BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0030.p (327 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_766728.1| glycerate dehydrogenase [Bradyrhizobium japonic... 573 e-161 ref|YP_575779.1| D-isomer specific 2-hydroxyacid dehydrogenase, ... 514 e-143 ref|YP_779046.1| D-isomer specific 2-hydroxyacid dehydrogenase [... 511 e-143 ref|YP_567398.1| D-isomer specific 2-hydroxyacid dehydrogenase [... 508 e-142 ref|YP_530467.1| D-isomer specific 2-hydroxyacid dehydrogenase [... 507 e-141 >ref|NP_766728.1| glycerate dehydrogenase [Bradyrhizobium japonicum USDA 110] dbj|BAC45353.1| oxidoreductase [Bradyrhizobium japonicum USDA 110] Length = 329 Score = 573 bits (1478), Expect = e-161, Method: Compositional matrix adjust. Identities = 278/324 (85%), Positives = 301/324 (92%) Query: 4 ISSEKIDLLIYGPIRPILENGFPDQFVLHRAESRGDLERLTPDTLAKIRGIAVTYHTMAT 63 ISSEKIDLLIYGP+RPILENGF D FV+H+AE+RGDLERLTP KIRG+AVTYHT+ Sbjct: 6 ISSEKIDLLIYGPVRPILENGFSDHFVVHKAETRGDLERLTPAIREKIRGVAVTYHTVRA 65 Query: 64 DKTALALFPKLEIVGSFGVGYDHVDSAYARDHNIVVTNTPDVLTEEVADVAMGLLIATLR 123 D+ +L+ PK+E+V SFGVGYDHVD+ YA +HNI+VTNTPDVLTEEVADVAMGLLI+T+R Sbjct: 66 DRDSLSQLPKIEMVASFGVGYDHVDAKYAAEHNIIVTNTPDVLTEEVADVAMGLLISTVR 125 Query: 124 EFVKADRYVRSGLWQTQNYPLSVGSLRDRKIGIVGMGRIGQAIGRRLDASRVPVSYHSRN 183 EF+KADRYVRSGLWQTQNYPLSVGSLRDRK+GIVGMGRIGQAI RRLDAS VPV YHSRN Sbjct: 126 EFIKADRYVRSGLWQTQNYPLSVGSLRDRKVGIVGMGRIGQAIARRLDASLVPVVYHSRN 185 Query: 184 PSKDVSYKHYPDLIEMAKAVDTLIVIVPGGASTAKMINADVLKALGPRGVLINVARGSVV 243 PSKDVSYKHYPDLIEMAKAVDTL+VIVPGGAST KMINA+VLKALGPRGVLINVARGSVV Sbjct: 186 PSKDVSYKHYPDLIEMAKAVDTLMVIVPGGASTNKMINAEVLKALGPRGVLINVARGSVV 245 Query: 244 DEPALVAALKSGTILAAGLDVFAAEPNVPDELKAMQNVVLLPHIGSASVVTRNAMDQLVV 303 DEPALV ALKSGTILAAGLDVFAAEP+VPDELK+MQNVVLLPHIGSASVVTRNAMDQLVV Sbjct: 246 DEPALVQALKSGTILAAGLDVFAAEPSVPDELKSMQNVVLLPHIGSASVVTRNAMDQLVV 305 Query: 304 DNIKNWFAGKPPLTPVAETPVKDR 327 DN+K WFAGK PLTPVAETP K R Sbjct: 306 DNLKAWFAGKAPLTPVAETPFKGR 329 >ref|YP_575779.1| D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding [Nitrobacter hamburgensis X14] gb|ABE61319.1| D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein [Nitrobacter hamburgensis X14] Length = 327 Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust. Identities = 248/326 (76%), Positives = 286/326 (87%), Gaps = 1/326 (0%) Query: 2 APISSEKIDLLIYGPIRPILENGFPDQFVLHRAESRGDLERLTPDTLAKIRGIAVTYHTM 61 AP+S EKIDLL+YGP RPI++NGF DQFVLH E + DLERLTP KIRG+A+T ++ Sbjct: 3 APVSPEKIDLLVYGPHRPIVDNGFTDQFVLHHCEKQADLERLTPAVAGKIRGMAIT-DSV 61 Query: 62 ATDKTALALFPKLEIVGSFGVGYDHVDSAYARDHNIVVTNTPDVLTEEVADVAMGLLIAT 121 TA FPKLEI+ SFGVGYDH+D+ +AR+HNIVVTNTPDVLTEEVADVA+GLLIAT Sbjct: 62 