BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0041.p (212 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_07027097.1| putative transcriptional regulator, Crp/Fnr f... 145 3e-33 ref|YP_002289168.1| cyclic nucleotide-binding protein [Oligotrop... 145 5e-33 ref|ZP_08629841.1| putative cyclic nucleotide-binding domain-con... 142 2e-32 ref|YP_001638062.1| cyclic nucleotide-binding protein [Methyloba... 142 3e-32 ref|YP_003066259.1| cyclic nucleotide-binding domain [Methylobac... 142 4e-32 >ref|ZP_07027097.1| putative transcriptional regulator, Crp/Fnr family [Afipia sp. 1NLS2] gb|EFI51940.1| putative transcriptional regulator, Crp/Fnr family [Afipia sp. 1NLS2] Length = 221 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 72/189 (38%), Positives = 111/189 (58%) Query: 12 GYLASALVLLTFCMSTMLSLRAVAIFSNLAFISYGLGDGIYPVLILHIILLPLNVVLLFQ 71 G +ASA V+ + M TM+ LR V I +N+ FI Y + YP++ LH+ILLPLNV L + Sbjct: 19 GLIASAFVVAGYTMRTMIPLRVVGIITNVVFIIYAMSHRNYPIVALHMILLPLNVYRLRE 78 Query: 72 MVRLLRKAKRAAATDLSPNWLQPFMQPKHVKAGETIFRKGDDADLLYMVVSGEVRFPEID 131 M+ L+R KR+ + +LS NWL+PFM +H + GE +F K + A ++ +VSG R E Sbjct: 79 MLVLVRNVKRSVSGNLSMNWLKPFMTERHCQPGEVLFYKHERATEMFYIVSGRFRLVESG 138 Query: 132 RGVSAGELFGEIGLFSLERRRTQTAQAATDVDLLWISDGALRKLCERNPGLSLYFLRLTA 191 + G + GE G+ S + RTQT + +L ++ + +L +NP YFLRL + Sbjct: 139 IELPVGSIVGEFGMLSPDNERTQTLECVEKGLVLSVTYQKVEELYVQNPEFGFYFLRLVS 198 Query: 192 TRMTENAAR 200 R+ +N + Sbjct: 199 ARLFQNVGK 207 >ref|YP_002289168.1| cyclic nucleotide-binding protein [Oligotropha carboxidovorans OM5] ref|YP_004632795.1| cyclic nucleotide-binding domain-containing protein [Oligotropha carboxidovorans OM5] gb|ACI93303.1| cyclic nucleotide-binding protein [Oligotropha carboxidovorans OM5] gb|AEI02978.1| cyclic nucleotide-binding domain protein [Oligotropha carboxidovorans OM4] gb|AEI06554.1| cyclic nucleotide-binding domain protein [Oligotropha carboxidovorans OM5] Length = 221 Score = 145 bits (365), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 76/202 (37%), Positives = 118/202 (58%), Gaps = 1/202 (0%) Query: 12 GYLASALVLLTFCMSTMLSLRAVAIFSNLAFISYGLGDGIYPVLILHIILLPLNVVLLFQ 71 G +ASA V+ + M TM+ LR V I +N+ FI + + YP++ LH+ILLPLN+ L + Sbjct: 19 GLIASAFVVAGYTMRTMIPLRIVGIITNIVFIFFAMVHHNYPIVALHVILLPLNIYRLRE 78 Query: 72 MVRLLRKAKRAAATDLSPNWLQPFMQPKHVKAGETIFRKGDDADLLYMVVSGEVRFPEID 131 M+ L+R KR+ ++LS NWL+PFM + +AGE +F K + A ++ +VSG R E Sbjct: 79 MLVLVRNVKRSINSNLSMNWLKPFMTERRCRAGEVLFYKHEPATEMFYIVSGRYRLVESG 138 Query: 132 RGVSAGELFGEIGLFSLERRRTQTAQAATDVDLLWISDGALRKLCERNPGLSLYFLRLTA 191 + G + GE G+ S + RTQT + D +L +S + +L +NP YFLRL + Sbjct: 139 IELPIGAIVGEFGMLSPDNARTQTLECLEDGVVLGVSYQKVEELYVQNPEFGFYFLRLVS 198 Query: 192 TRMTENAAR-TIGVGAMTPSPA 212 R+ +N + V A++ PA Sbjct: 199 ARLFQNVGKLEAQVAALSGKPA 220 >ref|ZP_08629841.1| putative cyclic nucleotide-binding domain-containing protein [Bradyrhizobiaceae bacterium