BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0017.p (541 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_766739.1| glutamate synthase [Bradyrhizobium japonicum US... 986 0.0 ref|YP_001243251.1| glutamate synthase domain-containing protein... 955 0.0 ref|YP_575773.1| ferredoxin-dependent glutamate synthase [Nitrob... 955 0.0 ref|YP_001202862.1| glutamate synthase domain-containing protein... 952 0.0 ref|YP_567403.1| ferredoxin-dependent glutamate synthase [Rhodop... 931 0.0 >ref|NP_766739.1| glutamate synthase [Bradyrhizobium japonicum USDA 110] dbj|BAC45364.1| glt [Bradyrhizobium japonicum USDA 110] Length = 541 Score = 986 bits (2549), Expect = 0.0, Method: Compositional matrix adjust. Identities = 461/540 (85%), Positives = 508/540 (94%) Query: 1 MDTMLLPFSPRFIVLTICAVVTALLLLVGIFDHKVFKIVLIPLVIFGALTLLGIRDLTQK 60 M+T+L+PFSPRFIVLTICAVVTALL+ GI D K+F I+LIP++IFGALTLLG+RDL QK Sbjct: 1 METLLMPFSPRFIVLTICAVVTALLIGFGIADRKIFDILLIPILIFGALTLLGVRDLLQK 60 Query: 61 NHAVLRNYPISAHVRFLLEEIRPEMRQYFFESEKDGMPFSRDTRAVVYQRAKMVLDKRPF 120 +HAVLRNYPISAH+RFLLEEIRPEMRQYFFESEKDGMPFSRDTRAVVYQRAKM LDKRPF Sbjct: 61 SHAVLRNYPISAHIRFLLEEIRPEMRQYFFESEKDGMPFSRDTRAVVYQRAKMQLDKRPF 120 Query: 121 GTQEDVYREGYEWMHHSVAPKPRADQKFRITIGGPDCTKPYSASVFNISAMSFGALSPNA 180 GTQEDVYREGYEWMHHSV+PK A++KFR+ +GGPDC KPYSASVFNISAMSFGALSPNA Sbjct: 121 GTQEDVYREGYEWMHHSVSPKAHAEEKFRVVVGGPDCKKPYSASVFNISAMSFGALSPNA 180 Query: 181 VRALNAGAKKGGFAHDTGEGGVSPYHREMGGDIIWEIGSGYFGCRNRDGTFNPDLFASVA 240 VRALNAGAKKGGFAHDTGEGG SPYH EMGGDIIWEIGSGYFGCR+ DG+F+P+ FA VA Sbjct: 181 VRALNAGAKKGGFAHDTGEGGFSPYHAEMGGDIIWEIGSGYFGCRHLDGSFDPEAFARVA 240 Query: 241 GEDQIKMVELKISQGAKPGHGGVLPAAKVSEEISKIRGVPMGEDCISPAYHKAFSTPLQM 300 G+DQIKMVELKISQGAKPGHGGVLPAAKVSEEISKIRGV MGEDCISPA H+AFSTP+ M Sbjct: 241 GQDQIKMVELKISQGAKPGHGGVLPAAKVSEEISKIRGVSMGEDCISPASHRAFSTPVGM 300 Query: 301 MEFVARMRKLSGGKPAGFKMCIGHPWEFLAICKAMHESGLYPDFIVVDGNEGGTGAAPLE 360 M+F+A MR+LSGGKPAGFK+CIGHPWEFLAICKAM