BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0024.p         (89 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAA72440.1| nreA [Plasmid pTOM9]                                   102   3e-20
ref|YP_001237581.1| NreA protein [Bradyrhizobium sp. BTAi1] >gi|...   100   7e-20
ref|YP_003167549.1| hypothetical protein CAP2UW1_2330 [Candidatu...    99   2e-19
ref|YP_001924581.1| hypothetical protein Mpop_1883 [Methylobacte...    97   1e-18
ref|YP_002542464.1| hypothetical protein Arad_9934 [Agrobacteriu...    96   2e-18

>gb|AAA72440.1| nreA [Plasmid pTOM9]
          Length = 89

 Score =  102 bits (253), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 49/83 (59%), Positives = 61/83 (73%)

Query: 7  HAAIARRLKRANGHLDTIVEMIEQGRPCAQIAQQLQAVESAIESAKKALIHDHIGHSLEE 66
          HA+I +RLKRA GHL +IV M+E+GRPC  IAQQLQAVESA+  AKKAL+HDHI H LEE
Sbjct: 7  HASIIKRLKRAEGHLRSIVVMMEEGRPCLAIAQQLQAVESAVTQAKKALVHDHIDHCLEE 66

Query: 67 TLKASGPKGRAVLRDFRLVAKYL 89
           ++         LR+F+ + KYL
Sbjct: 67 AVRDGTRPSDETLREFKSITKYL 89


>ref|YP_001237581.1| NreA protein [Bradyrhizobium sp. BTAi1]
 gb|ABQ33675.1| NreA protein [Bradyrhizobium sp. BTAi1]
          Length = 63

 Score =  100 bits (249), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 45/63 (71%), Positives = 53/63 (84%)

Query: 27 MIEQGRPCAQIAQQLQAVESAIESAKKALIHDHIGHSLEETLKASGPKGRAVLRDFRLVA 86
          M+E  RPCA+IAQQLQAVESAIESAKK +IHDHI HSLE + K  G KG+A LRDF+L++
Sbjct: 1  MVENNRPCAEIAQQLQAVESAIESAKKTMIHDHISHSLERSFKTHGQKGQAALRDFKLIS 60

Query: 87 KYL 89
          KYL
Sbjct: 61 KYL 63


>ref|YP_003167549.1| hypothetical protein CAP2UW1_2330 [Candidatus Accumulibacter
          phosphatis clade IIA str. UW-1]
 gb|ACV35620.1| protein of unknown function DUF156 [Candidatus Accumulibacter
          phosphatis clade IIA str. UW-1]
          Length = 89

 Score = 98.6 bits (244), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 48/89 (53%), Positives = 61/89 (68%)

Query: 1  MSDDHPHAAIARRLKRANGHLDTIVEMIEQGRPCAQIAQQLQAVESAIESAKKALIHDHI 60
          MS    H  I +RLKRA GHL +I+ M+EQGR C +IAQQLQAVESA+ SAKKAL+HDHI
Sbjct: 1  MSTHTSHPEIIKRLKRAEGHLRSILNMLEQGRNCLEIAQQLQAVESAVASAKKALVHDHI 60

Query: 61 GHSLEETLKASGPKGRAVLRDFRLVAKYL 89
           H LE  ++         +R+F+ + KYL
Sbjct: 61 DHCLEHAVRDGTRSADDTIREFKAITKYL 89


>ref|YP_001924581.1| hypothetical protein Mpop_1883 [Methylobacterium populi BJ001]
 gb|ACB80046.1| protein of unknown function DUF156 [Methylobacterium populi
          BJ001]
          Length = 91

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/83 (54%), Positives = 59/83 (71%)

Query: 7  HAAIARRLKRANGHLDTIVEMIEQGRPCAQIAQQLQAVESAIESAKKALIHDHIGHSLEE 66
          H  I +RLKRA+GHL  ++ MIE+GRPC  +AQQLQAVESA+ +AK+ALIHDH+ H   E
Sbjct: 9  HTDIVKRLKRAHGHLAGVIAMIEEGRPCLDLAQQLQAVESAVTNAKRALIHDHMEHCFGE 68

Query: 67 TLKASGPKGRAVLRDFRLVAKYL 89
           +   G   R  L +F+ +AKYL
Sbjct: 69 GVDGGGKAAREALAEFKAIAKYL 91


>ref|YP_002542464.1| hypothetical protein Arad_9934 [Agrobacterium radiobacter K84]
 gb|ACM30867.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
          Length = 96

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 46/85 (54%), Positives = 58/85 (68%)

Query: 5  HPHAAIARRLKRANGHLDTIVEMIEQGRPCAQIAQQLQAVESAIESAKKALIHDHIGHSL 64
          H H AIA+RLKRA GHL ++V+MIE GR C  IAQQL AVE AI  AKK LI DH+ H L
Sbjct: 12 HHHEAIAKRLKRAEGHLRSVVQMIENGRDCVDIAQQLSAVEKAITQAKKTLIQDHLDHCL 71

Query: 65 EETLKASGPKGRAVLRDFRLVAKYL 89
          E+ + +   K R  + +F+ + KYL
Sbjct: 72 EDVVSSLSRKERKSIDEFKSITKYL 96