BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0002.p (356 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001240520.1| putative transport protein/permease [Bradyrh... 500 e-139 ref|YP_001206187.1| putative transport protein/permease [Bradyrh... 499 e-139 ref|NP_771599.1| hypothetical protein blr4959 [Bradyrhizobium ja... 486 e-135 ref|YP_577487.1| hypothetical protein Nham_2235 [Nitrobacter ham... 475 e-132 ref|ZP_08630112.1| protein of unknown function UPF0118 [Bradyrhi... 442 e-122 >ref|YP_001240520.1| putative transport protein/permease [Bradyrhizobium sp. BTAi1] gb|ABQ36614.1| putative transport protein/permease [Bradyrhizobium sp. BTAi1] Length = 382 Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust. Identities = 258/378 (68%), Positives = 303/378 (80%), Gaps = 22/378 (5%) Query: 1 VTDSADHRLQARNDLAWAIAVGGIGVVLFAALLTFAWHFAX------------------- 41 +T AD RL+AR+DLAWAI VGGIGV+LFAA L F+W++A Sbjct: 1 MTAPADPRLEARSDLAWAITVGGIGVILFAATLAFSWYYAAALFLLFSGMLLGVALNAMT 60 Query: 42 --LGRLTKLPHALRLAIVCLAMAGLLSGIVFLGGTTIAQQATVLSNTIKSQLGSVKDFLE 99 LGR+ PH LRLA+VCL +A LL GIVFLGGTTIA QA VLS+TIKSQLG++K FL+ Sbjct: 61 SLLGRVLPWPHPLRLALVCLTLAALLVGIVFLGGTTIADQAKVLSDTIKSQLGNIKGFLD 120 Query: 100 QHGVDTSYLDFTNAAGEAKG-EGTAVTTTTTPPSSQSHGIPGAGALASSGGAIISQTLKV 158 ++G+DTS+ DF+ A +G + T T P S G+P ALASSGGAI+SQT K+ Sbjct: 121 RNGIDTSFFDFSAATQATPAPDGGSTTPTQAPSHSLPGGLPSPSALASSGGAIVSQTFKL 180 Query: 159 LLGTVSVVGNFFIVLFLGLAFAAQPSIYRAGLLFIAPAKYRAQATIIVDRIGETLERWLI 218 LLGTVS VGNFFIVLFLGLAFAAQP++YR+GLLF+APAKYR QAT+I+DRI TLERWLI Sbjct: 181 LLGTVSAVGNFFIVLFLGLAFAAQPAVYRSGLLFLAPAKYRDQATVIIDRISYTLERWLI 240 Query: 219 AQIITMTAVFLVTWIGLAIIGIPSSFILGIQAGLLAFIPTVGAILGGLIVVLASLATGWI 278 AQI TM AVFLVTWIGLA+IG+ SSFILGIQAGLLAFIPTVGAI+ G+IVVLASLA+GW+ Sbjct: 241 AQITTMFAVFLVTWIGLAVIGVQSSFILGIQAGLLAFIPTVGAIIAGVIVVLASLASGWV 300 Query: 279 AALSAFILFLGVHALESYVLTPIIQRQALDIPPATLFAFQILLGVVFGIWGLALALPLMA 338 AA+SAF+LFLGVHA+ESYVLTP+IQRQALDIPPATLFAFQILLG+VFG+WGL LALPLMA Sbjct: 301 AAVSAFVLFLGVHAMESYVLTPLIQRQALDIPPATLFAFQILLGIVFGVWGLTLALPLMA 360 Query: 339 IAKVMIDHFKTEEPARAA 356 IAKVMID+FK++ A Sbjct: 361 IAKVMIDYFKSDRSTEDA 378 >ref|YP_001206187.1| putative