BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0014.0002.p (410 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773379.1| pyrroloquinoline quinone biosynthesis protein P... 706 0.0 ref|YP_001242128.1| pyrroloquinoline quinone biosynthesis protei... 697 0.0 sp|Q89FG1.2|PQQE_BRAJA RecName: Full=Coenzyme PQQ synthesis prot... 696 0.0 ref|YP_001207680.1| pyrroloquinoline quinone biosynthesis protei... 692 0.0 ref|ZP_08629422.1| coenzyme PQQ synthesis protein E [Bradyrhizob... 684 0.0 >ref|NP_773379.1| pyrroloquinoline quinone biosynthesis protein PqqE [Bradyrhizobium japonicum USDA 110] dbj|BAC52004.1| pqqE [Bradyrhizobium japonicum USDA 110] Length = 399 Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/403 (83%), Positives = 366/403 (90%), Gaps = 4/403 (0%) Query: 1 MSDTLADNKTTTAGPTDGLAVLEQTRSAAETYGIPLAVLLEITHRCPLQCPYCSNPVELD 60 MSD L + K +D LAVLE+ RS AET+GIPLAVLLEITHRCPLQCPYCSNPVELD Sbjct: 1 MSDVLGNPKIPPE-TSDSLAVLEKQRSTAETFGIPLAVLLEITHRCPLQCPYCSNPVELD 59 Query: 61 RGSTELTTEEWKKVLSELAELGVLQVHFSGGEPTARKDIVELVQRASDVGLYSNLITSAV 120 R ELTT+EWKKVLSELAE+GVLQVHFSGGEPTARKD+VELV+ ASDVGLY+NLITSAV Sbjct: 60 RSGKELTTDEWKKVLSELAEIGVLQVHFSGGEPTARKDLVELVKHASDVGLYTNLITSAV 119 Query: 121 LLTKDKLSALADAGLSHVQISFQGNEPVVADRVAGLKDAHRKKLEVAKWTRELDMPLTVN 180 LLT+++LS LADAGL HVQISFQG E +ADRVAG ++AHRKKLEVAKWTRELD+PLTVN Sbjct: 120 LLTRERLSELADAGLCHVQISFQGVEEGLADRVAGYRNAHRKKLEVAKWTRELDLPLTVN 179 Query: 181 AVMHRQNLHQLPDIIQMAVDLDADRLEVANVQYYGWALKNRAALMPTIEQIEETSRIVEE 240 AVMHRQNLHQLPDIIQM++DLDADRLEVANVQYYGWALKNRAALMPT+ Q++E +R+VEE Sbjct: 180 AVMHRQNLHQLPDIIQMSIDLDADRLEVANVQYYGWALKNRAALMPTVAQLDECTRLVEE 239 Query: 241 AQVRLKGTLAIDYVVPDYYALRPKKCMGGWGRQFFNISPAGKVLPCHAAESITGLEFESV 300 A+ RLKG L+IDYVVPDYYALRPKKCMGGWGRQFFNISPAGKVLPCHAAESITGL+FESV Sbjct: 240 ARERLKGRLSIDYVVPDYYALRPKKCMGGWGRQFFNISPAGKVLPCHAAESITGLDFESV 299 Query: 301 RSNHSIAWIWQNSEAFNRYRGTGWMPEPCKSCEFREIDYGGCRCQAFALTGDAGNTDPAC 360 RSNHSIAWIWQNSEAFNRYRGTGWM EPCKSCEFREID+GGCRCQAFALTGDA NTDPAC Sbjct: 300 RSNHSIAWIWQNSEAFNRYRGTGWMKEPCKSCEFREIDFGGCRCQAFALTGDAANTDPAC 359 Query: 361 ALSPRHEEIFKQAERESAGTQNRFLYRNFAGGTLETDEPRNES 403 ALSP HE IFKQAERE+ G NRFLYRNFAGGTL EP N++ Sbjct: 360 ALSPLHETIFKQAEREAEGETNRFLYRNFAGGTL---EPENDA 399 >ref|YP_001242128.1| pyrroloquinoline