E+G+YPDFIVVDGNEGGTGAAPLE Sbjct: 301 MQFIAEMRRLSGGKPAGFKLCIGHPWEFLAICKAMLETGIYPDFIVVDGNEGGTGAAPLE 360 Query: 361 FMDHLGMPMREGVSFVHNALVGIGARDRIKIGASGKVATAFDMARAMAIGADWCNSARGF 420 FMDHLGMPMREGV+FVHNAL+GI ARDRIK+GASGK+ATAFDMARAMAIGADWCNSARGF Sbjct: 361 FMDHLGMPMREGVNFVHNALIGINARDRIKLGASGKIATAFDMARAMAIGADWCNSARGF 420 Query: 421 MFALGCIQSLSCHTDRCPTGVTSQDPIRNRALYVPDKIERVYNYHHSTLHALTELLAAAG 480 MF+LGCIQSLSCHTDRCPTGV +QDP R RALYVP KI+RV+NYHH+TLH+LTEL+AAAG Sbjct: 421 MFSLGCIQSLSCHTDRCPTGVATQDPTRARALYVPLKIDRVHNYHHATLHSLTELIAAAG 480 Query: 481 LEHTKELRPIHFSQRSSTTEVASFAELYPTLRPGELLEGTQDRRFRDAWAMARADSFQPA 540 LEH ++LRPIHFSQR STT+V SFA+LYP LRPGELLEGT+D RFRDAW MARA++FQPA Sbjct: 481 LEHPQQLRPIHFSQRRSTTQVQSFAQLYPALRPGELLEGTEDPRFRDAWRMARAETFQPA 540 >ref|YP_001243251.1| glutamate synthase domain-containing protein [Bradyrhizobium sp. BTAi1] gb|ABQ39345.1| putative glutamate synthase domain 2 [Bradyrhizobium sp. BTAi1] Length = 541 Score = 955 bits (2469), Expect = 0.0, Method: Compositional matrix adjust. Identities = 459/537 (85%), Positives = 503/537 (93%) Query: 1 MDTMLLPFSPRFIVLTICAVVTALLLLVGIFDHKVFKIVLIPLVIFGALTLLGIRDLTQK 60 MDT+LLPFSPR+IVLTICA TALLL++G++D K+ +VLIPL+IFGALTLLG+RDL Q Sbjct: 1 MDTLLLPFSPRYIVLTICASTTALLLILGVYDRKILDLVLIPLLIFGALTLLGVRDLLQS 60 Query: 61 NHAVLRNYPISAHVRFLLEEIRPEMRQYFFESEKDGMPFSRDTRAVVYQRAKMVLDKRPF 120 +HAVLRNYPISAH+RFLLEEIRPEMRQYFFESEKDGMPFSRDTRAVVYQRAKMVLDKRPF Sbjct: 61 SHAVLRNYPISAHLRFLLEEIRPEMRQYFFESEKDGMPFSRDTRAVVYQRAKMVLDKRPF 120 Query: 121 GTQEDVYREGYEWMHHSVAPKPRADQKFRITIGGPDCTKPYSASVFNISAMSFGALSPNA 180 GTQEDVYREGYEWMHHSVAPKPRA++K+RITIGGPDC KPYSASVFNISAMSFGALSPNA Sbjct: 121 GTQEDVYREGYEWMHHSVAPKPRAEEKYRITIGGPDCAKPYSASVFNISAMSFGALSPNA 180 Query: 181 VRALNAGAKKGGFAHDTGEGGVSPYHREMGGDIIWEIGSGYFGCRNRDGTFNPDLFASVA 240 VRALN GAK+GGFAHDTGEGG SPYH EMGGDIIWEIGSGYFGCR+RDG+F+PD FA VA Sbjct: 181 VRALNGGAKRGGFAHDTGEGGFSPYHAEMGGDIIWEIGSGYFGCRHRDGSFDPDAFARVA 240 Query: 241 GEDQIKMVELKISQGAKPGHGGVLPAAKVSEEISKIRGVPMGEDCISPAYHKAFSTPLQM 