SG-6C] gb|EGP07484.1| putative cyclic nucleotide-binding domain-containing protein [Bradyrhizobiaceae bacterium SG-6C] Length = 217 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 73/189 (38%), Positives = 112/189 (59%) Query: 12 GYLASALVLLTFCMSTMLSLRAVAIFSNLAFISYGLGDGIYPVLILHIILLPLNVVLLFQ 71 G++ASA V+ + M TM+ LR I +N+ I + L YPV++LH+ILLPLNV L + Sbjct: 15 GFIASAFVVAGYTMRTMIPLRIFGIITNVLLIGFSLVHHHYPVMVLHMILLPLNVYRLRE 74 Query: 72 MVRLLRKAKRAAATDLSPNWLQPFMQPKHVKAGETIFRKGDDADLLYMVVSGEVRFPEID 131 M+ L+ + KR+ +DLS WL+PFM + GE +F K + A+ +Y +VSG R E Sbjct: 75 MLLLVAEVKRSVNSDLSMAWLKPFMTERKCTTGEVLFYKHEQAEEMYYIVSGRYRLVESG 134 Query: 132 RGVSAGELFGEIGLFSLERRRTQTAQAATDVDLLWISDGALRKLCERNPGLSLYFLRLTA 191 + AG L GE+G+ S +RTQT + +L ++ +++L +NP YFLRL + Sbjct: 135 IELPAGALVGELGMLSPSNKRTQTLECLEGGLVLSVTYAKVQELYVQNPEFGFYFLRLVS 194 Query: 192 TRMTENAAR 200 R+ +N R Sbjct: 195 ARLFQNLGR 203 >ref|YP_001638062.1| cyclic nucleotide-binding protein [Methylobacterium extorquens PA1] gb|ABY28991.1| cyclic nucleotide-binding [Methylobacterium extorquens PA1] Length = 211 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 75/206 (36%), Positives = 119/206 (57%) Query: 5 MTLIDGLGYLASALVLLTFCMSTMLSLRAVAIFSNLAFISYGLGDGIYPVLILHIILLPL 64 M ++ +GYL +AL + + M TM+ LR VA+ ++ A I+YG G PV++ I +P Sbjct: 1 MNWVEAIGYLGTALTVASSAMGTMIPLRIVALCASCAVITYGYLIGSVPVMLTEAIQIPF 60 Query: 65 NVVLLFQMVRLLRKAKRAAATDLSPNWLQPFMQPKHVKAGETIFRKGDDADLLYMVVSGE 124 N L++MVRL+R+ +RAA+ DLS +WL+ F + +AGE +F KGD A +Y++ SG Sbjct: 61 NAWRLYEMVRLVRETERAASGDLSLDWLKSFGTSRRFRAGEVLFLKGDPAQEMYLIESGR 120 Query: 125 VRFPEIDRGVSAGELFGEIGLFSLERRRTQTAQAATDVDLLWISDGALRKLCERNPGLSL 184 R E V G++ GE+G+ S RRT + +S +++L +NP L Sbjct: 121 FRIAEHGLDVRPGQIVGELGMLSPGNRRTGSLACVEAGTARCLSYSEVKQLYYQNPEFGL 180 Query: 185 YFLRLTATRMTENAARTIGVGAMTPS 210 YFL+LT+ R+ ++AA G P+ Sbjct: 181 YFLKLTSERLFQSAAEAAGAQRTVPA 206 >ref|YP_003066259.1| cyclic nucleotide-binding domain [Methylobacterium extorquens DM4] emb|CAX22206.1| putative cyclic nucleotide-binding domain [Methylobacterium extorquens DM4] Length = 211 Score = 142 bits (357), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 74/206 (35%), Positives = 118/206 (57%) Query: 5 MTLIDGLGYLASALVLLTFCMSTMLSLRAVAIFSNLAFISYGLGDGIYPVLILHIILLPL 64 M ++ +GYL +AL + + M TM+ LR VA+ ++ A I+YG G PV++ I +P Sbjct: 1 MNWVEAIGYLGTALTVASSAMGTMIPLRIVALCASCAVITYGYLIGSVPVMLTEAIQIPF 60 Query: 65 NVVLLFQMVRLLRKAKRAAATDLSPNWLQPFMQPKHVKAGETIFRKGDDADLLYMVVSGE 124 N L++MVRL+R+ +RAA+ DLS +WL+ F + +AGE +F KGD A +Y++ SG Sbjct: 61 NAWRLYEMVRLVRETERAASGDLSLDWLKSFGTSRRFRAGEVLFLKGDPAHEMYLIESGR 120 Query: 125 VRFPEIDRGVSAGELFGEIGLFSLERRRTQTAQAATDVDLLWISDGALRKLCERNPGLSL 184 R E V G++ GE+G+ S RRT + +S +++L +NP Sbjct: 121 FRIAEHGLDVRPGQIVGELGMLSPGNRRTGSLACVEAGSARCLSYSEVKQLYYQNPEFGF 180 Query: 185 YFLRLTATRMTENAARTIGVGAMTPS 210 YFL+LT+ R+ ++AA G P+ Sbjct: 181 YFLKLTSERLFQSAAEAAGAQHTVPA 206