BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0004.p (404 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_771601.1| hypothetical protein bll4961 [Bradyrhizobium ja... 513 e-143 ref|NP_948112.1| putative diguanylate cyclase [Rhodopseudomonas ... 452 e-125 ref|YP_001206192.1| putative diguanylate cyclase [Bradyrhizobium... 442 e-122 ref|ZP_08630115.1| hypothetical protein CSIRO_3217 [Bradyrhizobi... 441 e-121 ref|YP_486286.1| diguanylate cyclase [Rhodopseudomonas palustris... 439 e-121 >ref|NP_771601.1| hypothetical protein bll4961 [Bradyrhizobium japonicum USDA 110] dbj|BAC50226.1| bll4961 [Bradyrhizobium japonicum USDA 110] Length = 471 Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust. Identities = 252/344 (73%), Positives = 290/344 (84%), Gaps = 4/344 (1%) Query: 1 MSFDPSTLYLFATMVAGMLGAMLWLFGRQENISALKWWGTAYLLGAASVAVWTVGSSTLD 60 MS D TLYL ATMVA +LGAM+ FGRQEN ALKWWGTAYLLGAASVA+WT L Sbjct: 67 MSLDSITLYLVATMVAALLGAMMVFFGRQENSPALKWWGTAYLLGAASVALWTAAGDRLG 126 Query: 61 PMVLLGLNAIGFAACGLVWNAARIFHGRKASLLGLVLGPIAWIGAMTTVEDPA---MRLT 117 P + L LNA+GF ACG+VWNAAR+FHGRK + GLVLG +AW A+T + DPA +R+ Sbjct: 127 PHLYLALNAVGFVACGMVWNAARVFHGRKPNWPGLVLGALAWAAAVTLL-DPAASMLRMI 185 Query: 118 IGAGIVAIYAALTASELWSERRRAMQRRWLAIVIPVAHGCVLMLPILVGDLLRLNGQNFV 177 IGAGIV++YAALTASELW ERR+++QRRW A V+PV HGCVLMLPIL+G LR + F Sbjct: 186 IGAGIVSVYAALTASELWVERRKSLQRRWPAFVVPVMHGCVLMLPILLGSFLRPHDAGFS 245 Query: 178 SSFWVTLFSIELVLYAIGTVFVIFMMVSDRAVAVHKTAASIDPLSGMLNRRGFTEACARV 237 SS WVT+F++ELVLYA+GTVFVIFM+VS+RAV H+TAAS DPL+GMLNRRGF+EAC RV Sbjct: 246 SSIWVTVFAVELVLYAVGTVFVIFMLVSERAVTAHRTAASTDPLTGMLNRRGFSEACGRV 305 Query: 238 IERESVAGRPVTVMIFDIDHFKSINDRFGHPAGDEILKLFSAVVVNSLRISDLSGRIGGE 297 IERE+ AGRPVTVMIFDIDHFKSINDRFGHPAGDE+LKLFS VVV++LRI+D+SGRIGGE Sbjct: 306 IEREAKAGRPVTVMIFDIDHFKSINDRFGHPAGDEMLKLFSTVVVSNLRITDMSGRIGGE 365 Query: 298 EFAALLPCSLEEGVLVAERVREAFENSNITCEEGAVDTTVSIGV 341 EFAALLPCSLEEGVLVAERVREAFE S + +EG VDTTVSIGV Sbjct: 366 EFAALLPCSLEEGVLVAERVREAFETSGVVVDEGPVDTTVSIGV 409 >ref|NP_948112.1| putative diguanylate cyclase [Rhodopseudomonas palustris CGA009] ref|YP_001992089.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1] emb|CAE28211.1| putative diguanylate cyclase (GGDEF) [Rhodopseudomonas palustris CGA009] gb|ACF01614.1| diguanylate cyclase [Rhodopseudomonas palustris TIE-1] Length = 411 Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust. Identities = 217/343 (63%), Positives = 272/343 (79%), Gaps = 2/343 (0%) Query: 1 MSFDPSTLYLFATMVAGMLGAMLWLFGRQENISALKWWGTAYLLGAASVAVWTVGSSTLD 60 MS D STL+L AT++ +LG ML FGRQE + AL WWG AYLLGA +VA+WT+ S Sbjct: 1 MSLDISTLFLVATLICALLGVMLHYFGRQEKMPALNWWGNAYLLGAITVALWTILSPIFG 60 Query: 61 PMVLLGLNAIGFAACGLVWNAARIFHGRKASLLGLVLGPIAWIGAMTTV--EDPAMRLTI 