BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0006.p (154 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_07028247.1| ribosomal protein L13 [Afipia sp. 1NLS2] >gi|... 297 4e-79 ref|ZP_08630117.1| LSU ribosomal protein L13p [Bradyrhizobiaceae... 294 3e-78 ref|YP_002288884.1| ribosomal protein L13 [Oligotropha carboxido... 290 5e-77 ref|NP_948110.1| 50S ribosomal protein L13 [Rhodopseudomonas pal... 286 6e-76 ref|YP_001206194.1| 50S ribosomal protein L13 [Bradyrhizobium sp... 286 8e-76 >ref|ZP_07028247.1| ribosomal protein L13 [Afipia sp. 1NLS2] gb|EFI50237.1| ribosomal protein L13 [Afipia sp. 1NLS2] Length = 154 Score = 297 bits (760), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 141/154 (91%), Positives = 147/154 (95%) Query: 1 MSTFSAKPAEVTKKWVVIDAKGLVVGRLATLVAMRLRGKHLPTYTPHVDCGDNVIIVNAA 60 M TFSAKPAEV KKWV+IDAKGLVVGRLATLVAMRLRGKHLPTYTPHVDCGDNVII+NAA Sbjct: 1 MKTFSAKPAEVNKKWVIIDAKGLVVGRLATLVAMRLRGKHLPTYTPHVDCGDNVIIINAA 60 Query: 61 HVVLTGRKRDQKTYYKHTGFIGGIKERTAKQILEGRFPERVVEKAIERMIPRGPLGRMQM 120 HVVLTGRKRD K YY HTGFIGGIKER+AK ILEGRFPERVVEKAIERMIPRGPLGR+QM Sbjct: 61 HVVLTGRKRDNKVYYNHTGFIGGIKERSAKSILEGRFPERVVEKAIERMIPRGPLGRIQM 120 Query: 121 GNLRVYPGADHPHEAQSPEKVDIASLNRKNTRAA 154 GNLRVYPGA+HPHEAQ+PE VDIASLNRKNTRAA Sbjct: 121 GNLRVYPGAEHPHEAQNPEVVDIASLNRKNTRAA 154 >ref|ZP_08630117.1| LSU ribosomal protein L13p [Bradyrhizobiaceae bacterium SG-6C] gb|EGP07211.1| LSU ribosomal protein L13p [Bradyrhizobiaceae bacterium SG-6C] Length = 154 Score = 294 bits (753), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 140/154 (90%), Positives = 145/154 (94%) Query: 1 MSTFSAKPAEVTKKWVVIDAKGLVVGRLATLVAMRLRGKHLPTYTPHVDCGDNVIIVNAA 60 M +FSAKPAEV KKWV+IDAKGLVVGRLATLVAMRLRGKHLPTYTPHVDCGDNVII+NAA Sbjct: 1 MKSFSAKPAEVNKKWVLIDAKGLVVGRLATLVAMRLRGKHLPTYTPHVDCGDNVIIINAA 60 Query: 61 HVVLTGRKRDQKTYYKHTGFIGGIKERTAKQILEGRFPERVVEKAIERMIPRGPLGRMQM 120 HVVLTGRKRD K YY HTGFIGGIKER+AK ILEGRFPERVVEKAIERMIPRGPLGR+QM Sbjct: 61 HVVLTGRKRDNKMYYNHTGFIGGIKERSAKSILEGRFPERVVEKAIERMIPRGPLGRVQM 120 Query: 121 GNLRVYPGADHPHEAQSPEKVDIASLNRKNTRAA 154 GNLRVY GADHPHEAQ PE VDIASLNRKNTRAA Sbjct: 121 GNLRVYAGADHPHEAQQPETVDIASLNRKNTRAA 154 >ref|YP_002288884.1| ribosomal protein L13 [Oligotropha carboxidovorans OM5] ref|YP_004633068.1| 50S ribosomal protein L13 [Oligotropha carboxidovorans OM5] sp|B6JGT5.1|RL13_OLICO RecName: Full=50S ribosomal protein L13 gb|ACI93019.1| ribosomal protein L13 [Oligotropha carboxidovorans OM5] gb|AEI03250.1| 50S ribosomal protein L13 [Oligotropha carboxidovorans OM4] gb|AEI06827.1| 50S ribosomal protein L13 [Oligotropha carboxidovorans OM5] Length = 154 Score = 290 bits (742), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 137/154 (88%), Positives = 145/154 (94%) Query: 1 MSTFSAKPAEVTKKWVVIDAKGLVVGRLATLVAMRLRGKHLPTYTPHVDCGDNVIIVNAA 60 M TFSAKPAEV KKWV+IDAKGLVVGRLATLVAMRLRGKHLPTYTPHVDCGDNVI++NAA