BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0029.p (262 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_575778.1| binding-protein-dependent transport systems inn... 375 e-102 ref|YP_316952.1| binding-protein dependent transport system inne... 370 e-100 ref|YP_001202871.1| ABC transporter permease [Bradyrhizobium sp.... 357 7e-97 ref|ZP_01044460.1| Binding-protein-dependent transport systems i... 357 8e-97 ref|NP_766729.1| ABC transporter permease protein [Bradyrhizobiu... 357 9e-97 >ref|YP_575778.1| binding-protein-dependent transport systems inner membrane component [Nitrobacter hamburgensis X14] gb|ABE61318.1| binding-protein-dependent transport systems inner membrane component [Nitrobacter hamburgensis X14] Length = 279 Score = 375 bits (962), Expect = e-102, Method: Compositional matrix adjust. Identities = 209/261 (80%), Positives = 232/261 (88%) Query: 2 KSPQDIVRFLLPLAVFAAGLVLWEAIVRGYGIQPYVLPSPLLVLKTLVADWPVLSQSLGV 61 S R LLP+AV AAG+++W+ +VR GI PYVLP P+LV TLV DWP+L QSL Sbjct: 19 DSRTSAARVLLPVAVLAAGVLVWDLVVRINGIPPYVLPGPMLVAATLVQDWPILWQSLLT 78 Query: 62 TLLTTLEGFVAAAIGGIVLALLFNQSKWLEYSLFPYAVVLQVTPVIAIAPLLLIYLQQQT 121 TLLTT EGF AA +GG+ LALLFNQSKWLE++L PYA++LQVTPVIAIAPLLLIYL QQT Sbjct: 79 TLLTTGEGFAAATVGGVALALLFNQSKWLEHALLPYAIILQVTPVIAIAPLLLIYLPQQT 138 Query: 122 AVIVCAWIVAFFPVLSNTTLGLNSVDRNLAGLFQLYGASQLQTLLFLKLPAALPYILGGL 181 AV+VCAWIVAFFPVLSNTTLGLNSVDRNLAGLFQLYGAS++QTL +LKLPAALPYILGGL Sbjct: 139 AVVVCAWIVAFFPVLSNTTLGLNSVDRNLAGLFQLYGASRMQTLRYLKLPAALPYILGGL 198 Query: 182 RIAGGLSLIGAVVAEIAAGSAGAGSGLAFRIAESGYRLNIPRMFAALLLLSLAGIVIYGL 241 RIAGGLSLIGAVVAEIAAGSAGAGSGLA+RIAESGYRLNIPRMFAALLLLS+AGIVIY Sbjct: 199 RIAGGLSLIGAVVAEIAAGSAGAGSGLAYRIAESGYRLNIPRMFAALLLLSVAGIVIYMC 258 Query: 242 LALVSHLLLRRWHESALGKDS 262 LA VSHL+LRRWHESALGK++ Sbjct: 259 LAAVSHLMLRRWHESALGKEN 279 >ref|YP_316952.1| binding-protein dependent transport system inner membrane protein [Nitrobacter winogradskyi Nb-255] gb|ABA03600.1| Binding-protein-dependent transport systems inner membrane component [Nitrobacter winogradskyi Nb-255] Length = 278 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 208/255 (81%), Positives = 229/255 (89%) Query: 8 VRFLLPLAVFAAGLVLWEAIVRGYGIQPYVLPSPLLVLKTLVADWPVLSQSLGVTLLTTL 67 VR LLPLAV G++ W+A+VR I PYVLP