118 + L + +IGF ACG++WNAAR+FHG K + GL LG +AW+ A+ ++ E A+R+TI Sbjct: 61 EAITLAMASIGFIACGMMWNAARVFHGLKPNWPGLFLGALAWLAAVASLPPEQEALRMTI 120 Query: 119 GAGIVAIYAALTASELWSERRRAMQRRWLAIVIPVAHGCVLMLPILVGDLLRLNGQNFVS 178 GA IVA YA LTAS+L +ERR++M RRW IV+P+ HG LMLPI++ DL F Sbjct: 121 GAAIVAAYAGLTASQLAAERRKSMHRRWPTIVVPLLHGAALMLPIVLADLWPSPHSGFAG 180 Query: 179 SFWVTLFSIELVLYAIGTVFVIFMMVSDRAVAVHKTAASIDPLSGMLNRRGFTEACARVI 238 + WV LF++ELVLYAIGTVFVIFM+VS+R+V++HKTAAS+DPL+GMLNRRGF+EACAR+I Sbjct: 181 NVWVVLFAVELVLYAIGTVFVIFMLVSERSVSLHKTAASLDPLTGMLNRRGFSEACARMI 240 Query: 239 ERESVAGRPVTVMIFDIDHFKSINDRFGHPAGDEILKLFSAVVVNSLRISDLSGRIGGEE 298 ERE++AGRPV+ +IFDIDHFKSINDRFGHPAGDE+LKLF+A+V NSLRISDLSGRIGGEE Sbjct: 241 EREAMAGRPVSALIFDIDHFKSINDRFGHPAGDEVLKLFAAIVTNSLRISDLSGRIGGEE 300 Query: 299 FAALLPCSLEEGVLVAERVREAFENSNITCEEGAVDTTVSIGV 341 FAALLPC ++E V A+RVREAF+N I ++ V TTVSIGV Sbjct: 301 FAALLPCPIDEAVTAADRVREAFQNCGIEVDDAPVATTVSIGV 343 >ref|YP_001206192.1| putative diguanylate cyclase [Bradyrhizobium sp. ORS 278] emb|CAL77967.1| putative diguanylate cyclase (GGDEF) [Bradyrhizobium sp. ORS 278] Length = 408 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 217/344 (63%), Positives = 273/344 (79%), Gaps = 5/344 (1%) Query: 1 MSFDPSTLYLFATMVAGMLGAMLWLFGRQENISALKWWGTAYLLGAASVAVWTVGSSTLD 60 M+ D TL + ATMVA +LGAML FGRQEN AL+WWG AY+LGA ++A+WT+ + + Sbjct: 1 MALDSLTLDIVATMVAALLGAMLLYFGRQENTPALRWWGAAYILGAVAIALWTLVADSYG 60 Query: 61 PMVLLGLNAIGFAACGLVWNAARIFHGRKASLLGLVLGPIAWIGAMTTVEDPA---MRLT 117 +V L L++IG A +VWNAAR+FHG+ S+ GL LG I WI A + DPA +RLT Sbjct: 61 EVVSLFLSSIGLIATAMVWNAARVFHGKSPSVTGLALGAIVWI-ASGMLLDPAAQALRLT 119 Query: 118 IGAGIVAIYAALTASELWSERRRAMQRRWLAIVIPVAHGCVLMLPILVGDLLRLNGQNFV 177 IGA IV IYA LTA+ELW ERRR +Q+RW A+++P HG VLMLPIL+G++LR F Sbjct: 120 IGAAIVVIYATLTAAELWQERRRTLQKRWPAVLVPAMHGFVLMLPILLGNMLRDANGAFA 179 Query: 178 SSFWVTLFSIELVLYAIGTVFVIFMMVSDRAVAVHKTAASIDPLSGMLNRRGFTEACARV 237 ++ WVT+FSIELVLYA+GTVFVIFM+VS+R V+ HK AA+ DPL+G+LNRRGF +ACA++ Sbjct: 180 AA-WVTIFSIELVLYAVGTVFVIFMLVSERIVSAHKRAATTDPLTGLLNRRGFADACAQL 238 Query: 238 IERESVAGRPVTVMIFDIDHFKSINDRFGHPAGDEILKLFSAVVVNSLRISDLSGRIGGE 297 IERE+ A +PV+V+IFDIDHFKSINDRFGH GDE+LK+F+ VVVN+LR++DLSGRIGGE Sbjct: 239 IEREARAQQPVSVLIFDIDHFKSINDRFGHAEGDEVLKIFADVVVNNLRLTDLSGRIGGE 298 Query: 298 EFAALLPCSLEEGVLVAERVREAFENSNITCEEGAVDTTVSIGV 341 EFAALLPCS+EE ++ AERVREAF S + CEE VDTTVSIGV Sbjct: 299 EFAALLPCSIEEAMVAAERVREAFAASGVVCEEKPVDTTVSIGV 342 >ref|ZP_08630115.1| hypothetical protein CSIRO_3217 [Bradyrhizobiaceae bacterium SG-6C] gb|EGP07209.1| hypothetical protein CSIRO_3217 [Bradyrhizobiaceae bacterium SG-6C] Length = 416 Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust. Identities = 210/343 (61%), Positives = 274/343 (79%), Gaps = 3/343 (0%) Query: 1 MSFDPSTLYLFATMVAGMLGAMLWLFGRQENISALKWWGTAYLLGAASVAVWTVGSSTLD 60 +S D STLYL AT+ A MLG +L F RQE I+AL WWG AY+LGAASVA+WT+G + L Sbjct: 7 LSLDISTLYLVATLAAAMLGVLLLFFWRQEKIAALGWWGAAYILGAASVALWTIGGAELG 66 Query: 61 PMVLLGLNAIGFAACGLVWNAARIFHGRKASLLGLVLGPIAWIGAMTTVE--DPAMRLTI 118 + L +NA+GF ACGL+W+AAR FHGR A+ +G++ GP W+ A+ + DP +R+ + Sbjct: 67 FELSLAVNAVGFIACGLMWDAARAFHGRPANWIGVIAGPALWVAAVVLFDPMDPEIRMML 126 Query: 119 GAGIVAIYAALTASELWSERRRAMQRRWLAIVIPVAHGCVLMLPILVGDLLRLNGQNFVS 178 GAGIVAIYA+LTA+ELW ERR++++ RW AI +PV HG VLMLPI++GD+ R G +S Sbjct: 127 GAGIVAIYASLTAAELWRERRKSLRARWPAIAVPVMHGAVLMLPIVMGDMFR-PGNAGMS 185 Query: 179 SFWVTLFSIELVLYAIGTVFVIFMMVSDRAVAVHKTAASIDPLSGMLNRRGFTEACARVI 238 WV F+ ELV+YA+GTVF+IFM+VS+R V HKTAAS+DPL+G+LNRRGF+EA +R+I Sbjct: 186 QVWVAAFAAELVIYAVGTVFIIFMLVSERTVTAHKTAASVDPLTGLLNRRGFSEATSRMI 245 Query: 239 ERESVAGRPVTVMIFDIDHFKSINDRFGHPAGDEILKLFSAVVVNSLRISDLSGRIGGEE 298 ERE+ AGRPVTVMIFDIDHFKS+NDRFGH GDE+L++F+ VVV SLRI+DL GR+GGEE Sbjct: 246 EREAKAGRPVTVMIFDIDHFKSVNDRFGHATGDEVLQVFANVVVASLRITDLVGRVGGEE 305 Query: 299 FAALLPCSLEEGVLVAERVREAFENSNITCEEGAVDTTVSIGV 341 FAALLPC+++E ++ AERVREAFE S + ++ ++TTVSIGV Sbjct: 306 FAALLPCAMDEALVAAERVREAFEASGVAIDDVPLETTVSIGV 348 >ref|YP_486286.1| diguanylate cyclase [Rhodopseudomonas palustris HaA2] gb|ABD07375.1| diguanylate cyclase [Rhodopseudomonas palustris HaA2] Length = 411 Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust. Identities = 213/343 (62%), Positives = 273/343 (79%), Gaps = 2/343 (0%) Query: 1 MSFDPSTLYLFATMVAGMLGAMLWLFGRQENISALKWWGTAYLLGAASVAVWTVGSSTLD 60 MS D STL L AT++ +LG ML FG QE I AL WWG AYL+GAA+VA W + S L Sbjct: 1 MSLDFSTLLLVATLICTLLGGMLLYFGTQEKIPALYWWGAAYLIGAATVAQWQLLGSVLP 60 Query: 61 PMVLLGLNAIGFAACGLVWNAARIFHGRKASLLGLVLGPIAWIGAMTTV--EDPAMRLTI 118 +V+L L + GF ACG++WNAAR+FHGR+ + GLVLG IAWI A+ + + ++R+T+ Sbjct: 61 ELVVLSLASAGFIACGMMWNAARVFHGRRPNWPGLVLGAIAWIAAVILLPPDSSSLRMTL 120 Query: 119 GAGIVAIYAALTASELWSERRRAMQRRWLAIVIPVAHGCVLMLPILVGDLLRLNGQNFVS 178 GAGIVAIYAALTA+EL+SERR+A+ RRW A+++P+ HG VLMLP+++ +LL + S Sbjct: 121 GAGIVAIYAALTANELFSERRKAVMRRWPAMLVPLLHGGVLMLPVVLAELLPARSNAYTS 180 Query: 179 SFWVTLFSIELVLYAIGTVFVIFMMVSDRAVAVHKTAASIDPLSGMLNRRGFTEACARVI 238 + WV +F+IELVLYAIGTVFV+FM+VS++ V+ HKTAA++DPL+G+ NRRGF+EA AR+I Sbjct: 181 NIWVLIFAIELVLYAIGTVFVVFMLVSEQTVSAHKTAAALDPLTGLFNRRGFSEATARMI 240 Query: 239 ERESVAGRPVTVMIFDIDHFKSINDRFGHPAGDEILKLFSAVVVNSLRISDLSGRIGGEE 298 ERE+ AGRPVTVMIFD+DHFKSINDRFGHPAGDE++KLF+A+V SLRISDL GRIGGEE Sbjct: 241 EREAEAGRPVTVMIFDLDHFKSINDRFGHPAGDEVIKLFAAIVSGSLRISDLCGRIGGEE 300 Query: 299 FAALLPCSLEEGVLVAERVREAFENSNITCEEGAVDTTVSIGV 341 FAALLPCS++E + AERVREAFE + + + TTVSIGV Sbjct: 301 FAALLPCSIDEAMTAAERVREAFEGCGLEVDGAPIATTVSIGV 343