BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0044.p (341 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_771015.1| hypothetical protein blr4375 [Bradyrhizobium ja... 400 e-109 ref|YP_531136.1| hypothetical protein RPC_1255 [Rhodopseudomonas... 361 8e-98 ref|YP_571668.1| ErfK/YbiS/YcfS/YnhG [Nitrobacter hamburgensis X... 342 4e-92 ref|YP_001208781.1| hypothetical protein BRADO6980 [Bradyrhizobi... 330 3e-88 ref|YP_001755603.1| ErfK/YbiS/YcfS/YnhG family protein [Methylob... 322 6e-86 >ref|NP_771015.1| hypothetical protein blr4375 [Bradyrhizobium japonicum USDA 110] dbj|BAC49640.1| blr4375 [Bradyrhizobium japonicum USDA 110] Length = 353 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 196/324 (60%), Positives = 240/324 (74%), Gaps = 3/324 (0%) Query: 10 FALVLLLVSAAPAVAAGLDAAAINDEAAPPARLPDRRQLSAFIARLEILLDRAHFSPGEI 69 F +VL+LV AA A + A+ + A P + + + RL++LLDRAHFSPGEI Sbjct: 30 FCIVLILVLAAAPAFAAEISPAVIESAEPSKKTLSNEKPTPAGVRLQVLLDRAHFSPGEI 89 Query: 70 DGKLGDNAQKALRAFAEASGVPFDKAVTAELWSSLTAASDGPAIVSYTIVDADVKGPFVK 129 DG+ G+NA+KALRA+AEA +P +A E+W +L A + P ++YTI + D GPF+ Sbjct: 90 DGRFGENAKKALRAYAEARQLPGSEAPMEEVWKALRA-DERPVTLTYTITERDAAGPFLN 148 Query: 130 RIPAKMESMKSLPALGYTSPREALAEKFHMSEALLQALNPGRKFNKAGETIAVANVVDAG 189 ++P+KME MK +P LG+TSPREALAEKFHMSE LL ALNPGR+F++AG+TI V + AG Sbjct: 149 KLPSKMEDMKDIPKLGFTSPREALAEKFHMSEQLLAALNPGRRFDRAGDTIVVVDTASAG 208 Query: 190 NATPIA--RVVVDKTRQTLSTFDAAGKLLGFYPATVGSADKPTPSGALKVTAINKNPTYR 247 P RV VDK RQT+ FD + L+GFYPATVGS DKP+PSG LKVT ++KNP YR Sbjct: 209 EGAPAKADRVEVDKVRQTVKLFDKSNALIGFYPATVGSEDKPSPSGTLKVTEVSKNPLYR 268 Query: 248 YNPKYAFKGVRSKTPFTIRPGPNNPVGVIWINLSGEGYGIHGTPDPGKISKAESHGCVRL 307 YNP Y FKGVRS+ PFTI+PGPNNPVG +WINLS EGYGIHGTP P KISKAESHGCVRL Sbjct: 269 YNPAYHFKGVRSRKPFTIKPGPNNPVGTVWINLSAEGYGIHGTPSPDKISKAESHGCVRL 328 Query: 308 TNWDVQRVAVGVAKGTPVAFVDSA 331 TNWD +RVA VAKGTPVAFV+ A Sbjct: 329 TNWDAERVAGSVAKGTPVAFVEGA 352 >ref|YP_531136.1| hypothetical protein RPC_1255 [Rhodopseudomonas palustris BisB18] gb|ABD86817.1| ErfK/YbiS/YcfS/YnhG [Rhodopseudomonas palustris BisB18] Length = 329 Score = 361 bits (927), Expect = 8e-98, Method: Compositional matrix adjust. Identities = 179/318 (56%), Positives = 228/318 (71%), Gaps = 1/318 (0%) Query: 12 LVLLLVSAAPAVAAGLDAAAINDEAAPPARLPDRRQLSAFIARLEILLDRAHFSPGEIDG 71 +V LL A PA AA L AIN A ++P +LS +L++LLDRAHFSPGEIDG Sbjct: 7 VVGLLCLAQPAYAAALQPDAIN-TAEFSGKIPTEDKLSPLAVKLQVLLDRAHFSPGEIDG 65 Query: 72 