVA Sbjct: 233 AVAAARLKRANRIVQMTLPGGELTIEWRERDDHVLMTGTATFEFEGRFEPQLFASVA 289 >ref|YP_001202577.1| diaminopimelate epimerase [Bradyrhizobium sp. ORS 278] sp|A4YKA5.1|DAPF_BRASO RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase emb|CAL74331.1| diaminopimelate epimerase [Bradyrhizobium sp. ORS 278] Length = 289 Score = 492 bits (1267), Expect = e-137, Method: Compositional matrix adjust. Identities = 248/297 (83%), Positives = 269/297 (90%), Gaps = 9/297 (3%) Query: 1 MSALANHAFAKMNGIGNEIVVVDLRDSEAAQGRAQVSAAEARAVASPAGGVPYDQLMVLQ 60 MS LANH+F KMNGIGNEIVV+DLRD + V+ EARAVAS VPYDQ+MVLQ Sbjct: 1 MSPLANHSFVKMNGIGNEIVVLDLRDVKHV-----VTPDEARAVAS---RVPYDQMMVLQ 52 Query: 61 PPRLDGTEAFISIYNNDGSEAGACGNGMRCVVRRIFEKTGQTSATFQTRAGLLNCWQGPA 120 PR DGTEAFI IYNNDGSE+GACGNGMRCVV ++F KTGQTSATF+TRAGLLNCWQGPA Sbjct: 53 RPRFDGTEAFIRIYNNDGSESGACGNGMRCVVSQVFGKTGQTSATFETRAGLLNCWQGPA 112 Query: 121 PDLYTVDMGAPKFGWQDIPLAEEFRDTRYIELQVGPIDNPVLHSPSVVSMGNPHAIFWVD 180 PDLYTVDMG P+FGWQDIPLAEEFRDTRYIELQ+GPID P+LHSPSVVSMGNPHA+FWVD Sbjct: 113 PDLYTVDMGVPRFGWQDIPLAEEFRDTRYIELQIGPIDAPILHSPSVVSMGNPHAVFWVD 172 Query: 181 -DVNAYDLERFGPLLENHPIFPERANITLARIVDRDHITIRTWERGAGLTKACGSAACAT 239 DVN+YDLERFGPLLENHPIFPERANITLA+IVDRDHIT+RTWERGAGLT+ACGSAACAT Sbjct: 173 NDVNSYDLERFGPLLENHPIFPERANITLAQIVDRDHITMRTWERGAGLTRACGSAACAT 232 Query: 240 AVAAARLKRANRSVEITLPGGKLGIEWRERDDHVLMTGTADFEYEGRFDPALFASVA 296 AVAAARLKRANR V +TLPGG+L IEWRERDDHVLMTGTA FE+EGRF+PALFASVA Sbjct: 233 AVAAARLKRANRLVHMTLPGGELTIEWRERDDHVLMTGTATFEFEGRFEPALFASVA 289 >ref|YP_319381.1| diaminopimelate epimerase [Nitrobacter winogradskyi Nb-255] gb|ABA06029.1| diaminopimelate epimerase [Nitrobacter winogradskyi Nb-255] Length = 297 Score = 488 bits (1257), Expect = e-136, Method: Compositional matrix adjust. Identities = 247/296 (83%), Positives = 264/296 (89%), Gaps = 6/296 (2%) Query: 1 MSALANHAFAKMNGIGNEIVVVDLRDSEAAQGRAQVSAAEARAVASPAGGVPYDQLMVLQ 60 MS LANHAF+KMNGIGNEIVVVDLRD+ A V+A EARAVASP GGVPYDQLMVLQ Sbjct: 8 MSVLANHAFSKMNGIGNEIVVVDLRDNPAT-----VTAGEARAVASP-GGVPYDQLMVLQ 61 Query: 61 PPRLDGTEAFISIYNNDGSEAGACGNGMRCVVRRIFEKTGQTSATFQTRAGLLNCWQGPA 120 PPR GTEAF+ IYNNDGSEA ACGNGMRCV R+IFE T +T+ TF+TRAGLLNCW+G A Sbjct: 62 PPRTPGTEAFVRIYNNDGSEANACGNGMRCVARQIFEATDKTALTFETRAGLLNCWRGSA 121 Query: 121 PDLYTVDMGAPKFGWQDIPLAEEFRDTRYIELQVGPIDNPVLHSPSVVSMGNPHAIFWVD 180 P LY+VDMG+PKFGW+DIPLAEEFRDTRYIELQVGPID PVLHSPSVVSMGNPHAIFWVD Sbjct: 122 PGLYSVDMGSPKFGWKDIPLAEEFRDTRYIELQVGPIDAPVLHSPSVVSMGNPHAIFWVD 181 Query: 181 DVNAYDLERFGPLLENHPIFPERANITLARIVDRDHITIRTWERGAGLTKACGSAACATA 240 D++AYDL RFGPLLENHP+FPERANITLA IVDRDHIT+RTWERGAGLTKACGSAACATA Sbjct: 182 DIHAYDLARFGPLLENHPVFPERANITLAHIVDRDHITMRTWERGAGLTKACGSAACATA 241 Query: 241 VAAARLKRANRSVEITLPGGKLGIEWRERDDHVLMTGTADFEYEGRFDPALFASVA 296 VAAARLKR R V +TLPGG L IEWRERDDHVLMTG A FEYEG FDPALFASVA Sbjct: 242 VAAARLKRVERIVHMTLPGGSLTIEWRERDDHVLMTGPAIFEYEGAFDPALFASVA 297 >ref|YP_578764.1| diaminopimelate epimerase [Nitrobacter hamburgensis X14] sp|Q1QHJ3.1|DAPF_NITHX RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase gb|ABE64304.1| diaminopimelate epimerase [Nitrobacter hamburgensis X14] Length = 290 Score = 484 bits (1247), Expect = e-135, Method: Compositional matrix adjust. Identities = 247/296 (83%), Positives = 263/296 (88%), Gaps = 6/296 (2%) Query: 1 MSALANHAFAKMNGIGNEIVVVDLRDSEAAQGRAQVSAAEARAVASPAGGVPYDQLMVLQ 60 M LANHAF+KMNGIGNEIVVVDLRD AA V+A EARAVASP GGVPYDQLMVLQ Sbjct: 1 MGTLANHAFSKMNGIGNEIVVVDLRDRPAA-----VTAEEARAVASP-GGVPYDQLMVLQ 54 Query: 61 PPRLDGTEAFISIYNNDGSEAGACGNGMRCVVRRIFEKTGQTSATFQTRAGLLNCWQGPA 120 PPRL GTEAF+SIYNNDGSEA ACGNGMRCV R++FE TG+ + TF+TRAGLL+CWQGPA Sbjct: 55 PPRLPGTEAFVSIYNNDGSEANACGNGMRCVARQVFEATGKAALTFETRAGLLSCWQGPA 114 Query: 121 PDLYTVDMGAPKFGWQDIPLAEEFRDTRYIELQVGPIDNPVLHSPSVVSMGNPHAIFWVD 180 P LYTVDMG PKFGW+DIPLAEEFRDTRYIELQVGPID PVLHSPSVVSMGNPHAIFWVD Sbjct: 115 PGLYTVDMGPPKFGWRDIPLAEEFRDTRYIELQVGPIDAPVLHSPSVVSMGNPHAIFWVD 174 Query: 181 DVNAYDLERFGPLLENHPIFPERANITLARIVDRDHITIRTWERGAGLTKACGSAACATA 240 DVNA+DLERFGPLLENHPIFPERANITLA I RD I +RTWERGAG+TKACGSAACATA Sbjct: 175 DVNAHDLERFGPLLENHPIFPERANITLAHIAGRDRIVMRTWERGAGMTKACGSAACATA 234 Query: 241 VAAARLKRANRSVEITLPGGKLGIEWRERDDHVLMTGTADFEYEGRFDPALFASVA 296 VAAARLKRA+R V++ LPGG L IEWRERDDHVLMTG A FEY G FDPALFASVA Sbjct: 235 VAAARLKRADRVVDMVLPGGGLTIEWRERDDHVLMTGPAVFEYAGTFDPALFASVA 290