Sbjct: 1 MKTFSAKPAEVNKKWVIIDAKGLVVGRLATLVAMRLRGKHLPTYTPHVDCGDNVIVINAA 60 Query: 61 HVVLTGRKRDQKTYYKHTGFIGGIKERTAKQILEGRFPERVVEKAIERMIPRGPLGRMQM 120 VVLTGRKRD K YY HTGFIGGIKER+AK ILEGRFPERV+EKAIERMIPRGPLGR+QM Sbjct: 61 QVVLTGRKRDNKMYYNHTGFIGGIKERSAKSILEGRFPERVLEKAIERMIPRGPLGRIQM 120 Query: 121 GNLRVYPGADHPHEAQSPEKVDIASLNRKNTRAA 154 GNLRVY GA+HPHEAQ+PE VDIASLNRKNTRAA Sbjct: 121 GNLRVYAGAEHPHEAQNPEVVDIASLNRKNTRAA 154 >ref|NP_948110.1| 50S ribosomal protein L13 [Rhodopseudomonas palustris CGA009] ref|YP_001992087.1| 50S ribosomal protein L13 [Rhodopseudomonas palustris TIE-1] ref|YP_004109054.1| 50S ribosomal protein L13 [Rhodopseudomonas palustris DX-1] sp|Q6N651.1|RL13_RHOPA RecName: Full=50S ribosomal protein L13; AltName: Full=RRP-L13 sp|B3QKG3.1|RL13_RHOPT RecName: Full=50S ribosomal protein L13 emb|CAE28209.1| ribosomal protein L13 [Rhodopseudomonas palustris CGA009] gb|ACF01612.1| ribosomal protein L13 [Rhodopseudomonas palustris TIE-1] gb|ADU44321.1| ribosomal protein L13 [Rhodopseudomonas palustris DX-1] Length = 154 Score = 286 bits (732), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 135/154 (87%), Positives = 144/154 (93%) Query: 1 MSTFSAKPAEVTKKWVVIDAKGLVVGRLATLVAMRLRGKHLPTYTPHVDCGDNVIIVNAA 60 M TFSAKPAEVTKKWV+IDA GLVVGRLATLVAMRLRGKHLPTYTPHVDCGDNVII+NA+ Sbjct: 1 MKTFSAKPAEVTKKWVIIDATGLVVGRLATLVAMRLRGKHLPTYTPHVDCGDNVIIINAS 60 Query: 61 HVVLTGRKRDQKTYYKHTGFIGGIKERTAKQILEGRFPERVVEKAIERMIPRGPLGRMQM 120 VVLTGRKRD K YY HTGFIGGIKER+AK ILEGRFPERVVEKAIERMIPRGPLGR+QM Sbjct: 61 KVVLTGRKRDNKVYYHHTGFIGGIKERSAKAILEGRFPERVVEKAIERMIPRGPLGRVQM 120 Query: 121 GNLRVYPGADHPHEAQSPEKVDIASLNRKNTRAA 154 GNLRVYPGA+HPHEAQ PEK+DI ++NRKN RAA Sbjct: 121 GNLRVYPGAEHPHEAQQPEKLDIGAMNRKNMRAA 154 >ref|YP_001206194.1| 50S ribosomal protein L13 [Bradyrhizobium sp. ORS 278] ref|YP_001240527.1| 50S ribosomal protein L13 [Bradyrhizobium sp. BTAi1] sp|A5EKC7.1|RL13_BRASB RecName: Full=50S ribosomal protein L13 sp|A4YVP3.1|RL13_BRASO RecName: Full=50S ribosomal protein L13 emb|CAL77969.1| 50S ribosomal subunit protein L13 [Bradyrhizobium sp. ORS 278] gb|ABQ36621.1| LSU ribosomal protein L13P [Bradyrhizobium sp. BTAi1] Length = 154 Score = 286 bits (732), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 135/154 (87%), Positives = 144/154 (93%) Query: 1 MSTFSAKPAEVTKKWVVIDAKGLVVGRLATLVAMRLRGKHLPTYTPHVDCGDNVIIVNAA 60 M TFSAKPAEV KKWVVIDAKGLVVGRLATLVAMRLRGKHLP YTPHVDCGDNVIIVNA Sbjct: 1 MKTFSAKPAEVQKKWVVIDAKGLVVGRLATLVAMRLRGKHLPIYTPHVDCGDNVIIVNAK 60 Query: 61 HVVLTGRKRDQKTYYKHTGFIGGIKERTAKQILEGRFPERVVEKAIERMIPRGPLGRMQM 120 H V TGRKR+QKTYYKHTGF+G +KERTA+QILEGRFPERV+EKA+ERMIPRGPLGR+QM Sbjct: 61 HAVFTGRKREQKTYYKHTGFVGHVKERTARQILEGRFPERVLEKAVERMIPRGPLGRVQM 120 Query: 121 GNLRVYPGADHPHEAQSPEKVDIASLNRKNTRAA 154 GNLRVY G DHPHEAQ+PEK+DIA LNRKNTRAA Sbjct: 121 GNLRVYGGPDHPHEAQNPEKIDIAKLNRKNTRAA 154