KLGDNAQKALRAFAEASGVPFDKAVTAELWSSLTAASDGPAIVSYTIVDADVKGPFVKRI 131 + G+N +KAL A+AEA+ +P KA+T E+W+ L A S P + YT+ D+KGPF+ ++ Sbjct: 66 RFGENVEKALAAYAEANALPPGKALTPEIWAKLKANSGDPVLAQYTLTAQDLKGPFLAKL 125 Query: 132 PAKMESMKSLPALGYTSPREALAEKFHMSEALLQALNPGRKFNKAGETIAVANVVDAGNA 191 PAKME MK+L L YT P+EAL+E+FH+S+ LL LNPG+KFN+AG+ I + ++ Sbjct: 126 PAKMEQMKTLKHLNYTGPKEALSERFHISQELLAELNPGQKFNRAGDAITIVSLPPEAMP 185 Query: 192 TPIARVVVDKTRQTLSTFDAAGKLLGFYPATVGSADKPTPSGALKVTAINKNPTYRYNPK 251 TP R+ VDK RQT+ F G LL FYPA+VGS +KPTPSGALKV ++ NP YRYNPK Sbjct: 186 TPATRLEVDKERQTVKAFAQDGSLLAFYPASVGSEEKPTPSGALKVDTVDANPNYRYNPK 245 Query: 252 YAFKGVRSKTPFTIRPGPNNPVGVIWINLSGEGYGIHGTPDPGKISKAESHGCVRLTNWD 311 Y F GV+SK PF I+PGPNNPVG +WI LS GYGIHGT DP ++SK++SHGCVRLTNWD Sbjct: 246 YKFSGVKSKKPFNIKPGPNNPVGAMWIGLSEPGYGIHGTADPSRVSKSDSHGCVRLTNWD 305 Query: 312 VQRVAVGVAKGTPVAFVD 329 V R++ V KG VAFVD Sbjct: 306 VLRLSRMVKKGVEVAFVD 323 >ref|YP_571668.1| ErfK/YbiS/YcfS/YnhG [Nitrobacter hamburgensis X14] gb|ABE64836.1| ErfK/YbiS/YcfS/YnhG [Nitrobacter hamburgensis X14] Length = 320 Score = 342 bits (878), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 164/290 (56%), Positives = 205/290 (70%), Gaps = 2/290 (0%) Query: 27 LDAAAINDEAAPPARLPDRRQLSAFIARLEILLDRAHFSPGEIDGKLGDNAQKALRAFAE 86 ++A AIN L + + A + RL++LLDRAHFSPGEIDG G+NA+KALRA+ E Sbjct: 1 MNAPAINSAEPSKTTLSNEKPTPAGV-RLQVLLDRAHFSPGEIDGVFGENAKKALRAYEE 59 Query: 87 ASGVPFDKAVTAELWSSLTAASDGPAIVSYTIVDADVKGPFVKRIPAKMESMKSLPALGY 146 A +P V+ E W L A D P I ++TI+D D+ GPF+ ++PAK+E MK +P L Y Sbjct: 60 AQQLPSSDNVSVEAWRKL-ATDDRPVIANHTIMDRDIAGPFLHKLPAKLEEMKGIPKLSY 118 Query: 147 TSPREALAEKFHMSEALLQALNPGRKFNKAGETIAVANVVDAGNATPIARVVVDKTRQTL 206 S RE LAEKFH+SE LL ALNPGR ++AG TI V + A+V VDK RQT+ Sbjct: 119 VSAREGLAEKFHVSEDLLVALNPGRHIDRAGVTIVVIDTGTGQIPKKAAKVEVDKKRQTV 178 Query: 207 STFDAAGKLLGFYPATVGSADKPTPSGALKVTAINKNPTYRYNPKYAFKGVRSKTPFTIR 266 FD + L+GFYPATVGS +KP+ SG LKVT + +NPTY YNP Y F GV S+ PFTI Sbjct: 179 KLFDKSNGLIGFYPATVGSEEKPSLSGTLKVTTVKRNPTYHYNPAYYFGGVHSRKPFTIA 238 Query: 267 PGPNNPVGVIWINLSGEGYGIHGTPDPGKISKAESHGCVRLTNWDVQRVA 316 PGPNNPVG +WI+LSGEGYG+HGT PGK+SK+ESHGC+RLTNWD +RVA Sbjct: 239 PGPNNPVGTVWISLSGEGYGVHGTSSPGKVSKSESHGCIRLTNWDAERVA 288 >ref|YP_001208781.1| hypothetical protein BRADO6980 [Bradyrhizobium sp. ORS 278] emb|CAL80566.1| conserved hypothetical protein; putative signal peptide; Putative peptidoglycan-binding domain-containing protein [Bradyrhizobium sp. ORS 278] Length = 324 Score = 