BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0014.0003.p         (102 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001242127.1| coenzyme PQQ synthesis protein D [Bradyrhizo...   173   7e-42
ref|YP_001207679.1| coenzyme PQQ synthesis protein D [Bradyrhizo...   172   2e-41
ref|YP_569168.1| coenzyme PQQ synthesis D [Rhodopseudomonas palu...   171   3e-41
ref|NP_773378.1| pyrroloquinoline quinone synthesis protein D [B...   167   6e-40
ref|YP_779780.1| coenzyme PQQ synthesis D [Rhodopseudomonas palu...   166   1e-39

>ref|YP_001242127.1| coenzyme PQQ synthesis protein D [Bradyrhizobium sp. BTAi1]
 gb|ABQ38221.1| Coenzyme PQQ synthesis protein D [Bradyrhizobium sp. BTAi1]
          Length = 102

 Score =  173 bits (439), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 83/102 (81%), Positives = 94/102 (92%)

Query: 1   MASRNISVSETSRPKLPRHTKLKFDETRQVWVILAPERVLAPDDIAVEVLQLCDGVRSVA 60
           MA R+I V+ETSR  LPRHTKLKFDETRQVWVILAPERVLAPD+IAVEVL+LCDGVRSVA
Sbjct: 1   MAPRHIQVAETSRVVLPRHTKLKFDETRQVWVILAPERVLAPDEIAVEVLKLCDGVRSVA 60

Query: 61  AMVDQLAEKYAAPREAIATDVIAMLQDLADKGFLTEARESTA 102
            ++D+LA KYAAPR+ IATDV+AMLQDLADKGFLTE RE+T+
Sbjct: 61  GIIDELATKYAAPRDVIATDVVAMLQDLADKGFLTEVRETTS 102


>ref|YP_001207679.1| coenzyme PQQ synthesis protein D [Bradyrhizobium sp. ORS 278]
 emb|CAL79462.1| Coenzyme PQQ synthesis protein D (Pyrroloquinoline quinone
           biosynthesis protein D)(PqqD) [Bradyrhizobium sp. ORS
           278]
          Length = 102

 Score =  172 bits (436), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 82/102 (80%), Positives = 93/102 (91%)

Query: 1   MASRNISVSETSRPKLPRHTKLKFDETRQVWVILAPERVLAPDDIAVEVLQLCDGVRSVA 60
           MA R+I V+ETSR  LPRHTKLK+DETRQVWVILAPERVLAPD+IAVEVLQLCDG RSVA
Sbjct: 1   MAPRHIQVTETSRVVLPRHTKLKYDETRQVWVILAPERVLAPDEIAVEVLQLCDGARSVA 60

Query: 61  AMVDQLAEKYAAPREAIATDVIAMLQDLADKGFLTEARESTA 102
            ++D+LA KYAAPR+ IATDV+AMLQDLADKGFLTE RE+T+
Sbjct: 61  GIIDELAAKYAAPRDVIATDVVAMLQDLADKGFLTEVRETTS 102


>ref|YP_569168.1| coenzyme PQQ synthesis D [Rhodopseudomonas palustris BisB5]
 sp|Q139H2.1|PQQD_RHOPS RecName: Full=Coenzyme PQQ synthesis protein D; AltName:
           Full=Pyrroloquinoline quinone biosynthesis protein D
 gb|ABE39267.1| coenzyme PQQ synthesis D [Rhodopseudomonas palustris BisB5]
          Length = 102

 Score =  171 bits (433), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 82/100 (82%), Positives = 89/100 (89%)

Query: 1   MASRNISVSETSRPKLPRHTKLKFDETRQVWVILAPERVLAPDDIAVEVLQLCDGVRSVA 60
           MASRNI+VSE SRP LPRH KL+FDETRQ WVILAPERVLAPDDIAVE+LQLCDG RSV+
Sbjct: 1   MASRNITVSEASRPALPRHAKLRFDETRQRWVILAPERVLAPDDIAVEILQLCDGARSVS 60

Query: 61  AMVDQLAEKYAAPREAIATDVIAMLQDLADKGFLTEARES 100
           A++DQLA KY A R  I TDV+AMLQDLADKGFLTEARES
Sbjct: 61  AIIDQLATKYTADRAEIGTDVVAMLQDLADKGFLTEARES 100


>ref|NP_773378.1| pyrroloquinoline quinone synthesis protein D [Bradyrhizobium
           japonicum USDA 110]
 sp|Q89FG2.1|PQQD_BRAJA RecName: Full=Coenzyme PQQ synthesis protein D; AltName:
           Full=Pyrroloquinoline quinone biosynthesis protein D
 dbj|BAC52003.1| pqqD [Bradyrhizobium japonicum USDA 110]
          Length = 103

 Score =  167 bits (422), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 82/99 (82%), Positives = 89/99 (89%)

Query: 4   RNISVSETSRPKLPRHTKLKFDETRQVWVILAPERVLAPDDIAVEVLQLCDGVRSVAAMV 63
           R+ISVSE SRP LPRH KLK+DETR+VWVILAPERVLAPD+IAVEVLQLC+G RSV  + 
Sbjct: 5   RHISVSEASRPVLPRHAKLKYDETREVWVILAPERVLAPDEIAVEVLQLCNGERSVGDVS 64

Query: 64  DQLAEKYAAPREAIATDVIAMLQDLADKGFLTEARESTA 102
           DQLA KYAAPREAI TDVIAMLQDLADKGFLTEARE T+
Sbjct: 65  DQLAAKYAAPREAILTDVIAMLQDLADKGFLTEAREKTS 103


>ref|YP_779780.1| coenzyme PQQ synthesis D [Rhodopseudomonas palustris BisA53]
 gb|ABJ04800.1| coenzyme PQQ synthesis D [Rhodopseudomonas palustris BisA53]
          Length = 109

 Score =  166 bits (420), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 81/99 (81%), Positives = 85/99 (85%)

Query: 4   RNISVSETSRPKLPRHTKLKFDETRQVWVILAPERVLAPDDIAVEVLQLCDGVRSVAAMV 63
           RNISVSE SRP LPRH KLKFD TRQ WVILAPERVLAPDDIAVE+LQLCDG R VA+M+
Sbjct: 6   RNISVSEASRPLLPRHAKLKFDATRQRWVILAPERVLAPDDIAVEILQLCDGARDVASMI 65

Query: 64  DQLAEKYAAPREAIATDVIAMLQDLADKGFLTEARESTA 102
           DQLA+KYAA R  I  DVIAMLQDLADKGFLTEARE  A
Sbjct: 66  DQLAQKYAADRAVIGVDVIAMLQDLADKGFLTEAREPMA 104