BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0035.p         (125 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_766723.1| hypothetical protein bll0083 [Bradyrhizobium ja...   159   1e-37
ref|YP_004619395.1| hypothetical protein Rta_22780 [Ramlibacter ...   119   2e-25
ref|ZP_03246438.1| conserved hypothetical protein [Francisella n...   111   4e-23
ref|YP_004648000.1| hypothetical protein F7308_1475 [Francisella...   105   2e-21
gb|AEB27658.1| conserved hypothetical protein [Francisella cf. n...   105   3e-21

>ref|NP_766723.1| hypothetical protein bll0083 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC45348.1| bll0083 [Bradyrhizobium japonicum USDA 110]
          Length = 187

 Score =  159 bits (402), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 81/120 (67%), Positives = 94/120 (78%)

Query: 6   VLAIGLDPTFVDLSVMPQFTPELVRSYLDAQIEGLRTLGYDVESCLIDLGDTAEAVTAAA 65
           VLAIG++P   D S  PQ TPELVR+Y++ Q+  LR LGY+V SCLIDL   AEA   AA
Sbjct: 68  VLAIGIEPGVADYSTFPQLTPELVRNYIETQLLRLRGLGYEVTSCLIDLDAAAEAAVTAA 127

Query: 66  LNARRYDCVVIGAGLREPPERLLLFETVLNLVHRLAPDAAICFNTRPADTAAAVQRWVKP 125
           L    +DC+VIGAGLREP +RLLLFE VLNLVHRLAP+AAICFNT PADTA AVQRW++P
Sbjct: 128 LRDESFDCIVIGAGLREPKQRLLLFEKVLNLVHRLAPNAAICFNTTPADTAEAVQRWIEP 187


>ref|YP_004619395.1| hypothetical protein Rta_22780 [Ramlibacter tataouinensis TTB310]
 gb|AEG93376.1| Conserved hypothetical protein [Ramlibacter tataouinensis TTB310]
          Length = 128

 Score =  119 bits (297), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/124 (50%), Positives = 78/124 (62%), Gaps = 6/124 (4%)

Query: 5   SVLAIGLDPTFVDLSVMPQFT-----PELVRSYLDAQIEGLRTLGYDVESCLIDLGDTAE 59
           SVL IGL+PT +D S  P+F         VR+ L +  + L  LGY V+ CL D G+TAE
Sbjct: 6   SVLVIGLEPTLIDFSA-PEFAGTGMDAAKVRAGLQSSADALTRLGYGVQMCLTDFGETAE 64

Query: 60  AVTAAALNARRYDCVVIGAGLREPPERLLLFETVLNLVHRLAPDAAICFNTRPADTAAAV 119
            V    L  R + CVVIGAG+R  P   LLFE ++N+VH  AP A +CFNT+P DTA AV
Sbjct: 65  RVVRDQLRRRPFGCVVIGAGIRTMPSTFLLFEKLVNVVHENAPQARMCFNTQPGDTAEAV 124

Query: 120 QRWV 123
           QRW+
Sbjct: 125 QRWL 128


>ref|ZP_03246438.1| conserved hypothetical protein [Francisella novicida FTG]
 gb|EDZ91190.1| conserved hypothetical protein [Francisella novicida FTG]
          Length = 124

 Score =  111 bits (277), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 51/122 (41%), Positives = 71/122 (58%)

Query: 1   MTKPSVLAIGLDPTFVDLSVMPQFTPELVRSYLDAQIEGLRTLGYDVESCLIDLGDTAEA 60
           M K  VL IG DP  VD S  P  TPE++R  L+  ++ L+ + YD + C I   ++A  
Sbjct: 1   MNKKKVLCIGWDPEVVDYSRYPGVTPEMIRGGLEGDLQKLKDINYDAQMCYILSENSAVE 60

Query: 61  VTAAALNARRYDCVVIGAGLREPPERLLLFETVLNLVHRLAPDAAICFNTRPADTAAAVQ 120
             A  L    +D +++GAG+R+      LFE ++N++H  AP A ICFNT P DT  AVQ
Sbjct: 61  QVANLLKEVSFDIILVGAGVRKDDSCFYLFEKLVNVIHEFAPKAKICFNTEPKDTMEAVQ 120

Query: 121 RW 122
           RW
Sbjct: 121 RW 122


>ref|YP_004648000.1| hypothetical protein F7308_1475 [Francisella sp. TX077308]
 gb|AEI36400.1| hypothetical protein F7308_1475 [Francisella sp. TX077308]
          Length = 124

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/122 (42%), Positives = 72/122 (59%)

Query: 1   MTKPSVLAIGLDPTFVDLSVMPQFTPELVRSYLDAQIEGLRTLGYDVESCLIDLGDTAEA 60
           M K  VL IG +P  VD S  P   PE +RS L+  ++ L  +GYD +   I   ++A  
Sbjct: 1   MDKKKVLCIGWEPNSVDYSKYPGMDPERLRSVLEVDLQKLNDIGYDAQMGYITSEESAVK 60

Query: 61  VTAAALNARRYDCVVIGAGLREPPERLLLFETVLNLVHRLAPDAAICFNTRPADTAAAVQ 120
                L+ RR+D V+IGAG+R+  +   LFE ++N+VH+ A  A ICFNT P D+  AVQ
Sbjct: 61  EVVDLLSNRRFDIVLIGAGVRKDDDCFYLFEKLVNVVHQYATTAKICFNTGPTDSVQAVQ 120

Query: 121 RW 122
           RW
Sbjct: 121 RW 122


>gb|AEB27658.1| conserved hypothetical protein [Francisella cf. novicida Fx1]
          Length = 124

 Score =  105 bits (261), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 50/122 (40%), Positives = 72/122 (59%)

Query: 1   MTKPSVLAIGLDPTFVDLSVMPQFTPELVRSYLDAQIEGLRTLGYDVESCLIDLGDTAEA 60
           M K  VL IG +P  ++ S  P   PE +RS L+  ++ L  +GYD +   I   ++A  
Sbjct: 1   MNKKKVLCIGWEPNSINYSKYPGMDPERLRSVLEGDLQKLNDIGYDAQMGYITSEESAVK 60

Query: 61  VTAAALNARRYDCVVIGAGLREPPERLLLFETVLNLVHRLAPDAAICFNTRPADTAAAVQ 120
                L+ RR+D V+IGAG+R+  +   LFE ++N+VH+ A  A ICFNT P D+  AVQ
Sbjct: 61  EIVDLLSNRRFDIVLIGAGVRKDDDCFYLFEKLVNVVHQYATSAKICFNTGPTDSVQAVQ 120

Query: 121 RW 122
           RW
Sbjct: 121 RW 122