BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0034.p         (177 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_766725.1| hypothetical protein bll0085 [Bradyrhizobium ja...   221   4e-56
ref|ZP_03530548.1| hypothetical protein RetlC8_29621 [Rhizobium ...   216   1e-54
emb|CCA60417.1| RNA polymerase sigma-70 factor, ECF subfamily [S...   191   5e-47
ref|ZP_08512180.1| Sigma-70 region 2 [Paenibacillus sp. HGF7] >g...   187   4e-46
ref|YP_004153937.1| ECF subfamily RNA polymerase sigma-24 subuni...   186   9e-46

>ref|NP_766725.1| hypothetical protein bll0085 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC45350.1| bll0085 [Bradyrhizobium japonicum USDA 110]
          Length = 430

 Score =  221 bits (562), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 115/165 (69%), Positives = 128/165 (77%)

Query: 1   MAARTDASGEPILLMDQNRARWDRLQIRRGQLALARARELGGAGGFYALQAAIAACHAAA 60
           M ARTD  GEPILLMDQ+R  WDRLQI RG  AL RARELGGAG FY LQAAI ACHA A
Sbjct: 257 MHARTDRDGEPILLMDQDRGLWDRLQITRGLRALDRARELGGAGRFYTLQAAIVACHATA 316

Query: 61  GTPDATDWNRIAALYGDLAALLDSPVIELNRAVAIGMAEGPLAALAIVDSLADEPVLKSY 120
            T  +TDW RIA LYG LA L+ SPVIELNRAVA+GMAEGP A L +V+ +ADEP L +Y
Sbjct: 317 ETAASTDWRRIAELYGQLATLVRSPVIELNRAVALGMAEGPQAGLDLVEMIADEPALSTY 376

Query: 121 HLLPSVRGDLLHRLSRFAEAHAAFEAAAALAGNSREREFLKRRAA 165
           H L +VRGDLLHRL RFAEA  +FE AA LA N+RER  ++RRAA
Sbjct: 377 HHLQAVRGDLLHRLGRFAEARLSFETAARLATNARERGLMERRAA 421


>ref|ZP_03530548.1| hypothetical protein RetlC8_29621 [Rhizobium etli CIAT 894]
          Length = 424

 Score =  216 bits (549), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 123/175 (70%), Positives = 137/175 (78%), Gaps = 3/175 (1%)

Query: 2   AARTDASGEPILLMDQNRARWDRLQIRRGQLALARARELGGAGGFYALQAAIAACHAAAG 61
           AARTDA+G+PILL++QNR RWDRLQI+RG  AL RA EL GAGG YALQAAI ACHA A 
Sbjct: 252 AARTDAAGDPILLLEQNRGRWDRLQIQRGLKALTRAEELDGAGGIYALQAAIIACHAKAM 311

Query: 62  TPDATDWNRIAALYGDLAALLDSPVIELNRAVAIGMAEGPLAALAIVDSLADEPVLKSYH 121
           + D TDW RIA LY +LA LL SP+IELNRAVAIGM EGP AAL I++SL DEP LK YH
Sbjct: 312 SADETDWGRIAGLYAELAGLLPSPIIELNRAVAIGMVEGPEAALDIIESLRDEPALKDYH 371

Query: 122 LLPSVRGDLLHRLSRFAEAHAAFEAAAALAGNSREREFLKRRAAIAARAAQDHGC 176
           LLPSVRGDLL++L RF EA  AFEAAAALA N RE +FL RR   A  AA + GC
Sbjct: 372 LLPSVRGDLLYKLGRFDEARRAFEAAAALAENKREHDFLMRR---AGEAAAEKGC 423


>emb|CCA60417.1| RNA polymerase sigma-70 factor, ECF subfamily [Streptomyces
           venezuelae ATCC 10712]
          Length = 658

 Score =  191 bits (484), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 104/164 (63%), Positives = 117/164 (71%)

Query: 2   AARTDASGEPILLMDQNRARWDRLQIRRGQLALARARELGGAGGFYALQAAIAACHAAAG 61
           AART  SGEP+ L +QNR RWD+L IRRG  A+ RARE GG  G Y LQAAIA CHA A 
Sbjct: 247 AARTGPSGEPVRLHEQNRGRWDQLLIRRGFTAMLRAREAGGTPGPYLLQAAIAVCHAQAR 306