quinone biosynthesis protein PqqE [Bradyrhizobium sp. BTAi1] gb|ABQ38222.1| pyrroloquinoline quinone biosynthesis protein E [Bradyrhizobium sp. BTAi1] Length = 398 Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/379 (86%), Positives = 350/379 (92%) Query: 17 DGLAVLEQTRSAAETYGIPLAVLLEITHRCPLQCPYCSNPVELDRGSTELTTEEWKKVLS 76 DGLAVLE+ S AETYGIPLAVLLE+THRCPLQCPYCSNP+ELDR ELTT EWKKVLS Sbjct: 15 DGLAVLERRGSVAETYGIPLAVLLELTHRCPLQCPYCSNPLELDRAGQELTTAEWKKVLS 74 Query: 77 ELAELGVLQVHFSGGEPTARKDIVELVQRASDVGLYSNLITSAVLLTKDKLSALADAGLS 136 ELAE+GVLQVHFSGGEPTARKDIVELVQ A+DVGLY+NLITSAVLLT+++L LADAGL Sbjct: 75 ELAEIGVLQVHFSGGEPTARKDIVELVQHANDVGLYTNLITSAVLLTRERLKELADAGLC 134 Query: 137 HVQISFQGNEPVVADRVAGLKDAHRKKLEVAKWTRELDMPLTVNAVMHRQNLHQLPDIIQ 196 HVQISFQGNEPVVADRV G K H KKLEVAKWTRELD+PLTVNAVMHRQNLHQLPDIIQ Sbjct: 135 HVQISFQGNEPVVADRVGGYKGGHAKKLEVAKWTRELDLPLTVNAVMHRQNLHQLPDIIQ 194 Query: 197 MAVDLDADRLEVANVQYYGWALKNRAALMPTIEQIEETSRIVEEAQVRLKGTLAIDYVVP 256 MAVDLDADRLEVANVQYYGWALKNRA+LMPT EQ+EET R+VEEA+ RLKGTL IDYVVP Sbjct: 195 MAVDLDADRLEVANVQYYGWALKNRASLMPTYEQLEETDRLVEEARERLKGTLTIDYVVP 254 Query: 257 DYYALRPKKCMGGWGRQFFNISPAGKVLPCHAAESITGLEFESVRSNHSIAWIWQNSEAF 316 DYYALRPKKCMGGWGRQFFNISP+GKVLPCHAAESITGL+F SVRSN+SIAWIWQNSEAF Sbjct: 255 DYYALRPKKCMGGWGRQFFNISPSGKVLPCHAAESITGLDFMSVRSNNSIAWIWQNSEAF 314 Query: 317 NRYRGTGWMPEPCKSCEFREIDYGGCRCQAFALTGDAGNTDPACALSPRHEEIFKQAERE 376 NRYRGTGWM EPCKSCEFREID+GGCRCQAFALTGDA NTDPAC LSP HE IFKQAER+ Sbjct: 315 NRYRGTGWMKEPCKSCEFREIDFGGCRCQAFALTGDAANTDPACTLSPLHESIFKQAERD 374 Query: 377 SAGTQNRFLYRNFAGGTLE 395 +A Q+RFLYRNFAGGT E Sbjct: 375 AASGQDRFLYRNFAGGTPE 393 >sp|Q89FG1.2|PQQE_BRAJA RecName: Full=Coenzyme PQQ synthesis protein E; AltName: Full=Pyrroloquinoline quinone biosynthesis protein E Length = 380 Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/383 (85%), Positives = 356/383 (92%), Gaps = 3/383 (0%) Query: 21 VLEQTRSAAETYGIPLAVLLEITHRCPLQCPYCSNPVELDRGSTELTTEEWKKVLSELAE 80 +LE+ RS AET+GIPLAVLLEITHRCPLQCPYCSNPVELDR ELTT+EWKKVLSELAE Sbjct: 1 MLEKQRSTAETFGIPLAVLLEITHRCPLQCPYCSNPVELDRSGKELTTDEWKKVLSELAE 60 Query: 81 LGVLQVHFSGGEPTARKDIVELVQRASDVGLYSNLITSAVLLTKDKLSALADAGLSHVQI 140 +GVLQVHFSGGEPTARKD+VELV+ ASDVGLY+NLITSAVLLT+++LS LADAGL HVQI