BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0004.p (425 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773366.1| AcrB/AcrD/AcrF family protein [Bradyrhizobium j... 460 e-127 ref|ZP_08628962.1| RND efflux system protein [Bradyrhizobiaceae ... 444 e-122 ref|YP_001207661.1| AcrB family metabolite exporter [Bradyrhizob... 413 e-113 ref|YP_003756233.1| hydrophobe/amphiphile efflux-1 (HAE1) family... 365 6e-99 ref|YP_004675461.1| Efflux pump membrane transporter BepG [Hypho... 358 9e-97 >ref|NP_773366.1| AcrB/AcrD/AcrF family protein [Bradyrhizobium japonicum USDA 110] dbj|BAC51991.1| AcrB/AcrD/AcrF family protein [Bradyrhizobium japonicum USDA 110] Length = 1052 Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust. Identities = 215/264 (81%), Positives = 245/264 (92%) Query: 1 LRSLVYGLNDKLAVIPEARILVIPPPPIQGIGNAAGFAMQVELRDGNADYGKLQAVTGAI 60 LRSLVYGLNDKLAVI EAR +V+PPPPIQGIGNAAGF+MQVELRDGN+D+ KLQA+TGA+ Sbjct: 643 LRSLVYGLNDKLAVIMEARTIVLPPPPIQGIGNAAGFSMQVELRDGNSDFAKLQAITGAV 702 Query: 61 VANAQTQSALQRVQSSFRSMVPQFDVDVDRIKTQTLHVTPDQIFAALSTYLGASYVNQFT 120 V+N Q+QSALQRVQSSFRS VPQF+V++DR+KTQTLHVT DQ+F+ALSTYLG+S+VNQF Sbjct: 703 VSNGQSQSALQRVQSSFRSSVPQFNVEIDRVKTQTLHVTTDQVFSALSTYLGSSFVNQFN 762 Query: 121 KFGRTFQVYTQADAQYRLSLRDIENMMVRNSNGDMIPLGTVARITPSIGPSLISLYNLYP 180 KFGR FQVYTQAD +R++ RDI NMMVRNSNGDMIP+GTVA ITP+ GPSLISLYNLYP Sbjct: 763 KFGRVFQVYTQADPAFRVTERDIANMMVRNSNGDMIPIGTVATITPATGPSLISLYNLYP 822 Query: 181 SASIIGLPAQGYSSGQSMALMEEIAAKTLPPGSGFEWTAMSYQEKEVGSQIYYVFALALL 240 S++IIGLPAQGYSSGQS+ LMEEIA KTLPPG+G+EWTAMSYQEK V +QIY+VF LA+L Sbjct: 823 SSTIIGLPAQGYSSGQSLKLMEEIADKTLPPGTGYEWTAMSYQEKAVSNQIYWVFGLAML 882 Query: 241 LVYLVLAGQYESWYAPISVILAVP 264 LVYLVLAGQYESWYAPISVILAVP Sbjct: 883 LVYLVLAGQYESWYAPISVILAVP 906 >ref|ZP_08628962.1| RND efflux system protein [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08321.1| RND efflux system protein [Bradyrhizobiaceae bacterium SG-6C] Length = 1053 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 221/264 (83%), Positives = 243/264 (92%) Query: 1 LRSLVYGLNDKLAVIPEARILVIPPPPIQGIGNAAGFAMQVELRDGNADYGKLQAVTGAI 60 LRSLV+GLN KL IPEARILVIPPPPIQGIGNAAGFAMQ+ELRDGN+D+GKLQAV AI Sbjct: 642 LRSLVFGLNKKLDTIPEARILVIPPPPIQGIGNAAGFAMQIELRDGNSDFGKLQAVAQAI 701 Query: 61 