P LV TLV DWP+L +SL TLLTT+ Sbjct: 24 VRVLLPLAVLGVGVLAWDALVRFKDIPPYVLPGPGLVAATLVQDWPILWRSLLTTLLTTM 83 Query: 68 EGFVAAAIGGIVLALLFNQSKWLEYSLFPYAVVLQVTPVIAIAPLLLIYLQQQTAVIVCA 127 EGF+AAAIGG+ LALLFNQSKWLE +L PYA++LQVTPVIAIAPLLLIYL QQTAV+VCA Sbjct: 84 EGFIAAAIGGVALALLFNQSKWLEQALLPYAIILQVTPVIAIAPLLLIYLPQQTAVVVCA 143 Query: 128 WIVAFFPVLSNTTLGLNSVDRNLAGLFQLYGASQLQTLLFLKLPAALPYILGGLRIAGGL 187 WIVAFFPVLSNTTLGLNSVDRNLAGLF+LYGAS++QTL +LKLPAALPYILGGLRIAGGL Sbjct: 144 WIVAFFPVLSNTTLGLNSVDRNLAGLFRLYGASRMQTLRYLKLPAALPYILGGLRIAGGL 203 Query: 188 SLIGAVVAEIAAGSAGAGSGLAFRIAESGYRLNIPRMFAALLLLSLAGIVIYGLLALVSH 247 SLIGAVVAEIAAGSAGAGSGLA+RIAESGYRLNIPRMFAALLLLS+AGIVIY LA VSH Sbjct: 204 SLIGAVVAEIAAGSAGAGSGLAYRIAESGYRLNIPRMFAALLLLSVAGIVIYMCLAAVSH 263 Query: 248 LLLRRWHESALGKDS 262 L+LRRWHESALGK+ Sbjct: 264 LMLRRWHESALGKEK 278 >ref|YP_001202871.1| ABC transporter permease [Bradyrhizobium sp. ORS 278] emb|CAL74631.1| Putative ABC transporter, permease protein [Bradyrhizobium sp. ORS 278] Length = 268 Score = 357 bits (917), Expect = 7e-97, Method: Compositional matrix adjust. Identities = 212/251 (84%), Positives = 228/251 (90%) Query: 12 LPLAVFAAGLVLWEAIVRGYGIQPYVLPSPLLVLKTLVADWPVLSQSLGVTLLTTLEGFV 71 P VF A + WE +VR GIQPYVLP PLLVLKTLV DW +L+QSL TL+TTLEGF Sbjct: 18 FPAVVFIAAMTAWELVVRVNGIQPYVLPGPLLVLKTLVNDWDILAQSLLTTLITTLEGFT 77 Query: 72 AAAIGGIVLALLFNQSKWLEYSLFPYAVVLQVTPVIAIAPLLLIYLQQQTAVIVCAWIVA 131 AAA+GGI LALLFNQS+WLE++LFPYAVVLQVTPVIAIAPLLLIYL QQTAV+ CAWIV Sbjct: 78 AAALGGIALALLFNQSRWLEWALFPYAVVLQVTPVIAIAPLLLIYLPQQTAVVTCAWIVG 137 Query: 132 FFPVLSNTTLGLNSVDRNLAGLFQLYGASQLQTLLFLKLPAALPYILGGLRIAGGLSLIG 191 FFPVLSNT LGLNSVDRNLAGLFQLYGAS+ QTL +LKLPAALPYILGGLRIAGGLSLIG Sbjct: 138 FFPVLSNTALGLNSVDRNLAGLFQLYGASRWQTLRYLKLPAALPYILGGLRIAGGLSLIG 197 Query: 192 AVVAEIAAGSAGAGSGLAFRIAESGYRLNIPRMFAALLLLSLAGIVIYGLLALVSHLLLR 251 AVVAEIAAGSAGAGSGLA+RIAESGYRLNIPRMFAAL+LLS+AGIVIYGLLALVSHL+LR Sbjct: 198 AVVAEIAAGSAGAGSGLAYRIAESGYRLNIPRMFAALVLLSVAGIVIYGLLALVSHLVLR 257 Query: 252 RWHESALGKDS 262 RWHESALGKDS Sbjct: 258 RWHESALGKDS 268 >ref|ZP_01044460.1| Binding-protein-dependent transport systems inner membrane component [Nitrobacter sp. Nb-311A] gb|EAQ37241.1| Binding-protein-dependent transport systems inner membrane component [Nitrobacter sp. Nb-311A] Length = 279 Score = 357 bits (917), Expect = 8e-97, Method: Compositional matrix adjust. Identities = 204/256 (79%), Positives = 223/256 (87%) Query: 7 IVRFLLPLAVFAAGLVLWEAIVRGYGIQPYVLPSPLLVLKTLVADWPVLSQSLGVTLLTT 66 + R LLPLAV A +++W AIV Y I PYVLP P LV TL+ DWP+L +SL TLLTT Sbjct: 24 VARMLLPLAVLGASILVWHAIVDLYDIPPYVLPGPGLVAVTLLEDWPILWRSLLTTLLTT 83 Query: 67 LEGFVAAAIGGIVLALLFNQSKWLEYSLFPYAVVLQVTPVIAIAPLLLIYLQQQTAVIVC 126 +EGF AAA+GGI LALLFNQSKWLE + PYA+VLQVTPVIAIAPLLLIYL Q TAV+VC Sbjct: 84 VEGFAAAAVGGIGLALLFNQSKWLEQAFLPYAIVLQVTPVIAIAPLLLIYLPQHTAVVVC 143 Query: 127 AWIVAFFPVLSNTTLGLNSVDRNLAGLFQLYGASQLQTLLFLKLPAALPYILGGLRIAGG 186 AWIVAFFPVLSNTTLGLNSVDR L GLFQLYGAS+LQTL +LKLPAALPYI GGLRIAGG Sbjct: 144 AWIVAFFPVLSNTTLGLNSVDRGLVGLFQLYGASRLQTLRYLKLPAALPYIFGGLRIAGG 203 Query: 187 LSLIGAVVAEIAAGSAGAGSGLAFRIAESGYRLNIPRMFAALLLLSLAGIVIYGLLALVS 246 LSLIGAVVAEIAAGSAGAGSGLA+RIAESGYRLNIPRMFAALLLLS+AGIVIY LA S Sbjct: 204 LSLIGAVVAEIAAGSAGAGSGLAYRIAESGYRLNIPRMFAALLLLSVAGIVIYMCLATAS 263 Query: 247 HLLLRRWHESALGKDS 262 HL+LRRWHESA+GK+S Sbjct: 264 HLMLRRWHESAIGKES 279 >ref|NP_766729.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] dbj|BAC45354.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] Length = 272 Score = 357 bits (916), Expect = 9e-97, Method: Compositional matrix adjust. Identities = 216/255 (84%), Positives = 236/255 (92%) Query: 8 VRFLLPLAVFAAGLVLWEAIVRGYGIQPYVLPSPLLVLKTLVADWPVLSQSLGVTLLTTL 67 VRF+LP+ V AAGL+ WE +VR I PYVLP+P ++ TL+ DW VLSQSL TLLTTL Sbjct: 18 VRFVLPVIVLAAGLLAWELVVRIREIPPYVLPAPSVIFLTLIKDWAVLSQSLATTLLTTL 77 Query: 68 EGFVAAAIGGIVLALLFNQSKWLEYSLFPYAVVLQVTPVIAIAPLLLIYLQQQTAVIVCA 127 EGFVAA++GGI LALLFNQSKW+EYSLFPYAVVLQVTPVIAIAPLLLIYL+QQTAV+VCA Sbjct: 78 EGFVAASVGGIALALLFNQSKWVEYSLFPYAVVLQVTPVIAIAPLLLIYLEQQTAVVVCA 137 Query: 128 WIVAFFPVLSNTTLGLNSVDRNLAGLFQLYGASQLQTLLFLKLPAALPYILGGLRIAGGL 187 +IVAFFPVLSNTTLGLNSVDRNLAGLFQLYGAS QTL FLKLPAALPYILGGLRIAGGL Sbjct: 138 FIVAFFPVLSNTTLGLNSVDRNLAGLFQLYGASPPQTLRFLKLPAALPYILGGLRIAGGL 197 Query: 188 SLIGAVVAEIAAGSAGAGSGLAFRIAESGYRLNIPRMFAALLLLSLAGIVIYGLLALVSH 247 SLIGAVVAEIAAG+AGAGSGLA+RIAESGYRLNIPRMFAALLLLSLAGIVIYG+LALVSH Sbjct: 198 SLIGAVVAEIAAGTAGAGSGLAYRIAESGYRLNIPRMFAALLLLSLAGIVIYGVLALVSH 257 Query: 248 LLLRRWHESALGKDS 262 L+LRRWHESALGK++ Sbjct: 258 LVLRRWHESALGKEN 272