Sbjct: 61 IGVLQVHFSGGEPTARKDLVELVKHASDVGLYTNLITSAVLLTRERLSELADAGLCHVQI 120 Query: 141 SFQGNEPVVADRVAGLKDAHRKKLEVAKWTRELDMPLTVNAVMHRQNLHQLPDIIQMAVD 200 SFQG E +ADRVAG ++AHRKKLEVAKWTRELD+PLTVNAVMHRQNLHQLPDIIQM++D Sbjct: 121 SFQGVEEGLADRVAGYRNAHRKKLEVAKWTRELDLPLTVNAVMHRQNLHQLPDIIQMSID 180 Query: 201 LDADRLEVANVQYYGWALKNRAALMPTIEQIEETSRIVEEAQVRLKGTLAIDYVVPDYYA 260 LDADRLEVANVQYYGWALKNRAALMPT+ Q++E +R+VEEA+ RLKG L+IDYVVPDYYA Sbjct: 181 LDADRLEVANVQYYGWALKNRAALMPTVAQLDECTRLVEEARERLKGRLSIDYVVPDYYA 240 Query: 261 LRPKKCMGGWGRQFFNISPAGKVLPCHAAESITGLEFESVRSNHSIAWIWQNSEAFNRYR 320 LRPKKCMGGWGRQFFNISPAGKVLPCHAAESITGL+FESVRSNHSIAWIWQNSEAFNRYR Sbjct: 241 LRPKKCMGGWGRQFFNISPAGKVLPCHAAESITGLDFESVRSNHSIAWIWQNSEAFNRYR 300 Query: 321 GTGWMPEPCKSCEFREIDYGGCRCQAFALTGDAGNTDPACALSPRHEEIFKQAERESAGT 380 GTGWM EPCKSCEFREID+GGCRCQAFALTGDA NTDPACALSP HE IFKQAERE+ G Sbjct: 301 GTGWMKEPCKSCEFREIDFGGCRCQAFALTGDAANTDPACALSPLHETIFKQAEREAEGE 360 Query: 381 QNRFLYRNFAGGTLETDEPRNES 403 NRFLYRNFAGGTL EP N++ Sbjct: 361 TNRFLYRNFAGGTL---EPENDA 380 >ref|YP_001207680.1| pyrroloquinoline quinone biosynthesis protein PqqE [Bradyrhizobium sp. ORS 278] emb|CAL79463.1| pyrroloquinoline quinone biosynthesis protein E (Coenzyme PQQ synthesis protein E) [Bradyrhizobium sp. ORS 278] Length = 397 Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/391 (83%), Positives = 353/391 (90%) Query: 8 NKTTTAGPTDGLAVLEQTRSAAETYGIPLAVLLEITHRCPLQCPYCSNPVELDRGSTELT 67 + T DGLAVLE+ S AET+GIPLAVLLE+THRCPLQCPYCSNP+ELDR ELT Sbjct: 6 DTTAQIDSNDGLAVLERRGSVAETFGIPLAVLLELTHRCPLQCPYCSNPLELDRAGQELT 65 Query: 68 TEEWKKVLSELAELGVLQVHFSGGEPTARKDIVELVQRASDVGLYSNLITSAVLLTKDKL 127 T EWKKVLSELAE+GVLQVHFSGGEPTARKDIVELV A+DVGLY+NLITSAVLLT+++L Sbjct: 66 TAEWKKVLSELAEIGVLQVHFSGGEPTARKDIVELVAHANDVGLYTNLITSAVLLTRERL 125 Query: 128 SALADAGLSHVQISFQGNEPVVADRVAGLKDAHRKKLEVAKWTRELDMPLTVNAVMHRQN 187 LADAGL HVQISFQGNEPVVADRV G K H KKLEVAKWTRELD+PLTVNAVMHRQN Sbjct: 126 KELADAGLCHVQISFQGNEPVVADRVGGYKGGHAKKLEVAKWTRELDLPLTVNAVMHRQN 185 Query: 188 LHQLPDIIQMAVDLDADRLEVANVQYYGWALKNRAALMPTIEQIEETSRIVEEAQVRLKG 247 LHQLPDIIQMAVDLDADRLEVANVQYYGWALKNRA+LMPT +Q+EET R+VEEA+ RL+G Sbjct: 186 LHQLPDIIQMAVDLDADRLEVANVQYYGWALKNRASLMPTYQQLEETDRLVEEARERLRG 245 Query: 248 