VANAQTQSALQRVQSSFRSMVPQFDVDVDRIKTQTLHVTPDQIFAALSTYLGASYVNQFT 120 VANAQTQSALQRV S FRSMVPQFD++VDRIKTQTLHVT DQ+F+ LS+YLGASYVNQF Sbjct: 702 VANAQTQSALQRVSSPFRSMVPQFDIEVDRIKTQTLHVTTDQVFSTLSSYLGASYVNQFN 761 Query: 121 KFGRTFQVYTQADAQYRLSLRDIENMMVRNSNGDMIPLGTVARITPSIGPSLISLYNLYP 180 KFGRTFQVY QAD+Q+RL+ +DIEN+ VRN G MIPLGT+A ITP++GPSLISLYNLYP Sbjct: 762 KFGRTFQVYAQADSQFRLTTKDIENLTVRNQQGAMIPLGTIATITPTVGPSLISLYNLYP 821 Query: 181 SASIIGLPAQGYSSGQSMALMEEIAAKTLPPGSGFEWTAMSYQEKEVGSQIYYVFALALL 240 SA++IGLPAQGYSSGQSMALME IA KTLPPG+G+EWTAMSYQEK VGSQIYYVF LALL Sbjct: 822 SATVIGLPAQGYSSGQSMALMESIADKTLPPGTGYEWTAMSYQEKAVGSQIYYVFGLALL 881 Query: 241 LVYLVLAGQYESWYAPISVILAVP 264 LVYLVLAGQYESWYAPI+VILAVP Sbjct: 882 LVYLVLAGQYESWYAPIAVILAVP 905 >ref|YP_001207661.1| AcrB family metabolite exporter [Bradyrhizobium sp. ORS 278] emb|CAL79444.1| putative multidrug efflux transporter (AcrB family); putative acriflavin resistance protein [Bradyrhizobium sp. ORS 278] Length = 849 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 206/264 (78%), Positives = 238/264 (90%) Query: 1 LRSLVYGLNDKLAVIPEARILVIPPPPIQGIGNAAGFAMQVELRDGNADYGKLQAVTGAI 60 LRSLVYGLN +LA + EAR LV+PPPPIQGIGNAAGFAMQVELRDGN+DY KLQA+T AI Sbjct: 331 LRSLVYGLNHRLAEVIEARSLVLPPPPIQGIGNAAGFAMQVELRDGNSDYAKLQAMTSAI 390 Query: 61 VANAQTQSALQRVQSSFRSMVPQFDVDVDRIKTQTLHVTPDQIFAALSTYLGASYVNQFT 120 VA+AQ+QS LQRVQS FR+MVPQFDV++DR+KTQTLHVT DQ+F+ALS+YLGASYVNQF Sbjct: 391 VASAQSQSTLQRVQSPFRAMVPQFDVEIDRVKTQTLHVTTDQVFSALSSYLGASYVNQFN 450 Query: 121 KFGRTFQVYTQADAQYRLSLRDIENMMVRNSNGDMIPLGTVARITPSIGPSLISLYNLYP 180 KFGR FQVY QAD+ RL+ R IE++MVRN +GDMIPLGTVA + P++GPSLISLYNLYP Sbjct: 451 KFGRVFQVYVQADSTARLTPRQIESLMVRNQSGDMIPLGTVATVKPAVGPSLISLYNLYP 510 Query: 181 SASIIGLPAQGYSSGQSMALMEEIAAKTLPPGSGFEWTAMSYQEKEVGSQIYYVFALALL 240 SA+++GLPAQGYSSGQS+ LME+IA +TLPPG+G+EWTAMSYQEK V +QIY F LALL Sbjct: 511 SATVVGLPAQGYSSGQSLKLMEQIAQQTLPPGAGYEWTAMSYQEKAVSNQIYLTFGLALL 570 Query: 241 LVYLVLAGQYESWYAPISVILAVP 264 LVYLVLAGQYESWYAP+SVILAVP Sbjct: 571 LVYLVLAGQYESWYAPVSVILAVP 594 >ref|YP_003756233.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter [Hyphomicrobium denitrificans ATCC 51888] gb|ADJ23912.