PCRSTAQTRFPKLEIMSSFGVGYDHIDTDHAREHNIVVTNTPDVLTEEVADVAIGLLIAT 121 Query: 122 LREFVKADRYVRSGLWQTQNYPLSVGSLRDRKIGIVGMGRIGQAIGRRLDASRVPVSYHS 181 LREFVKADRYVR GLW TQ++PLS GSLRDRK+G+VGMGRIGQAI RRLDA+RVPV YH+ Sbjct: 122 LREFVKADRYVREGLWATQDFPLSAGSLRDRKVGMVGMGRIGQAIARRLDAARVPVVYHA 181 Query: 182 RNPSKDVSYKHYPDLIEMAKAVDTLIVIVPGGASTAKMINADVLKALGPRGVLINVARGS 241 RNP+ VSY+HYP+LIEMAKAVDTLIVI PGGAST KMI+ADVL ALGPRGV++N+ARGS Sbjct: 182 RNPAAGVSYQHYPNLIEMAKAVDTLIVITPGGASTLKMIDADVLAALGPRGVIVNMARGS 241 Query: 242 VVDEPALVAALKSGTILAAGLDVFAAEPNVPDELKAMQNVVLLPHIGSASVVTRNAMDQL 301 V+DEPAL+ ALKSG LAAGLDVFA EP+VP+EL+A+QNVVLLPHIGSASVVTR+ MDQL Sbjct: 242 VIDEPALIHALKSGITLAAGLDVFANEPDVPEELRALQNVVLLPHIGSASVVTRDVMDQL 301 Query: 302 VVDNIKNWFAGKPPLTPVAETPVKDR 327 VVDN++ WFAGKPPLTPV ETPV+ R Sbjct: 302 VVDNLRAWFAGKPPLTPVPETPVEGR 327 >ref|YP_779046.1| D-isomer specific 2-hydroxyacid dehydrogenase [Rhodopseudomonas palustris BisA53] gb|ABJ04066.1| D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein [Rhodopseudomonas palustris BisA53] Length = 326 Score = 511 bits (1316), Expect = e-143, Method: Compositional matrix adjust. Identities = 250/327 (76%), Positives = 285/327 (87%), Gaps = 1/327 (0%) Query: 1 MAPISSEKIDLLIYGPIRPILENGFPDQFVLHRAESRGDLERLTPDTLAKIRGIAVTYHT 60 MA S+KIDLLIYGP +P++ +GF D+FVLH+ + LERL P A+IRG+AVT Sbjct: 1 MAAGPSQKIDLLIYGPNKPLVNDGFSDRFVLHKVAEQAGLERLAPAFAAQIRGVAVT-GL 59 Query: 61 MATDKTALALFPKLEIVGSFGVGYDHVDSAYARDHNIVVTNTPDVLTEEVADVAMGLLIA 120 + + +LA FPK+EI+ SFGVGYDHVD YARDH IVVTNTPDVLTEEVAD A+GLLIA Sbjct: 60 VPANGASLARFPKVEIIASFGVGYDHVDIGYARDHGIVVTNTPDVLTEEVADTALGLLIA 119 Query: 121 TLREFVKADRYVRSGLWQTQNYPLSVGSLRDRKIGIVGMGRIGQAIGRRLDASRVPVSYH 180 TLREF++ADRYVRSGLWQ+QN+PLS GSLRDRK+G+VGMGRIGQAIGRRLDASRVPV YH Sbjct: 120 TLREFIQADRYVRSGLWQSQNFPLSTGSLRDRKVGVVGMGRIGQAIGRRLDASRVPVVYH 179 Query: 181 SRNPSKDVSYKHYPDLIEMAKAVDTLIVIVPGGASTAKMINADVLKALGPRGVLINVARG 240 SR P++ VSY+HYP+LI MAK VDTLIVI PGG +TA +INA+VL+ALGPRGVLINVARG Sbjct: 180 SRKPARGVSYQHYPNLIAMAKDVDTLIVITPGGPATANLINAEVLRALGPRGVLINVARG 239 Query: 241 SVVDEPALVAALKSGTILAAGLDVFAAEPNVPDELKAMQNVVLLPHIGSASVVTRNAMDQ 300 SVVDEPAL+AALKSGTILAAGLDVFA EP VP+EL+AM NVVLLPHIGSASVVTRNAMDQ Sbjct: 240 SVVDEPALIAALKSGTILAAGLDVFANEPKVPEELRAMSNVVLLPHIGSASVVTRNAMDQ 299 Query: 301 LVVDNIKNWFAGKPPLTPVAETPVKDR 327 LVVDN+K WFAGKPPLTPV+ETPVK R Sbjct: 300 LVVDNLKAWFAGKPPLTPVSETPVKGR 326 >ref|YP_567398.1| D-isomer specific 2-hydroxyacid dehydrogenase [Rhodopseudomonas palustris BisB5] gb|ABE37497.1| D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding [Rhodopseudomonas palustris BisB5] Length = 328 Score = 508 bits (1307), Expect = e-142, Method: Compositional matrix adjust. Identities = 245/323 (75%), Positives = 286/323 (88%), Gaps = 