TLAIDYVVPDYYALRPKKCMGGWGRQFFNISPAGKVLPCHAAESITGLEFESVRSNHSIA 307 TL IDYVVPDYYALRPKKCMGGWGRQFFNISP+GKVLPCHAAESITGL+F SVRSN+SIA Sbjct: 246 TLTIDYVVPDYYALRPKKCMGGWGRQFFNISPSGKVLPCHAAESITGLDFMSVRSNNSIA 305 Query: 308 WIWQNSEAFNRYRGTGWMPEPCKSCEFREIDYGGCRCQAFALTGDAGNTDPACALSPRHE 367 WIWQNSEAFNRYRGTGWM EPCKSCEFREID+GGCRCQAFALTGDA NTDPAC LSP HE Sbjct: 306 WIWQNSEAFNRYRGTGWMREPCKSCEFREIDFGGCRCQAFALTGDAANTDPACTLSPLHE 365 Query: 368 EIFKQAERESAGTQNRFLYRNFAGGTLETDE 398 IFKQAER++A Q+RFLYRNFAGGT E+ + Sbjct: 366 SIFKQAERDAASGQDRFLYRNFAGGTPESHD 396 >ref|ZP_08629422.1| coenzyme PQQ synthesis protein E [Bradyrhizobiaceae bacterium SG-6C] gb|EGP07915.1| coenzyme PQQ synthesis protein E [Bradyrhizobiaceae bacterium SG-6C] Length = 400 Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust. Identities = 319/397 (80%), Positives = 353/397 (88%), Gaps = 1/397 (0%) Query: 1 MSDTLADNKTTTAGPTDGLAVLEQTRSAAETYGIPLAVLLEITHRCPLQCPYCSNPVELD 60 M+ TL D P DGL VLE +S AET+GIPLAVL E+THRCPLQCPYCSNP+EL+ Sbjct: 1 MNPTLTDASPVHTDPADGLTVLEARKSQAETFGIPLAVLAELTHRCPLQCPYCSNPLELE 60 Query: 61 RGSTELTTEEWKKVLSELAELGVLQVHFSGGEPTARKDIVELVQRASDVGLYSNLITSAV 120 R EL+T+EWK+VLSELA++GVLQ+HFSGGEPTARKD+ ELV+ A+DVGLYSNLITSAV Sbjct: 61 RSGAELSTDEWKRVLSELAQMGVLQIHFSGGEPTARKDLAELVRHATDVGLYSNLITSAV 120 Query: 121 LLTKDKLSALADAGLSHVQISFQGNEPVVADRVAGLKDAHRKKLEVAKWTRELDMPLTVN 180 LLT+DKL+ALADAGL H+QISFQG+E VADRVAGLKDAH KK+E A W REL +PLTVN Sbjct: 121 LLTRDKLAALADAGLCHIQISFQGSEQGVADRVAGLKDAHAKKIEAAGWARELGLPLTVN 180 Query: 181 AVMHRQNLHQLPDIIQMAVDLDADRLEVANVQYYGWALKNRAALMPTIEQIEETSRIVEE 240 AVMHRQNL QL DIIQMAVDLDADRLEVANVQYYGWALKNRAALMPT+EQIEETSRIVEE Sbjct: 181 AVMHRQNLFQLSDIIQMAVDLDADRLEVANVQYYGWALKNRAALMPTLEQIEETSRIVEE 240 Query: 241 AQVRLKGTLAIDYVVPDYYALRPKKCMGGWGRQFFNISPAGKVLPCHAAESITGLEFESV 300 A+ RLKG LAIDYVVPDYYALRPKKCMGGWGRQFFNISP+GK+LPCHAAE+ITGL FESV Sbjct: 241 AETRLKGILAIDYVVPDYYALRPKKCMGGWGRQFFNISPSGKILPCHAAETITGLAFESV 300 Query: 301 RSNHSIAWIWQNSEAFNRYRGTGWMPEPCKSCEFREIDYGGCRCQAFALTGDAGNTDPAC 360 R +HSIAWIWQNSEAFNRYRGTGWMP+PC+SCE+RE+DYGGCRCQAFALTG+AGNTDPAC Sbjct: 301 R-DHSIAWIWQNSEAFNRYRGTGWMPQPCQSCEYREVDYGGCRCQAFALTGNAGNTDPAC 359 Query: 361 ALSPRHEEIFKQAERESAGTQNRFLYRNFAGGTLETD 397 ALSP HE IFK A E+AG RF+YRNFAGGT E D Sbjct: 360 ALSPMHEAIFKTAMSEAAGDTRRFIYRNFAGGTFEAD 396