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Hyphomicrobium denitrificans ATCC 51888] Length = 1051 Score = 365 bits (938), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 168/264 (63%), Positives = 211/264 (79%) Query: 1 LRSLVYGLNDKLAVIPEARILVIPPPPIQGIGNAAGFAMQVELRDGNADYGKLQAVTGAI 60 L SL GLN K++ + + ++V+PPPPIQGIGNA GF MQ+ELRDG+ D GKL+ T A+ Sbjct: 642 LLSLYTGLNAKMSAVTDGSVMVLPPPPIQGIGNAGGFTMQIELRDGSFDLGKLENSTNAV 701 Query: 61 VANAQTQSALQRVQSSFRSMVPQFDVDVDRIKTQTLHVTPDQIFAALSTYLGASYVNQFT 120 V A TQSA+QR + FR+ PQ+ V +DR K QTL +T DQ+F L+TYLG+SYV+QF Sbjct: 702 VQAASTQSAIQRASTPFRASAPQYKVTIDREKVQTLLLTTDQVFQTLATYLGSSYVDQFN 761 Query: 121 KFGRTFQVYTQADAQYRLSLRDIENMMVRNSNGDMIPLGTVARITPSIGPSLISLYNLYP 180 KFGR FQ+Y Q DA +R++ ++ N+ VRN NGDM+PLGTV ITP +GPSLISLYNLYP Sbjct: 762 KFGRVFQIYVQGDAGFRMTPDEVLNLKVRNQNGDMVPLGTVLTITPIVGPSLISLYNLYP 821 Query: 181 SASIIGLPAQGYSSGQSMALMEEIAAKTLPPGSGFEWTAMSYQEKEVGSQIYYVFALALL 240 SASI+G+PA+G+SSG +M LM++IAAKTLPPG G WTA+S+QEK VG QIYYVFALA+L Sbjct: 822 SASIVGVPAKGFSSGDTMQLMDDIAAKTLPPGVGSSWTALSFQEKLVGGQIYYVFALAML 881 Query: 241 LVYLVLAGQYESWYAPISVILAVP 264 LVYLVLAGQYESWY P++V+ AVP Sbjct: 882 LVYLVLAGQYESWYTPLAVLFAVP 905 >ref|YP_004675461.1| Efflux pump membrane transporter BepG [Hyphomicrobium sp. MC1] emb|CCB64889.1| Efflux pump membrane transporter BepG [Hyphomicrobium sp. MC1] Length = 1052 Score = 358 bits (919), Expect = 9e-97, Method: Compositional matrix adjust. Identities = 166/264 (62%), Positives = 208/264 (78%) Query: 1 LRSLVYGLNDKLAVIPEARILVIPPPPIQGIGNAAGFAMQVELRDGNADYGKLQAVTGAI 60 L SL LN ++A I + ++V+PPPPIQGIGNA GF MQ+ELRD + D KL + A+ Sbjct: 642 LASLYKKLNGEMAAIEDGVVMVLPPPPIQGIGNAGGFTMQIELRDSSFDLVKLGSAVDAV 701 Query: 61 VANAQTQSALQRVQSSFRSMVPQFDVDVDRIKTQTLHVTPDQIFAALSTYLGASYVNQFT 120 V A TQS +QR ++FR+ PQ+ V +DR K QTL +T DQ+F L++YLG+SYV+QF Sbjct: 702 VNAANTQSGIQRASTTFRATAPQYKVTIDRAKIQTLLLTTDQVFQTLASYLGSSYVDQFN 761 Query: 121 KFGRTFQVYTQADAQYRLSLRDIENMMVRNSNGDMIPLGTVARITPSIGPSLISLYNLYP 180 KFGR FQ+Y QADA YR+ +I + VRN NGDMIPLGTV ITP +GPSLISLYNLYP Sbjct: 762 KFGRIFQIYVQADADYRMEPSEILRLKVRNQNGDMIPLGTVMNITPIVGPSLISLYNLYP 821 Query: 181 SASIIGLPAQGYSSGQSMALMEEIAAKTLPPGSGFEWTAMSYQEKEVGSQIYYVFALALL 240 SA+I+G+PA+G+SSG +M+LME++A KTLPPG G+ WTA+SYQEK VG QIYYVFALA+L Sbjct: 822 SATIVGVPAKGFSSGDAMSLMEQVAEKTLPPGVGYSWTALSYQEKIVGGQIYYVFALAML 881 Query: 241 LVYLVLAGQYESWYAPISVILAVP 264 LVYLVLAGQYESWY+P+SV+ AVP Sbjct: 882 LVYLVLAGQYESWYSPLSVLFAVP 905