transport protein/permease [Bradyrhizobium sp. ORS 278] emb|CAL77962.1| putative transport protein/permease [Bradyrhizobium sp. ORS 278] Length = 392 Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust. Identities = 265/381 (69%), Positives = 306/381 (80%), Gaps = 28/381 (7%) Query: 1 VTDSADHRLQARNDLAWAIAVGGIGVVLFAALLTFAWHFAX------------------- 41 +T AD RLQAR+DLAWAI VGGIGV+LF A L F+W++A Sbjct: 11 MTAPADPRLQARSDLAWAITVGGIGVILFMAGLAFSWYYAAALFLLFSGMLLGVALNAMT 70 Query: 42 --LGRLTKLPHALRLAIVCLAMAGLLSGIVFLGGTTIAQQATVLSNTIKSQLGSVKDFLE 99 LGR+ PH LRLAIVCLA+A LL GIVFLGGTTIA QA VLS+TIKSQLG++K FL+ Sbjct: 71 TLLGRVLPWPHPLRLAIVCLALAALLVGIVFLGGTTIADQAKVLSDTIKSQLGNIKGFLD 130 Query: 100 QHGVDTSYLDFTNAAGEAKGEGTAVTTTTTPPSSQSHGIPGA----GALASSGGAIISQT 155 ++G+DTS+ DF NA +A +TTP S SHG+PG ALASSGGAI+SQT Sbjct: 131 RNGIDTSFFDF-NAGTQATSAPDG--GSTTPTQSTSHGLPGGLPSPSALASSGGAIVSQT 187 Query: 156 LKVLLGTVSVVGNFFIVLFLGLAFAAQPSIYRAGLLFIAPAKYRAQATIIVDRIGETLER 215 K+LLGTVS VGNFFIVLFLGLAFAAQP++YR+GLLF+APAKYR QAT+I+DRI TLER Sbjct: 188 FKLLLGTVSAVGNFFIVLFLGLAFAAQPAVYRSGLLFLAPAKYRDQATVIIDRISYTLER 247 Query: 216 WLIAQIITMTAVFLVTWIGLAIIGIPSSFILGIQAGLLAFIPTVGAILGGLIVVLASLAT 275 WLIAQI TM AVFLVTWIGLAIIG+ SSFILGIQAGLLAFIPTVGAI+ G+IVVLASLA+ Sbjct: 248 WLIAQITTMFAVFLVTWIGLAIIGVQSSFILGIQAGLLAFIPTVGAIIAGVIVVLASLAS 307 Query: 276 GWIAALSAFILFLGVHALESYVLTPIIQRQALDIPPATLFAFQILLGVVFGIWGLALALP 335 GW+AA+SAF+LFLGVHA+ESYVLTP+IQRQALDIPPATLFAFQILLG+VFG+WGL LALP Sbjct: 308 GWVAAVSAFVLFLGVHAMESYVLTPLIQRQALDIPPATLFAFQILLGIVFGVWGLTLALP 367 Query: 336 LMAIAKVMIDHFKTEEPARAA 356 LMAIAKVMID+FK++ A Sbjct: 368 LMAIAKVMIDYFKSDRRTEDA 388 >ref|NP_771599.1| hypothetical protein blr4959 [Bradyrhizobium japonicum USDA 110] dbj|BAC50224.1| blr4959 [Bradyrhizobium japonicum USDA 110] Length = 388 Score = 486 bits (1250), Expect = e-135, Method: Compositional matrix adjust. Identities = 254/372 (68%), Positives = 296/372 (79%), Gaps = 24/372 (6%) Query: 1 VTDSADHRLQARNDLAWAIAVGGIGVVLFAALLTFAWHFAX------------------- 41 VT S D R + R+DLAWAI+VGGI VVL ALL F W+FA Sbjct: 12 VTISRDERPRTRSDLAWAISVGGISVVLVTALLAFTWYFAATLLLIFTGMLLGVGLNALT 71 Query: 42 --LGRLTKLPHALRLAIVCLAMAGLLSGIVFLGGTTIAQQATVLSNTIKSQLGSVKDFLE 