BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0033.p (258 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_03530548.1| hypothetical protein RetlC8_29621 [Rhizobium ... 374 e-102 ref|NP_766725.1| hypothetical protein bll0085 [Bradyrhizobium ja... 372 e-101 ref|YP_001019216.1| putative RNA polymerase sigma factor [Methyl... 310 1e-82 ref|YP_525256.1| putative sigma factor [Rhodoferax ferrireducens... 309 3e-82 ref|ZP_08405917.1| putative sigma factor [Hylemonella gracilis A... 303 1e-80 >ref|ZP_03530548.1| hypothetical protein RetlC8_29621 [Rhizobium etli CIAT 894] Length = 424 Score = 374 bits (961), Expect = e-102, Method: Compositional matrix adjust. Identities = 192/246 (78%), Positives = 213/246 (86%) Query: 1 MTAADIQATILAVWRIEQPRLITSLSRMLRDVPLAEDLTQEALVAALEHWPADGVPEKPG 60 MTAAD TILAVWRIEQPRLITSL+R+LRDVPLAEDLTQEAL ALE WP G+PE+PG Sbjct: 1 MTAADTHQTILAVWRIEQPRLITSLARLLRDVPLAEDLTQEALTVALERWPKTGIPERPG 60 Query: 61 AWLMATAKRRALDHLRRNRMLAEKHGVIAHDLAREQETMPDFDAALDDDIGDELLRLIFT 120 AWLM TAKRRA DHLRR RML +KH +I ++ E++ MPD D LDDDIGDE+LRLIFT Sbjct: 61 AWLMTTAKRRAFDHLRRRRMLDQKHQMIVREMEEEEQIMPDLDTPLDDDIGDEMLRLIFT 120 Query: 121 ACHPRLSREARAALALRMICGLTTEEIARAFLQAEATIAQRIVRAKRTLSESGFAYETPR 180 ACHP +SREAR ALALRMICGLTT+EIARA+L +EATIAQRI+RAK+TLS+SG AYETP Sbjct: 121 ACHPLISREARVALALRMICGLTTQEIARAYLVSEATIAQRILRAKKTLSDSGLAYETPH 180 Query: 181 GEELSERLASVLEVVYLIFNEGYTAASGDEWLRPQLCNEALRMGRVLTSIAPSEPEAHGL 240 GEELS+RLASVLEVVYLIFNEGYTAA GD W R QLCNEALR+GRVLTS+AP EPEAH L Sbjct: 181 GEELSQRLASVLEVVYLIFNEGYTAARGDNWFRLQLCNEALRLGRVLTSVAPLEPEAHAL 240 Query: 241 LALMEF 246 LALME Sbjct: 241 LALMEL 246 >ref|NP_766725.1| hypothetical protein bll0085 [Bradyrhizobium japonicum USDA 110] dbj|BAC45350.1| bll0085 [Bradyrhizobium japonicum USDA 110] Length = 430 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 189/253 (74%), Positives = 211/253 (83%), Gaps = 4/253 (1%) Query: 1 MTAADIQATILAV----WRIEQPRLITSLSRMLRDVPLAEDLTQEALVAALEHWPADGVP 56 MTAADI I A WR+ QPRLI +LSRMLRDV LAE+LTQ+ALVAALE WP GVP Sbjct: 3 MTAADIDHAIRAAIHAAWRVVQPRLIATLSRMLRDVTLAEELTQDALVAALEAWPLSGVP 62 Query: 57 EKPGAWLMATAKRRALDHLRRNRMLAEKHGVIAHDLAREQETMPDFDAALDDDIGDELLR 116 + PGAWL+ATAKRRALDHLRR +ML K ++ H+L +EQ+ MPDFD ALDDDIGDE LR Sbjct: 63 DNPGAWLVATAKRRALDHLRRAKMLTRKQDLLTHELMQEQDAMPDFDTALDDDIGDEWLR 122 Query: 117 LIFTACHPRLSREARAALALRMICGLTTEEIARAFLQAEATIAQRIVRAKRTLSESGFAY 176 LIFTACHP L R+ARAALALRMICGLTT+EIARAFL +EATIAQRIVRAKRTLS SG Y Sbjct: 123 LIFTACHPLLPRQARAALALRMICGLTTDEIARAFLVSEATIAQRIVRAKRTLSRSGLTY 182 Query: 177 ETPRGEELSERLASVLEVVYLIFNEGYTAASGDEWLRPQLCNEALRMGRVLTSIAPSEPE 236 ETP GE LSERLASVLEVVYLIFNEGY+A+ G+EWLRPQLC+EALRMGRVL +AP EPE Sbjct: 183 ETPGGEALSERLASVLEVVYLIFNEGYSASRGEEWLRPQLCDEALRMGRVLVGLAPLEPE 242 Query: 237 AHGLLALMEFXLA 249 HGL+ALM+ A Sbjct: 243 VHGLMALMDLNAA 255 >ref|YP_001019216.1| putative RNA polymerase sigma factor [Methylibium petroleiphilum PM1] gb|ABM92981.1| putative RNA polymerase sigma factor [Methylibium petroleiphilum PM1] Length = 428 Score = 310 bits (794), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 157/251 (62%), Positives = 192/251 (76%), Gaps = 5/251 (1%) Query: 1 MTAADIQATILAVWRIEQPRLITSLSRMLRDVPLAEDLTQEALVAALEHWPADGVPEKPG 60 M D Q I