BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0048.p (256 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002371783.1| short chain dehydrogenase [Cyanothece sp. PC... 253 2e-65 ref|YP_002420345.1| short-chain dehydrogenase/reductase SDR [Met... 246 2e-63 ref|YP_001638824.1| short-chain dehydrogenase/reductase SDR [Met... 245 4e-63 ref|YP_002962301.1| Short-chain dehydrogenase/reductase SDR [met... 245 4e-63 ref|YP_003067560.1| short-chain dehydrogenase/reductase SDR [Met... 242 4e-62 >ref|YP_002371783.1| short chain dehydrogenase [Cyanothece sp. PCC 8801] gb|ACK65627.1| short-chain dehydrogenase/reductase SDR [Cyanothece sp. PCC 8801] Length = 249 Score = 253 bits (646), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 140/252 (55%), Positives = 175/252 (69%), Gaps = 8/252 (3%) Query: 5 LDGKAALVTGGGSGIGRATAIAMAREGARVAVSDLSMDGIEETVALINAAGGQSIAIQGD 64 + K ALVTGG SGIGRATAIA A+EGA+V V+ EETV LI GG++ I D Sbjct: 4 FENKVALVTGGTSGIGRATAIAFAKEGAKVIVASRRHKEGEETVRLIKEIGGEAEFIATD 63 Query: 65 VTDEADVANMVARTVSAFGRIDCAFNNAGVAGRSVGPPGQRIHELTQASVAKMFSVNLMG 124 VT E V ++A+TV+ +GRIDCAFNNAGV +G P I E T + K+F+VN+ G Sbjct: 64 VTQEEAVKQLIAQTVAIYGRIDCAFNNAGVG---IGNP---IIEETAENYDKVFNVNVKG 117 Query: 125 VFLCLKYEIAQMLKQGGGGAIVNTASIAGLVGLATSGHYVATKHGVVGLTKSAAIEYAQD 184 VFLCLKYEIAQML+Q G G+IVN ASI GLVGL+ YVA+KH V+GLTK+AA+E A+ Sbjct: 118 VFLCLKYEIAQMLQQ-GQGSIVNCASILGLVGLSNVSLYVASKHAVLGLTKTAALEVAKS 176 Query: 185 GIRVNCVNPGYIKTPMTRETMD-ERYDEIIAKVPVRRLGVPEEIAEAVVWMCSDKASFMT 243 IRVN V PG IKT M + + E I K P+ R+G PEE+A AVV++CSDKASF+T Sbjct: 177 NIRVNSVAPGVIKTEMAEPFFEVPFFKEFIGKHPMGRVGTPEEVANAVVFLCSDKASFIT 236 Query: 244 GASHVVDGGYSA 255 G + +DGG+ A Sbjct: 237 GENIAIDGGFMA 248 >ref|YP_002420345.1| short-chain dehydrogenase/reductase SDR [Methylobacterium chloromethanicum CM4] gb|ACK82417.1| short-chain dehydrogenase/reductase SDR [Methylobacterium chloromethanicum CM4] Length = 248 Score = 246 bits (628), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 131/252 (51%), Positives = 171/252 (67%), Gaps = 6/252 (2%) Query: 3 GILDGKAALVTGGGSGIGRATAIAMAREGARVAVSDLSMDGIEETVALINAAGGQSIAIQ 62 G +GK A +TG SGIGRA AIA A+EGA+VA++D + +G+E A I GG+ IAI+ Sbjct: 2 