99 LGR LPH +RLAIVC+A+A +L+G+ +LGG TIA+QA++LS TI+SQ+ +VK FL+ Sbjct: 72 NALGRRVHLPHTMRLAIVCIALALMLAGVAYLGGATIAEQASLLSKTIRSQITNVKSFLD 131 Query: 100 QHGVDTSYLDFTNAAGEAKGEGTAVTTTTTPPSSQSHGIPGAGALASSGGAIISQTLKVL 159 HG+DTS+ DF NAA A T +T TP ++ +PGAGALASSGGAI+SQT K+L Sbjct: 132 THGIDTSFFDFGNAAPAAS---TDAGSTPTPNTAPRGNLPGAGALASSGGAIVSQTFKLL 188 Query: 160 LGTVSVVGNFFIVLFLGLAFAAQPSIYRAGLLFIAPAKYRAQATIIVDRIGETLERWLIA 219 LGT+S VGN FIVLFLGLAFAAQPS+Y GLLF+ PA++R +AT+IVDRI ETLERWLIA Sbjct: 189 LGTISAVGNIFIVLFLGLAFAAQPSVYHDGLLFLVPARHRTRATLIVDRISETLERWLIA 248 Query: 220 QIITMTAVFLVTWIGLAIIGIPSSFILGIQAGLLAFIPTVGAILGGLIVVLASLATGWIA 279 QII M AV +VTWIGLAIIGIP SFILGIQAGLLAFIPTVGAI+ G++VVLASLA+GWI Sbjct: 249 QIIVMLAVGVVTWIGLAIIGIPGSFILGIQAGLLAFIPTVGAIIAGVVVVLASLASGWIP 308 Query: 280 ALSAFILFLGVHALESYVLTPIIQRQALDIPPATLFAFQILLGVVFGIWGLALALPLMAI 339 ALSA ILFLGVHA+ESYVLTP++QRQALDIPPATLFAFQILLGVVFGIWGLALALPL+AI Sbjct: 309 ALSALILFLGVHAMESYVLTPLLQRQALDIPPATLFAFQILLGVVFGIWGLALALPLVAI 368 Query: 340 AKVMIDHFKTEE 351 AKVMIDHFKT E Sbjct: 369 AKVMIDHFKTYE 380 >ref|YP_577487.1| hypothetical protein Nham_2235 [Nitrobacter hamburgensis X14] gb|ABE63027.1| protein of unknown function UPF0118 [Nitrobacter hamburgensis X14] Length = 395 Score = 475 bits (1222), Expect = e-132, Method: Compositional matrix adjust. Identities = 259/390 (66%), Positives = 301/390 (77%), Gaps = 35/390 (8%) Query: 1 VTDSADHRLQARNDLAWAIAVGGIGVVLFAALLTFAWHFAX------------------- 41 +TD + Q R DLAWAIA GGIG+VLFAALL FAW FA Sbjct: 1 MTDFTAGKGQTRTDLAWAIATGGIGIVLFAALLVFAWEFAATLFLIFAGVLLGVALNAIT 60 Query: 42 --LGRLTKLPHALRLAIVCLAMAGLLSGIVFLGGTTIAQQATVLSNTIKSQLGSVKDFLE 99 LGR+ +LPH LRL IVCLA+A LSG+V LGGTTIA Q TVLSNT+KSQL ++K FLE Sbjct: 61 NLLGRVVRLPHGLRLTIVCLALAAALSGVVVLGGTTIADQTTVLSNTLKSQLVNLKAFLE 120 Query: 100 QHGVDTSYLDFTN---------AAGEAKGEGTAVTT-----TTTPPSSQSHGIPGAGALA 145 ++GVDTSY + TN A+G A+ G A + TP ++ H +P AGALA Sbjct: 121 KNGVDTSYFNLTNLNASSETSKASGTARASGPARASGAAKAEETPSTNVQHNLPSAGALA 180 Query: 146 SSGGAIISQTLKVLLGTVSVVGNFFIVLFLGLAFAAQPSIYRAGLLFIAPAKYRAQATII 205 SSG AI+SQTLK++LGTVS VGNFFIVLFLGL FAAQP++YR GLL +APAK+RA ATI+ Sbjct: 181 SSGSAIVSQTLKLILGTVSAVGNFFIVLFLGLCFAAQPTLYRKGLLGMAPAKHRAAATIL 