BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0010.p         (193 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_061742.1| F0F1 ATP synthase subunit beta [Leifsonia xyli ...    39   0.31 
gb|EFW23245.1| polyketide synthase [Coccidioides posadasii str. ...    37   1.8  
ref|YP_001221910.1| F0F1 ATP synthase subunit beta [Clavibacter ...    36   2.3  
ref|XP_001243185.1| hypothetical protein CIMG_07081 [Coccidioide...    34   8.6  
emb|CBJ26175.1| conserved unknown protein [Ectocarpus siliculosus]     34   9.5  

>ref|YP_061742.1| F0F1 ATP synthase subunit beta [Leifsonia xyli subsp. xyli str.
           CTCB07]
 sp|Q6AG58.1|ATPB_LEIXX RecName: Full=ATP synthase subunit beta; AltName: Full=ATP synthase
           F1 sector subunit beta; AltName: Full=F-ATPase subunit
           beta
 gb|AAT88637.1| ATP synthase, beta chain [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 487

 Score = 39.3 bits (90), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 75  SSLQRLMSFGDKSIDLLLQLCFHFGNDVVRQASAKPIGRLVPHPGLLGDRGSLKRLILDP 134
           ++L+  ++ GD+S ++ L++  H G+D+VR  S KP   LV   G + D GSL  + +  
Sbjct: 43  NALKTTITIGDRSTEITLEVAQHLGDDLVRAISLKPTDGLV-RGGEVRDTGSLITVPVGD 101

Query: 135 SSRGRM 140
            ++G++
Sbjct: 102 VTKGKV 107


>gb|EFW23245.1| polyketide synthase [Coccidioides posadasii str. Silveira]
          Length = 2611

 Score = 36.6 bits (83), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 52/112 (46%), Gaps = 12/112 (10%)

Query: 52  ECPRAAISGASSAGK--------IRLLKSANSSLQRLMSFGDKSIDLLLQLCFHFGNDVV 103
           E  R  I+G SS+ K          L + +N SL+R + F  +S+D LLQ    F    +
Sbjct: 842 EAFRKFIAGQSSSTKGLSLSNISFNLARQSNRSLERSLMFSVRSVDELLQKLEMFEKGDM 901

Query: 104 RQASAKPIGRLVPHPGLLGDRGSLKRLI-LDPSSRGRMACRASRHVSAVGLA 154
             ASA   G+  P P +L   G +   I LDP+   R+A    +H+  V  A
Sbjct: 902 SVASAATTGQ--PRPVVLCFGGQVSTFIGLDPNVYKRVAI-LQKHLDTVDAA 950


>ref|YP_001221910.1| F0F1 ATP synthase subunit beta [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 sp|A5CQ60.1|ATPB_CLAM3 RecName: Full=ATP synthase subunit beta; AltName: Full=ATP synthase
           F1 sector subunit beta; AltName: Full=F-ATPase subunit
           beta
 emb|CAN01213.1| ATP synthase beta chain [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 486

 Score = 36.2 bits (82), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 27/41 (65%)

Query: 75  SSLQRLMSFGDKSIDLLLQLCFHFGNDVVRQASAKPIGRLV 115
           ++L+  ++ G++S ++ L++  H G+DVVR  + KP   LV
Sbjct: 42  NALKTTITIGEESTEITLEIALHLGDDVVRAIALKPTDGLV 82


>ref|XP_001243185.1| hypothetical protein CIMG_07081 [Coccidioides immitis RS]
          Length = 2579

 Score = 34.3 bits (77), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 12/112 (10%)

Query: 52  ECPRAAISGASSAGK--------IRLLKSANSSLQRLMSFGDKSIDLLLQLCFHFGNDVV 103
           E  R  I+G SS+ K          L + +N SL+R + F  +S+D LLQ    F    +
Sbjct: 842 EAFRKFIAGQSSSTKGLSLSNISFNLARQSNRSLERSLMFSVRSVDELLQKLEMFEKGDM 901

Query: 104 RQASAKPIGRLVPHPGLLGDRGSLKRLI-LDPSSRGRMACRASRHVSAVGLA 154
             ASA    +  P P +L   G +   I LDP+   R+A    +H+  V  A
Sbjct: 902 SVASAATTAQ--PRPVVLCFGGQVSTFIGLDPNVYKRVAI-LQKHLDTVDAA 950


>emb|CBJ26175.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 2289

 Score = 34.3 bits (77), Expect = 9.5,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 28/50 (56%)

Query: 35   RSNRSHQGSVDPAGSSFECPRAAISGASSAGKIRLLKSANSSLQRLMSFG 84
            +++R H+ S   AG  + C RA + G  +AGK   +   ++ LQ+L  +G
Sbjct: 2100 KAHRVHRSSAGHAGPVYCCARAGVKGYLTAGKDGFIMLWDAELQKLKQYG 2149