330 bits (845), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 162/283 (57%), Positives = 196/283 (69%), Gaps = 3/283 (1%) Query: 41 RLPDRRQLSAFIARLEILLDRAHFSPGEIDGKLGDNAQKALRAFAEASGVPFDKAVTAEL 100 R P ++ R ++LLDRAH SPGEIDG GDNA+KAL AFA A G+ +T +L Sbjct: 36 RPPAEDKMDPVAIRAQVLLDRAHVSPGEIDGHFGDNARKALAAFASARGLDSGSKLTQQL 95 Query: 101 WSSLTAASDGPAIVSYTIVDADVKGPFVKRIPAKMESMKSLPALGYTSPREALAEKFHMS 160 W +L PAIV+Y I DVKGPF+K +P ME MK LP LGYTSPREALAEKFHMS Sbjct: 96 WDALRQ-DQAPAIVTYKITRDDVKGPFLKTLPRHMEDMKDLPRLGYTSPREALAEKFHMS 154 Query: 161 EALLQALNPGRKFNKAGETIAVANVVDAGNATP-IARVVVDKTRQTLSTFDAAGKLLGFY 219 E+LL ALNP KF++AGE IAVANV+ P I R+ +DK +++ FD G + Sbjct: 155 ESLLAALNPKSKFDRAGEEIAVANVMKPNETVPEITRLDIDKQAESVQAFDKDGNRVAML 214 Query: 220 PATVGSADKPTPSGALKVTAINKNPTYRYNPKYAFKGVRSKTPFTIRPGPNNPVGVIWIN 279 PATVGS DKPTP G+ KV +I+ NP YRYNP Y FKGV+++ PF I+PGPNNPVG WI Sbjct: 215 PATVGSDDKPTPVGSFKVDSIDANPNYRYNPDYKFKGVKARKPFDIKPGPNNPVGSYWIG 274 Query: 280 LS-GEGYGIHGTPDPGKISKAESHGCVRLTNWDVQRVAVGVAK 321 LS G GYGIHGT +P K+ K ESHGCVRLTNWDV + ++K Sbjct: 275 LSIGNGYGIHGTAEPAKVGKTESHGCVRLTNWDVTFLGQHLSK 317 >ref|YP_001755603.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium radiotolerans JCM 2831] gb|ACB24920.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium radiotolerans JCM 2831] Length = 370 Score = 322 bits (825), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 151/289 (52%), Positives = 198/289 (68%), Gaps = 10/289 (3%) Query: 51 FIARLEILLDRAHFSPGEIDGKLGDNAQKALRAFAEASGVPFDKAVTAELWSSLTAASDG 110 I + ++LLDRAHF PG IDG+ GDN + AL AFA A G+P + +T E+W L A SD Sbjct: 81 LIVKAQVLLDRAHFYPGAIDGRKGDNYRHALSAFAVAQGLPASEDLTPEIWDKLQATSDK 140 Query: 111 PAIVSYTIVDADVKGPFVKRIPAKMESMKSLPALGYTSPREALAEKFHMSEALLQALNPG 170 PA+ YT+ ++D GP+V+RIP KME L LGYT+PRE LAE+FHMS L+ ALNPG Sbjct: 141 PAVTDYTLTESDAAGPYVERIPPKMEEQAELKTLGYTNPREMLAERFHMSRDLVSALNPG 200 Query: 171 RKFNKAGETIAVANVVDAGNATP----------IARVVVDKTRQTLSTFDAAGKLLGFYP 220 + +KAG TIAVA V G P + R+ VDKT + + F A GKLL +YP Sbjct: 201 KPLDKAGTTIAVAAVEPMGTDKPKAKDLPQEPKVERIEVDKTSRDVRAFGADGKLLAYYP 260 Query: 221 ATVGSADKPTPSGALKVTAINKNPTYRYNPKYAFKGVRSKTPFTIRPGPNNPVGVIWINL 280 A++GS++KP PSG KV + +P Y YNPKYAFKGV+++ FTI+ GPNNPVG++WI+L Sbjct: 261 ASIGSSEKPAPSGETKVKGVAFDPDYTYNPKYAFKGVKAQHKFTIQSGPNNPVGLVWIDL 320 Query: 281 SGEGYGIHGTPDPGKISKAESHGCVRLTNWDVQRVAVGVAKGTPVAFVD 329 + YGIHGTP+P K+ K ESHGC+RLTNW+ + +A V +G V+F D Sbjct: 321 AIPSYGIHGTPEPEKVGKTESHGCIRLTNWNARDLAAHVTRGAKVSFKD 369