BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0011.p         (118 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_773982.1| two-component response regulator [Bradyrhizobiu...   105   3e-21
ref|YP_001242561.1| putative two-component response regulator [B...   103   8e-21
ref|YP_001203499.1| putative two-component response regulator [B...   100   5e-20
ref|YP_001641223.1| response regulator receiver [Methylobacteriu...    70   8e-11
ref|ZP_00051453.1| COG0784: FOG: CheY-like receiver [Magnetospir...    70   9e-11

>ref|NP_773982.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 dbj|BAC52607.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 124

 Score =  105 bits (261), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/117 (47%), Positives = 80/117 (68%), Gaps = 2/117 (1%)

Query: 1   MAYARPVRQIAIVVEDDMIQRDMIALLLQEGHFDVIQCEDAETAALAIKMRHPSL--VVT 58
           M  +RP    A+VVEDD +QR+M++LLL+E  + VIQCE AE A   ++    +L  +VT
Sbjct: 1   MGQSRPFPATALVVEDDPMQREMLSLLLEESGYQVIQCESAEAAERVLEKSAGALCLMVT 60

Query: 59  DIKLSGKMDGVELARLAVDCDPGVRVMVISGRPPDSALPEGVKFFEKPVYPPMLLRE 115
           D++L+G+M+GVELA +A   +P + V+V SGRP +  LP+G KF+ KP  P  +LRE
Sbjct: 61  DVQLAGRMNGVELAHVAKGRNPKLDVVVTSGRPLNQPLPDGAKFWAKPWAPLDVLRE 117


>ref|YP_001242561.1| putative two-component response regulator [Bradyrhizobium sp.
           BTAi1]
 gb|ABQ38655.1| putative two-component response regulator [Bradyrhizobium sp.
           BTAi1]
          Length = 134

 Score =  103 bits (257), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 55/117 (47%), Positives = 73/117 (62%), Gaps = 2/117 (1%)

Query: 1   MAYARPVRQIAIVVEDDMIQRDMIALLLQEGHFDVIQCEDAETAALAIKM--RHPSLVVT 58
           M  ++P R   ++VEDD  QR+MIALLL+E  +DVI CE AE A L +        L++T
Sbjct: 1   MGQSQPFRATVLIVEDDPTQREMIALLLEESDYDVIACESAEAAELVLNKPGHRIVLMMT 60

Query: 59  DIKLSGKMDGVELARLAVDCDPGVRVMVISGRPPDSALPEGVKFFEKPVYPPMLLRE 115
           D+ L+G+M GVELA +A    P + V+V SGRP    LP G KF+ KP  P  +LRE
Sbjct: 61  DVNLAGRMSGVELAHIARARHPHINVVVTSGRPLSQPLPGGTKFWSKPWAPLDVLRE 117


>ref|YP_001203499.1| putative two-component response regulator [Bradyrhizobium sp. ORS
           278]
 emb|CAL75262.1| putative two-component response regulator [Bradyrhizobium sp. ORS
           278]
          Length = 134

 Score =  100 bits (250), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 53/117 (45%), Positives = 73/117 (62%), Gaps = 2/117 (1%)

Query: 1   MAYARPVRQIAIVVEDDMIQRDMIALLLQEGHFDVIQCEDAETAALAIKM--RHPSLVVT 58
           M  ++P R  A++VEDD  QR+MI+LLL+E  +DVI CE AE A L +        L++T
Sbjct: 1   MGQSQPFRATALIVEDDPTQREMISLLLEESEYDVIACESAEAAELVLNRPGNRVVLLMT 60

Query: 59  DIKLSGKMDGVELARLAVDCDPGVRVMVISGRPPDSALPEGVKFFEKPVYPPMLLRE 115
           D+ L+G+M GVELA +A    P + ++V SGRP    LP   KF+ KP  P  +LRE
Sbjct: 61  DVNLAGRMSGVELAHIARARHPHINIVVTSGRPLSQPLPGDAKFWAKPWAPLDVLRE 117


>ref|YP_001641223.1| response regulator receiver [Methylobacterium extorquens PA1]
 ref|YP_002422800.1| response regulator receiver protein [Methylobacterium
           chloromethanicum CM4]
 ref|YP_003070184.1| response regulator [Methylobacterium extorquens DM4]
 gb|ABY32152.1| response regulator receiver [Methylobacterium extorquens PA1]
 gb|ACK84872.1| response regulator receiver protein [Methylobacterium
           chloromethanicum CM4]
 emb|CAX26363.1| Putative response regulator; (CheY-like protein) [Methylobacterium
           extorquens DM4]
          Length = 129

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 45/111 (40%), Positives = 64/111 (57%), Gaps = 6/111 (5%)

Query: 10  IAIVVEDDMIQRDMIALLLQEGHFDVIQCEDAETAALAIKMRHP---SLVVTDIKLSGKM 66
           +A+VVE+D   RD+  +L++E   DVI C  AE A LA+  R     ++V+ D +LSGKM
Sbjct: 9   VALVVEEDEAARDLATVLIEETDLDVIACSSAEDA-LAVLERGDVTVAMVIADTRLSGKM 67

Query: 67  DGVELARLAVDCDPGVRVMVISGRPPD--SALPEGVKFFEKPVYPPMLLRE 115
           DG  LAR   D  P VR++V SG   +  + +P    +  KP  P  LLR+
Sbjct: 68  DGAALARAVEDRWPEVRLVVTSGAREERRTEIPPHAVYMRKPWLPLELLRQ 118


>ref|ZP_00051453.1| COG0784: FOG: CheY-like receiver [Magnetospirillum magnetotacticum
           MS-1]
          Length = 130

 Score = 70.5 bits (171), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 51/120 (42%), Positives = 66/120 (55%), Gaps = 6/120 (5%)

Query: 1   MAYARPVRQIAIVVEDDMIQRDMIALLLQEGHFDVIQCEDAETAALAIKMRHP---SLVV 57
           MA+      +A+VVE+D   RD+  +L++E   DVI C  AE  ALA+  R     ++VV
Sbjct: 1   MAHTGTDSPVALVVEEDEAARDLATVLIEETDLDVIACSSAED-ALAVLERGDVTVAMVV 59

Query: 58  TDIKLSGKMDGVELARLAVDCDPGVRVMVIS-GRPPDSA-LPEGVKFFEKPVYPPMLLRE 115
            D  LSGKMDG  LAR   D  P VR++V S  R   SA LP    +  KP  P  LLR+
Sbjct: 60  ADTHLSGKMDGAALARTVEDRWPDVRLVVTSEAREERSAGLPPHAVYMRKPWLPLELLRQ 119