1/323 (0%) Query: 5 SSEKIDLLIYGPIRPILENGFPDQFVLHRAESRGDLERLTPDTLAKIRGIAVTYHTMATD 64 +++KIDLLIYGP +P++ +GFP+Q+ LH+ E GDL+RLT D A+IRG+AVT + T+ Sbjct: 7 ATDKIDLLIYGPSKPVINDGFPEQYALHKCEQPGDLDRLTDDIRARIRGVAVT-GLVPTN 65 Query: 65 KTALALFPKLEIVGSFGVGYDHVDSAYARDHNIVVTNTPDVLTEEVADVAMGLLIATLRE 124 + LA +PKLEIV SFGVGYDH+DS +A +H++VVTNTPDVLTEEVAD A+GLLIATLRE Sbjct: 66 SSVLARYPKLEIVSSFGVGYDHIDSGWAAEHDVVVTNTPDVLTEEVADTALGLLIATLRE 125 Query: 125 FVKADRYVRSGLWQTQNYPLSVGSLRDRKIGIVGMGRIGQAIGRRLDASRVPVSYHSRNP 184 FV+AD+YVRSG W TQ YPLSVGSLRDRK+G++GMGRIGQAI RRLDASRVPV YH+RNP Sbjct: 126 FVRADKYVRSGSWLTQPYPLSVGSLRDRKVGLIGMGRIGQAIARRLDASRVPVVYHARNP 185 Query: 185 SKDVSYKHYPDLIEMAKAVDTLIVIVPGGASTAKMINADVLKALGPRGVLINVARGSVVD 244 + VSY+HYPDLI MAK VDTLIVI+PGGASTA++INA+VL+ALGPRGVLINVARGSVVD Sbjct: 186 AAGVSYQHYPDLIAMAKDVDTLIVIIPGGASTARLINAEVLQALGPRGVLINVARGSVVD 245 Query: 245 EPALVAALKSGTILAAGLDVFAAEPNVPDELKAMQNVVLLPHIGSASVVTRNAMDQLVVD 304 EPAL+AALKSG ILAAGLDVFA EP VPDEL+ MQNV+LLPHIGSASVVTRNAMDQLVVD Sbjct: 246 EPALIAALKSGAILAAGLDVFADEPKVPDELRMMQNVILLPHIGSASVVTRNAMDQLVVD 305 Query: 305 NIKNWFAGKPPLTPVAETPVKDR 327 NIK WF GKPPLTP+ ETPV+ R Sbjct: 306 NIKAWFDGKPPLTPIPETPVRGR 328 >ref|YP_530467.1| D-isomer specific 2-hydroxyacid dehydrogenase [Rhodopseudomonas palustris BisB18] gb|ABD86148.1| D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding [Rhodopseudomonas palustris BisB18] Length = 326 Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust. Identities = 243/327 (74%), Positives = 288/327 (88%), Gaps = 1/327 (0%) Query: 1 MAPISSEKIDLLIYGPIRPILENGFPDQFVLHRAESRGDLERLTPDTLAKIRGIAVTYHT 60 M +SSE++DLL+YGP +P+++ GFPD+F LH+AE DLERL PD A+IRG+AVT Sbjct: 1 MPDVSSEQVDLLLYGPDKPLIDAGFPDRFGLHKAEQLADLERLAPDIAARIRGVAVTGLV 60 Query: 61 MATDKTALALFPKLEIVGSFGVGYDHVDSAYARDHNIVVTNTPDVLTEEVADVAMGLLIA 120 A+ LA FPKLEIV SFGVGYDHVD+ YAR+H IVVTNTPDVLTEEVADVA+GLLIA Sbjct: 61 PASGAV-LARFPKLEIVSSFGVGYDHVDAGYAREHGIVVTNTPDVLTEEVADVALGLLIA 119 Query: 121 TLREFVKADRYVRSGLWQTQNYPLSVGSLRDRKIGIVGMGRIGQAIGRRLDASRVPVSYH 180 TLREF+ ADR+VR+G WQ+QN+PLS GSLRDR +GIVGMGRIGQAIGRRL+AS+VPV YH Sbjct: 120 TLREFIAADRHVRTGAWQSQNFPLSTGSLRDRSVGIVGMGRIGQAIGRRLEASKVPVVYH 179 Query: 181 SRNPSKDVSYKHYPDLIEMAKAVDTLIVIVPGGASTAKMINADVLKALGPRGVLINVARG 240 SR+P+ V Y+HYP+LIEMAKAVDTL+VI+PGGA+TAK+INA+VL ALGPRGV++NVARG Sbjct: 180 SRHPAAGVGYRHYPNLIEMAKAVDTLVVIIPGGAATAKLINAEVLAALGPRGVVVNVARG 239 Query: 241 SVVDEPALVAALKSGTILAAGLDVFAAEPNVPDELKAMQNVVLLPHIGSASVVTRNAMDQ 300 SV+DEPAL+ AL++GTI AAGLDVFA EPNVP+EL+A+ NVVLLPHIGSASVVTRNAMDQ Sbjct: 240 SVIDEPALITALQTGTIQAAGLDVFADEPNVPEELRALPNVVLLPHIGSASVVTRNAMDQ 299 Query: 301 LVVDNIKNWFAGKPPLTPVAETPVKDR 327 LVVDN+ WF G+PPLTP+AETPVKDR Sbjct: 300 LVVDNLTAWFDGQPPLTPIAETPVKDR 326