Query: 62  TPDATDWNRIAALYGDLAALLDSPVIELNRAVAIGMAEGPLAALAIVDSLADEPVLKSYH 121
           T + TDW RIA LY  LA LL +PV++LNRAVA+GMA GP A L +VDSL  +P L+ YH
Sbjct: 307 TAEDTDWARIAELYAALARLLPTPVVQLNRAVALGMAYGPQAGLDLVDSLVSDPALRDYH 366

Query: 122 LLPSVRGDLLHRLSRFAEAHAAFEAAAALAGNSREREFLKRRAA 165
           LLP VRGDLL RL R  EA   F  AAAL GN+ ER FL RRAA
Sbjct: 367 LLPGVRGDLLLRLGRGGEARREFHRAAALTGNAAERAFLLRRAA 410


>ref|ZP_08512180.1| Sigma-70 region 2 [Paenibacillus sp. HGF7]
 gb|EGL15151.1| Sigma-70 region 2 [Paenibacillus sp. HGF7]
          Length = 421

 Score =  187 bits (476), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 102/163 (62%), Positives = 117/163 (71%)

Query: 3   ARTDASGEPILLMDQNRARWDRLQIRRGQLALARARELGGAGGFYALQAAIAACHAAAGT 62
            R  A+GEP+LLMDQNRA+WDRL IRRG  AL R+R+LG   G YALQAAI+ACHA A  
Sbjct: 251 TRIGAAGEPVLLMDQNRAQWDRLLIRRGLAALERSRKLGRPLGPYALQAAISACHAEALN 310

Query: 63  PDATDWNRIAALYGDLAALLDSPVIELNRAVAIGMAEGPLAALAIVDSLADEPVLKSYHL 122
              TDW RIAALY  L+    SP++ELNRAVAI MA GP   L IVD L+ EP LK YHL
Sbjct: 311 AAETDWIRIAALYEALSRAAPSPIVELNRAVAIAMAFGPAFGLQIVDELSGEPALKGYHL 370

Query: 123 LPSVRGDLLHRLSRFAEAHAAFEAAAALAGNSREREFLKRRAA 165
           LPSVRGDLL +L R  EA A FE AA++  N+RER+ L  RAA
Sbjct: 371 LPSVRGDLLVKLGRLGEARAEFERAASMTRNARERDLLLSRAA 413


>ref|YP_004153937.1| ECF subfamily RNA polymerase sigma-24 subunit [Variovorax paradoxus
           EPS]
 gb|ADU35826.1| putative RNA polymerase, sigma-24 subunit, ECF subfamily
           [Variovorax paradoxus EPS]
          Length = 427

 Score =  186 bits (473), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 102/163 (62%), Positives = 120/163 (73%), Gaps = 1/163 (0%)

Query: 2   AARTDASGEPILLMDQNRARWDRLQIRRGQLALARARELGGAGGFYALQAAIAACHAAAG 61
           AAR  ASGEP+LL++QNRARWD++ IRRG   LARA  LG A G YALQAAIAACH  A 
Sbjct: 261 AARVGASGEPVLLLEQNRARWDQMLIRRGLAGLARAEALG-ALGPYALQAAIAACHGRAR 319

Query: 62  TPDATDWNRIAALYGDLAALLDSPVIELNRAVAIGMAEGPLAALAIVDSLADEPVLKSYH 121
           T + TDW RIAALY  LA L  SP++ELNRAVA+ MA GP A L +VD+L DEP LK YH
Sbjct: 320 TAEETDWPRIAALYDALAELAPSPIVELNRAVALSMAFGPAAGLEVVDALMDEPALKGYH 379

Query: 122 LLPSVRGDLLHRLSRFAEAHAAFEAAAALAGNSREREFLKRRA 164
           LLP+VRGDLL +L R  EA   F+ AA+L  N+RE+  L+ RA
Sbjct: 380 LLPTVRGDLLFKLGRRDEARKEFDRAASLTRNTREQALLRARA 422