300 +QIKMVELK+SQGAKPGHGGVLPAAKVSEEISKIRGV MGEDCISP H+AFSTP+ M Sbjct: 241 ATEQIKMVELKVSQGAKPGHGGVLPAAKVSEEISKIRGVAMGEDCISPPAHRAFSTPIGM 300 Query: 301 MEFVARMRKLSGGKPAGFKMCIGHPWEFLAICKAMHESGLYPDFIVVDGNEGGTGAAPLE 360 M+F+ MR+LSGGKPAGFK+CIGHPWEFLAICKAM E+ +YPDFIVVDGNEGGTGAAPLE Sbjct: 301 MQFIGEMRRLSGGKPAGFKLCIGHPWEFLAICKAMLETSIYPDFIVVDGNEGGTGAAPLE 360 Query: 361 FMDHLGMPMREGVSFVHNALVGIGARDRIKIGASGKVATAFDMARAMAIGADWCNSARGF 420 FMDHLGMPMREGV+FVHNAL+G+ RDRIKIGASGKVATAFDMARAM+IGADWCNSARGF Sbjct: 361 FMDHLGMPMREGVNFVHNALIGLNVRDRIKIGASGKVATAFDMARAMSIGADWCNSARGF 420 Query: 421 MFALGCIQSLSCHTDRCPTGVTSQDPIRNRALYVPDKIERVYNYHHSTLHALTELLAAAG 480 MFALGCIQSLSCHTDRCPTGV +QDP R RAL VP K++RVYNYHH+TLHAL ELLAAAG Sbjct: 421 MFALGCIQSLSCHTDRCPTGVATQDPTRARALVVPHKVDRVYNYHHATLHALAELLAAAG 480 Query: 481 LEHTKELRPIHFSQRSSTTEVASFAELYPTLRPGELLEGTQDRRFRDAWAMARADSF 537 LEH ++LRPIHFSQR+STTEVASFA+LYP+LRPGELL+GTQD RFRDAWAMAR D+F Sbjct: 481 LEHPQDLRPIHFSQRTSTTEVASFAKLYPSLRPGELLDGTQDVRFRDAWAMARPDTF 537 >ref|YP_575773.1| ferredoxin-dependent glutamate synthase [Nitrobacter hamburgensis X14] gb|ABE61313.1| ferredoxin-dependent glutamate synthase [Nitrobacter hamburgensis X14] Length = 541 Score = 955 bits (2468), Expect = 0.0, Method: Compositional matrix adjust. Identities = 443/541 (81%), Positives = 495/541 (91%) Query: 1 MDTMLLPFSPRFIVLTICAVVTALLLLVGIFDHKVFKIVLIPLVIFGALTLLGIRDLTQK 60 M+T+LLPFSPRFIVLTICAVVTALL+ +G+ DH+ +V++P++IFGALT LG+RDL QK Sbjct: 1 METLLLPFSPRFIVLTICAVVTALLIGLGVADHETLTVVVVPILIFGALTALGVRDLLQK 60 Query: 61 NHAVLRNYPISAHVRFLLEEIRPEMRQYFFESEKDGMPFSRDTRAVVYQRAKMVLDKRPF 120 +HA+LRNYPISAH+RFLLEEIRPEMRQYFFESEKDGMPFSRDTR+V+YQRAKMVLDKRPF Sbjct: 61 SHAILRNYPISAHIRFLLEEIRPEMRQYFFESEKDGMPFSRDTRSVIYQRAKMVLDKRPF 120 Query: 121 GTQEDVYREGYEWMHHSVAPKPRADQKFRITIGGPDCTKPYSASVFNISAMSFGALSPNA 180 GTQE VY EGYEWMHHS+APKP A++ FRI IGGPDC PYSAS+FNISAMSFGALSPNA Sbjct: 121 GTQEKVYAEGYEWMHHSMAPKPHAEETFRIAIGGPDCKTPYSASIFNISAMSFGALSPNA 