240 Query: 206 VDRIGETLERWLIAQIITMTAVFLVTWIGLAIIGIPSSFILGIQAGLLAFIPTVGAILGG 265 VDRIG+TLERWLIAQ++TM AVFLVTWIGL IIGI SSFILGIQAGLLAFIPT+GA+LGG Sbjct: 241 VDRIGDTLERWLIAQMVTMAAVFLVTWIGLEIIGIQSSFILGIQAGLLAFIPTIGALLGG 300 Query: 266 LIVVLASLATGWIAALSAFILFLGVHALESYVLTPIIQRQALDIPPATLFAFQILLGVVF 325 LIVVLASLA+GW+A SAF+LFLGVHALESY+LTPIIQRQALDIPPATLFAFQILLGVVF Sbjct: 301 LIVVLASLASGWVAGASAFVLFLGVHALESYILTPIIQRQALDIPPATLFAFQILLGVVF 360 Query: 326 GIWGLALALPLMAIAKVMIDHFKTEEPARA 355 G+WGLALALPL+AI KV ID+ + + R+ Sbjct: 361 GVWGLALALPLLAIGKVAIDYLREDGEQRS 390 >ref|ZP_08630112.1| protein of unknown function UPF0118 [Bradyrhizobiaceae bacterium SG-6C] gb|EGP07206.1| protein of unknown function UPF0118 [Bradyrhizobiaceae bacterium SG-6C] Length = 383 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 247/362 (68%), Positives = 291/362 (80%), Gaps = 23/362 (6%) Query: 6 DHRLQARNDLAWAIAVGGIGVVLFAALLTFAWHFAX--------------LGRLTKL--- 48 + R+Q R+DLAW+IAVGGIG++ FAA L FAW++A L +T L Sbjct: 6 ETRVQTRSDLAWSIAVGGIGIIAFAAFLLFAWYYAATLFLVFAGILLGVALTAMTNLLKK 65 Query: 49 ----PHALRLAIVCLAMAGLLSGIVFLGGTTIAQQATVLSNTIKSQLGSVKDFLEQHGVD 104 PHALRLA+VC+ +AG+LSG+VFLGG TIA+QA VLSNT+KSQL +VK FLEQHGVD Sbjct: 66 VMGGPHALRLALVCVVLAGMLSGVVFLGGATIARQAAVLSNTLKSQLVTVKTFLEQHGVD 125 Query: 105 TSYLDFTNAAGEAKGEGTAVTTTTTPPSSQSHGIPGAGALASSGGAIISQTLKVLLGTVS 164 TSYL+ A A T T PP++ +P AGALAS GGAI+SQTLK+LLGTVS Sbjct: 126 TSYLEL--GAVTATPASATDTPTAAPPAALPKNLPSAGALASGGGAIVSQTLKLLLGTVS 183 Query: 165 VVGNFFIVLFLGLAFAAQPSIYRAGLLFIAPAKYRAQATIIVDRIGETLERWLIAQIITM 224 VGNFFIVLFLGL+FAAQP +YR GLL ++P K+R T++VDRI +TLERWLIAQ+ITM Sbjct: 184 AVGNFFIVLFLGLSFAAQPGVYRKGLLALSPKKHRHSVTVVVDRISDTLERWLIAQMITM 243 Query: 225 TAVFLVTWIGLAIIGIPSSFILGIQAGLLAFIPTVGAILGGLIVVLASLATGWIAALSAF 284 AVF+VTWIGL+IIGI SSFILGIQAGLLAFIPTVGA++GGLI+VLASLA+GW+AA SAF Sbjct: 244 AAVFMVTWIGLSIIGIDSSFILGIQAGLLAFIPTVGALVGGLIIVLASLASGWVAAFSAF 303 Query: 285 ILFLGVHALESYVLTPIIQRQALDIPPATLFAFQILLGVVFGIWGLALALPLMAIAKVMI 344 +LFLGVHALESY+LTPIIQRQALDIPPATLFAFQILLGVVFG+WGLALALPLMAI KV+I Sbjct: 304 LLFLGVHALESYILTPIIQRQALDIPPATLFAFQILLGVVFGLWGLALALPLMAIVKVII 363 Query: 345 DH 346 + Sbjct: 364 TY 365