AVWRIE +++ ++RM+RDV +AE+L Q+ALVAALEHWP DG+P+KPG Sbjct: 1 MATTDTQRAIDAVWRIESAKIVAVVARMVRDVGVAEELAQDALVAALEHWPVDGLPDKPG 60 Query: 61 AWLMATAKRRALDHLRRNRMLAEKHGVIAHDL-AREQETMPDF----DAALDDDIGDELL 115 AWLM TAK RALD LR++ + A K + DL A + +PDF DAA DDIGD+LL Sbjct: 61 AWLMTTAKHRALDRLRQDALHARKQQELGADLDALQAGVVPDFVDALDAARQDDIGDDLL 120 Query: 116 RLIFTACHPRLSREARAALALRMICGLTTEEIARAFLQAEATIAQRIVRAKRTLSESGFA 175 RLIFTACHP L EAR AL LR++ GL+T+EIARAFL EATIAQRIVRAKRTLS + Sbjct: 121 RLIFTACHPVLGTEARVALTLRLLGGLSTDEIARAFLAPEATIAQRIVRAKRTLSAARVP 180 Query: 176 YETPRGEELSERLASVLEVVYLIFNEGYTAASGDEWLRPQLCNEALRMGRVLTSIAPSEP 235 +E P+ +E + RLASVLEVVYLIFNEGY+A +GD+W+RP LC+EALR+GRVL +AP EP Sbjct: 181 FEVPQAQERAPRLASVLEVVYLIFNEGYSATAGDDWMRPALCDEALRLGRVLAGLAPDEP 240 Query: 236 EAHGLLALMEF 246 E HGL+ALME Sbjct: 241 EVHGLVALMEI 251 >ref|YP_525256.1| putative sigma factor [Rhodoferax ferrireducens T118] gb|ABD71725.1| putative sigma factor [Rhodoferax ferrireducens T118] Length = 436 Score = 309 bits (791), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 159/258 (61%), Positives = 195/258 (75%), Gaps = 5/258 (1%) Query: 1 MTAADIQATILAVWRIEQPRLITSLSRMLRDVPLAEDLTQEALVAALEHWPADGVPEKPG 60 M A+ Q ++ A+WRIE +I +++RM+RD+ LAE+L Q+ALVAALEHWPADGVP P Sbjct: 1 MVASLTQLSLEAIWRIEGASIIAAVARMVRDIGLAEELAQDALVAALEHWPADGVPHNPA 60 Query: 61 AWLMATAKRRALDHLRRNRMLAEKHGVIAHDL-AREQETMPDF----DAALDDDIGDELL 115 AWLM TA+ RALDHLRR RML EKH I H+L A+E +PDF DAA D IGD+LL Sbjct: 61 AWLMTTARNRALDHLRRARMLLEKHDQIGHELEAQEALIVPDFVDALDAARSDQIGDDLL 120 Query: 116 RLIFTACHPRLSREARAALALRMICGLTTEEIARAFLQAEATIAQRIVRAKRTLSESGFA 175 RLIFTACHP LS EAR AL L+++ GL+T EIARA L E T+AQRIVRAKRTL+E+ Sbjct: 121 RLIFTACHPVLSTEARVALTLKLLGGLSTAEIARACLVPEPTVAQRIVRAKRTLTEAHVP 180 Query: 176 YETPRGEELSERLASVLEVVYLIFNEGYTAASGDEWLRPQLCNEALRMGRVLTSIAPSEP 235 +E P+G+ L RL SVLEV+YLIFNEGYTA SG EW+RP L +EA+R+GRVL ++AP E Sbjct: 181 FELPQGDALRPRLGSVLEVIYLIFNEGYTATSGGEWMRPALTDEAVRLGRVLAALAPREA 240 Query: 236 EAHGLLALMEFXLADGGA 253 E HGL+ALME + GA Sbjct: 241 EVHGLVALMELQASRAGA 258 >ref|ZP_08405917.1| putative sigma factor [Hylemonella gracilis ATCC 19624] gb|EGI76816.1| putative sigma factor [Hylemonella gracilis ATCC 19624] Length = 433 Score = 303 bits (776), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 157/251 (62%), Positives = 194/251 (77%), Gaps = 6/251 (2%) Query: 1 MTAADIQATILAVWRIEQPRLITSLSRMLRDVPLAEDLTQEALVAALEHWPADGVPEKPG 60 M +A QA I AVWRIE R++ ++RM+RD+ +AE+L Q+ALVAALEHWP +G+P+KPG Sbjct: 1 MHSATHQA-IAAVWRIESARIVAVVARMVRDLGVAEELAQDALVAALEHWPREGIPDKPG 59 Query: 61 AWLMATAKRRALDHLRRNRMLAEKHGVIAHDL-AREQETMPDF----DAALDDDIGDELL 115 AWL TAKRRALDHLR +M +K + DL A+E +PDF DAA DDIGD+LL Sbjct: 60 AWLTTTAKRRALDHLRHGKMRDDKLQQLGADLEAQEALVVPDFVDALDAARQDDIGDDLL 119 Query: 116 RLIFTACHPRLSREARAALALRMICGLTTEEIARAFLQAEATIAQRIVRAKRTLSESGFA 175 RLIFTACHP LS EAR AL LR++ GL+T EIARAFL +E TIAQRIVRAKRTL+E+ Sbjct: 120 RLIFTACHPVLSAEARVALTLRLLGGLSTHEIARAFLASEPTIAQRIVRAKRTLAEAQVP 179 Query: 176 YETPRGEELSERLASVLEVVYLIFNEGYTAASGDEWLRPQLCNEALRMGRVLTSIAPSEP 235 YE PRG EL+ RLASVLEV+YL+FNEGYTA +G++W+RP L EALR+ R+L +AP EP Sbjct: 180 YEVPRGAELAPRLASVLEVIYLVFNEGYTATAGEDWMRPALTQEALRLARMLAELAPREP 239 Query: 236 EAHGLLALMEF 246 EA GL+AL+E Sbjct: 240 EAQGLVALLEL 250