180 Query: 181 VRALNAGAKKGGFAHDTGEGGVSPYHREMGGDIIWEIGSGYFGCRNRDGTFNPDLFASVA 240 VRALNAGAK G FAHD+GEGGVSPYHRE GGD+IWEIGSGYFGCRNRDG+FN FA VA Sbjct: 181 VRALNAGAKMGNFAHDSGEGGVSPYHRENGGDLIWEIGSGYFGCRNRDGSFNAREFARVA 240 Query: 241 GEDQIKMVELKISQGAKPGHGGVLPAAKVSEEISKIRGVPMGEDCISPAYHKAFSTPLQM 300 +DQIKMVELKISQGAKPGHGGVLPAAKVSEEIS+IRG+ M EDCISP++HKAFSTP+ M Sbjct: 241 ADDQIKMVELKISQGAKPGHGGVLPAAKVSEEISRIRGISMDEDCISPSHHKAFSTPVGM 300 Query: 301 MEFVARMRKLSGGKPAGFKMCIGHPWEFLAICKAMHESGLYPDFIVVDGNEGGTGAAPLE 360 M F+A MR+LSGGKPAGFK+C+GH WEFLAICKAM ++G+YPDFIVVDGNEGGTGAAPLE Sbjct: 301 MTFIAEMRRLSGGKPAGFKLCVGHKWEFLAICKAMVQTGIYPDFIVVDGNEGGTGAAPLE 360 Query: 361 FMDHLGMPMREGVSFVHNALVGIGARDRIKIGASGKVATAFDMARAMAIGADWCNSARGF 420 FMDHLGMPMREGV+FVHNAL+GI ARDRI+IGASGK+ATAFD+ARAMA+GADWCNSARGF Sbjct: 361 FMDHLGMPMREGVNFVHNALIGIDARDRIRIGASGKIATAFDVARAMALGADWCNSARGF 420 Query: 421 MFALGCIQSLSCHTDRCPTGVTSQDPIRNRALYVPDKIERVYNYHHSTLHALTELLAAAG 480 MFALGCIQSLSCHTDRCPTG+T+QDP RNRAL VP K+ERVYNYH +TL ALTEL+AAAG Sbjct: 421 MFALGCIQSLSCHTDRCPTGITTQDPTRNRALVVPHKLERVYNYHQATLLALTELIAAAG 480 Query: 481 LEHTKELRPIHFSQRSSTTEVASFAELYPTLRPGELLEGTQDRRFRDAWAMARADSFQPA 540 LEH +ELRP+HFSQR S TEVASF LYPTLRPGELL+GT D RFRDAWA A+A SF P Sbjct: 481 LEHPRELRPVHFSQRVSNTEVASFDTLYPTLRPGELLDGTADPRFRDAWAQAQAGSFAPV 540 Query: 541 G 541 G Sbjct: 541 G 541 >ref|YP_001202862.1| glutamate synthase domain-containing protein [Bradyrhizobium sp. ORS 278] emb|CAL74622.1| putative glutamate synthase domain 2 [Bradyrhizobium sp. ORS 278] Length = 561 Score = 952 bits (2460), Expect = 0.0, Method: Compositional matrix adjust. Identities = 458/540 (84%), Positives = 503/540 (93%) Query: 1 MDTMLLPFSPRFIVLTICAVVTALLLLVGIFDHKVFKIVLIPLVIFGALTLLGIRDLTQK 60 MDT+LLPFSPR+IVLTICA TALLL++GI+D K+F +VLIPL++F ALT LG+RDL QK Sbjct: 22 MDTLLLPFSPRYIVLTICATATALLLILGIYDRKIFDLVLIPLLVFAALTALGVRDLLQK 81 Query: 61 NHAVLRNYPISAHVRFLLEEIRPEMRQYFFESEKDGMPFSRDTRAVVYQRAKMVLDKRPF 120 +HAVLRNYPISAH+RF+LEEIRPEMRQYFFESEKDGMPFSRDTRAVVYQRAKMVLDKRPF Sbjct: 82 SHAVLRNYPISAHLRFILEEIRPEMRQYFFESEKDGMPFSRDTRAVVYQRAKMVLDKRPF 141 Query: 121 GTQEDVYREGYEWMHHSVAPKPRADQKFRITIGGPDCTKPYSASVFNISAMSFGALSPNA 180 GTQEDVYREGYEWMHHSV+PKP A++KFRIT+GGP C KPYSASVFNISAMSFGALSPNA Sbjct: 142 GTQEDVYREGYEWMHHSVSPKPHAEEKFRITVGGPGCAKPYSASVFNISAMSFGALSPNA 201 Query: 181 VRALNAGAKKGGFAHDTGEGGVSPYHREMGGDIIWEIGSGYFGCRNRDGTFNPDLFASVA 240 VRALN GAK+GGFAHDTGEGG SPYH EMGGDIIWEIGSGYFGCR+RDGTF+PD FA VA Sbjct: 202 VRALNGGAKRGGFAHDTGEGGFSPYHAEMGGDIIWEIGSGYFGCRHRDGTFDPDAFARVA 261 Query: 241 GEDQIKMVELKISQGAKPGHGGVLPAAKVSEEISKIRGVPMGEDCISPAYHKAFSTPLQM 300 +QIKMVELK+SQGAKPGHGGVLPAAKVSEEISKIRGV MGEDCISP H+AFSTP+ M Sbjct: 262 ATEQIKMVELKVSQGAKPGHGGVLPAAKVSEEISKIRGVAMGEDCISPPAHRAFSTPVGM 321 Query: 301 MEFVARMRKLSGGKPAGFKMCIGHPWEFLAICKAMHESGLYPDFIVVDGNEGGTGAAPLE 360 M+F+ MR+LSGGKPAGFK+CIGHPWEFLAICKAM E+G+YPDFIVVDGNEGGTGAAPLE Sbjct: 322 MQFIGEMRRLSGGKPAGFKLCIGHPWEFLAICKAMLETGIYPDFIVVDGNEGGTGAAPLE 381 Query: 361 FMDHLGMPMREGVSFVHNALVGIGARDRIKIGASGKVATAFDMARAMAIGADWCNSARGF 420 FMDHLGMPMREGV+FVHNALVGI RDR+KIGASGK+ATAFDMARAM+IGADWCNSARGF Sbjct: 382 FMDHLGMPMREGVNFVHNALVGINIRDRVKIGASGKIATAFDMARAMSIGADWCNSARGF 441 Query: 421 MFALGCIQSLSCHTDRCPTGVTSQDPIRNRALYVPDKIERVYNYHHSTLHALTELLAAAG 480 MFALGCIQSLSCHTDRCPTGV +QDP R RAL VP KI+RVYNYHH+TLHAL ELLAAAG Sbjct: 442 MFALGCIQSLSCHTDRCPTGVATQDPTRARALVVPHKIDRVYNYHHATLHALAELLAAAG 501 Query: 481 LEHTKELRPIHFSQRSSTTEVASFAELYPTLRPGELLEGTQDRRFRDAWAMARADSFQPA 540 LEH ++LRPIHFSQR+STTEV+SFA+LYP+LRPGELL+GTQD RFRDAWAMAR D+F A Sbjct: 502 LEHPQDLRPIHFSQRTSTTEVSSFAKLYPSLRPGELLDGTQDVRFRDAWAMARPDTFAAA 561 >ref|YP_567403.1| ferredoxin-dependent glutamate synthase [Rhodopseudomonas palustris BisB5] gb|ABE37502.1| ferredoxin-dependent glutamate synthase [Rhodopseudomonas palustris BisB5] Length = 543 Score = 931 bits (2407), Expect = 0.0, Method: Compositional matrix adjust. Identities = 436/542 (80%), Positives = 492/542 (90%), Gaps = 2/542 (0%) Query: 1 MDTMLLPFSPRFIVLTICAVVTALLLLVGIFDH--KVFKIVLIPLVIFGALTLLGIRDLT 58 M+T+LLPFSPR+I LTICAV+TAL + I D+ +F ++L ++FGALTLLG+RDL Sbjct: 1 METILLPFSPRYIALTICAVLTALFASIAITDYHTSLFGVMLTLALVFGALTLLGVRDLL 60 Query: 59 QKNHAVLRNYPISAHVRFLLEEIRPEMRQYFFESEKDGMPFSRDTRAVVYQRAKMVLDKR 118 QKNHAVLRNYPISAH+RFLLEEIRPEMRQYFFESEKDG PFSRDTRA++YQRAKMVLDKR Sbjct: 61 QKNHAVLRNYPISAHLRFLLEEIRPEMRQYFFESEKDGKPFSRDTRALIYQRAKMVLDKR 120 Query: 119 PFGTQEDVYREGYEWMHHSVAPKPRADQKFRITIGGPDCTKPYSASVFNISAMSFGALSP 178 PFGTQEDVY +GYEWMHHSVAP+P A+++FRITIGGPDC KPYSASVFNISAMSFGALSP Sbjct: 121 PFGTQEDVYGDGYEWMHHSVAPRPHAEERFRITIGGPDCAKPYSASVFNISAMSFGALSP 180 Query: 179 NAVRALNAGAKKGGFAHDTGEGGVSPYHREMGGDIIWEIGSGYFGCRNRDGTFNPDLFAS 238 NAVRALNAGAKKGGFAHDTGEGGVSPYHRE GGD+IWEIGSGYFGCR RDG F+PD FA Sbjct: 181 NAVRALNAGAKKGGFAHDTGEGGVSPYHREHGGDLIWEIGSGYFGCRTRDGQFDPDAFAR 240 Query: 239 VAGEDQIKMVELKISQGAKPGHGGVLPAAKVSEEISKIRGVPMGEDCISPAYHKAFSTPL 298 +A +DQIKMVELK+SQGAKPGHGGVLPAAKVSEEIS+IRGV M EDCISP +HKAFSTP+ Sbjct: 241 LATDDQIKMVELKVSQGAKPGHGGVLPAAKVSEEISRIRGVAMDEDCISPPFHKAFSTPV 300 Query: 299 QMMEFVARMRKLSGGKPAGFKMCIGHPWEFLAICKAMHESGLYPDFIVVDGNEGGTGAAP 358 +M+ F+A MR+LSGGKP GFK+CIGHPWEFLAICKAM +G+ PDFIVVDGNEGGTGAAP Sbjct: 301 EMLRFIAEMRRLSGGKPTGFKLCIGHPWEFLAICKAMLATGITPDFIVVDGNEGGTGAAP 360 Query: 359 LEFMDHLGMPMREGVSFVHNALVGIGARDRIKIGASGKVATAFDMARAMAIGADWCNSAR 418 LEFMDHLGMPMREGV+FVHNAL+GIG RDRIKIGA+GKVATAFDMARAMA+GADWCNSAR Sbjct: 361 LEFMDHLGMPMREGVNFVHNALIGIGMRDRIKIGAAGKVATAFDMARAMALGADWCNSAR 420 Query: 419 GFMFALGCIQSLSCHTDRCPTGVTSQDPIRNRALYVPDKIERVYNYHHSTLHALTELLAA 478 GFMFALGCIQSLSCHTDRCPTGVT+Q+P R RAL V KI+RV+NYHH+TLHAL EL+AA Sbjct: 421 GFMFALGCIQSLSCHTDRCPTGVTTQEPSRYRALVVTQKIDRVFNYHHATLHALAELVAA 480 Query: 479 AGLEHTKELRPIHFSQRSSTTEVASFAELYPTLRPGELLEGTQDRRFRDAWAMARADSFQ 538 AGL+H +E+ P HFSQR+S++ V SFA+LYPTLRPGELL+GT D RF+ AWAMARA++F Sbjct: 481 AGLDHPQEIGPHHFSQRTSSSVVVSFAQLYPTLRPGELLDGTDDPRFKQAWAMARAETFA 540 Query: 539 PA 540 A Sbjct: 541 AA 542