GRFNGKVAFITGAASGIGRAAAIAFAKEGAQVAITDRTEEGLERLRAEIEGNGGEVIAIR 61 Query: 63 GDVTDEADVANMVARTVSAFGRIDCAFNNAGVAGRSVGPPGQRIHELTQASVAKMFSVNL 122 DV+ DV VARTV FGR+DCAFNNAGV ++ +HE+ ++ +NL Sbjct: 62 CDVSLPEDVEAAVARTVERFGRLDCAFNNAGVENKAA-----PVHEIALDEWDRILDINL 116 Query: 123 MGVFLCLKYEIAQMLKQGGGGAIVNTASIAGLVGLATSGHYVATKHGVVGLTKSAAIEYA 182 G F+C+K+EIAQML+QGGG +VNT+S AG+ G+A Y A+KH ++GLTKSAA++YA Sbjct: 117 RGTFVCMKHEIAQMLRQGGG-VVVNTSSGAGIRGVAGGASYAASKHALIGLTKSAALDYA 175 Query: 183 QDGIRVNCVNPGYIKTPMTRETMDERYDEIIAKVPVRRLGVPEEIAEAVVWMCSDKASFM 242 + IRVN V PG I+TPM + I PV RLG PEEIAEAV+WMCSD +F+ Sbjct: 176 KANIRVNAVLPGNIETPMMERFTGGDIQKAIDLEPVGRLGKPEEIAEAVLWMCSDLGAFV 235 Query: 243 TGASHVVDGGYS 254 TGAS VDGG+S Sbjct: 236 TGASISVDGGWS 247 >ref|YP_001638824.1| short-chain dehydrogenase/reductase SDR [Methylobacterium extorquens PA1] gb|ABY29753.1| short-chain dehydrogenase/reductase SDR [Methylobacterium extorquens PA1] Length = 282 Score = 245 bits (626), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 132/252 (52%), Positives = 170/252 (67%), Gaps = 6/252 (2%) Query: 3 GILDGKAALVTGGGSGIGRATAIAMAREGARVAVSDLSMDGIEETVALINAAGGQSIAIQ 62 G +GK A +TG SGIGRA AIA AREGA+VA++D + + +E A I GG IAI+ Sbjct: 36 GRFNGKVAFITGAASGIGRAAAIAFAREGAQVAITDRTEEALERLRAEIEGNGGAVIAIR 95 Query: 63 GDVTDEADVANMVARTVSAFGRIDCAFNNAGVAGRSVGPPGQRIHELTQASVAKMFSVNL 122 DV+ DVA VARTV FGR+DCAFNNAGV ++ +HE+ ++ +NL Sbjct: 96 CDVSLPEDVAAAVARTVERFGRLDCAFNNAGVENKAAP-----VHEIALDEWDRILDINL 150 Query: 123 MGVFLCLKYEIAQMLKQGGGGAIVNTASIAGLVGLATSGHYVATKHGVVGLTKSAAIEYA 182 G F+C+K+EIAQML+QGGG +VNT+S AG+ G+A Y A+KH ++GLTKSAA++YA Sbjct: 151 RGTFVCMKHEIAQMLRQGGG-VVVNTSSGAGIRGVAGGASYAASKHALIGLTKSAALDYA 209 Query: 183 QDGIRVNCVNPGYIKTPMTRETMDERYDEIIAKVPVRRLGVPEEIAEAVVWMCSDKASFM 242 + IRVN V PG I+TPM + I PV RLG PEEIAEAV+WMCSD +F+ Sbjct: 210 KANIRVNAVLPGNIETPMMERFTGGDIQKAIDLEPVGRLGKPEEIAEAVLWMCSDLGAFV 269 Query: 243 TGASHVVDGGYS 254 TGAS VDGG+S Sbjct: 270 TGASISVDGGWS 281 >ref|YP_002962301.1| Short-chain dehydrogenase/reductase SDR [methylobacterium extorquens AM1] gb|ACS39024.1| Short-chain dehydrogenase/reductase SDR [Methylobacterium extorquens AM1] Length = 248 Score = 245 bits (626), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 132/252 (52%), Positives = 171/252 (67%), Gaps = 6/252 (2%) Query: 3 GILDGKAALVTGGGSGIGRATAIAMAREGARVAVSDLSMDGIEETVALINAAGGQSIAIQ 62 G +GK A +TG SGIGRA AIA AREGA+VA++D + + +E A I GG+ IAI+ Sbjct: 2 GRFNGKVAFITGAASGIGRAAAIAFAREGAQVAITDRTEEALERLRAEIEGNGGEVIAIR 61 Query: 63 GDVTDEADVANMVARTVSAFGRIDCAFNNAGVAGRSVGPPGQRIHELTQASVAKMFSVNL 122 DV+ DV VARTV FGR+DCAFNNAGV ++ P +HE+ ++ +NL Sbjct: 62 CDVSLPEDVEAAVARTVERFGRLDCAFNNAGVENKAA--P---VHEIVLDEWDRILDINL 116 Query: 123 MGVFLCLKYEIAQMLKQGGGGAIVNTASIAGLVGLATSGHYVATKHGVVGLTKSAAIEYA 182 G F+C+K+EIAQML+QGGG +VNT+S AG+ G+A Y A+KH ++GLTKSAA++YA Sbjct: 117 RGTFVCMKHEIAQMLRQGGG-VVVNTSSGAGIRGVAGGASYAASKHALIGLTKSAALDYA 175 Query: 183 QDGIRVNCVNPGYIKTPMTRETMDERYDEIIAKVPVRRLGVPEEIAEAVVWMCSDKASFM 242 + IRVN V PG I+TPM + I PV RLG PEEIAEAV+WMCSD +F+ Sbjct: 176 KANIRVNAVLPGNIETPMMERFTGGDIQKAIDLEPVGRLGKPEEIAEAVLWMCSDLGAFV 235 Query: 243 TGASHVVDGGYS 254 TGAS VDGG+S Sbjct: 236 TGASISVDGGWS 247 >ref|YP_003067560.1| short-chain dehydrogenase/reductase SDR [Methylobacterium extorquens DM4] emb|CAX23590.1| Short-chain dehydrogenase/reductase SDR [Methylobacterium extorquens DM4] Length = 248 Score = 242 bits (617), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 129/252 (51%), Positives = 169/252 (67%), Gaps = 6/252 (2%) Query: 3 GILDGKAALVTGGGSGIGRATAIAMAREGARVAVSDLSMDGIEETVALINAAGGQSIAIQ 62 G +GK A +TG SGIGRA AIA A+EGA+VA++D + + +E A I GG+ IA + Sbjct: 2 GRFNGKVAFITGAASGIGRAAAIAFAKEGAQVAITDRTEEALERLRAEIEGNGGEVIATR 61 Query: 63 GDVTDEADVANMVARTVSAFGRIDCAFNNAGVAGRSVGPPGQRIHELTQASVAKMFSVNL 122 DV+ DV VARTV FGR+DCAFNNAGV ++ +HE+ ++ +NL Sbjct: 62 CDVSLPEDVEAAVARTVERFGRLDCAFNNAGVENKAA-----PVHEIALDEWDRILDINL 116 Query: 123 MGVFLCLKYEIAQMLKQGGGGAIVNTASIAGLVGLATSGHYVATKHGVVGLTKSAAIEYA 182 G F+C+K+EIAQML+QGGG +VNT+S AG+ G+A Y A+KH ++GLTKSAA++YA Sbjct: 117 RGAFVCMKHEIAQMLRQGGG-VVVNTSSGAGIRGVAGGASYAASKHALIGLTKSAALDYA 175 Query: 183 QDGIRVNCVNPGYIKTPMTRETMDERYDEIIAKVPVRRLGVPEEIAEAVVWMCSDKASFM 242 + IRVN V PG I+TPM + I PV RLG PEEIAEAV+WMCSD +F+ Sbjct: 176 KANIRVNAVLPGNIETPMMERFTGGDIQKAIDLEPVGRLGKPEEIAEAVLWMCSDLGAFV 235 Query: 243 TGASHVVDGGYS 254 TGAS VDGG+S Sbjct: 236 TGASISVDGGWS 247