BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0001.p (291 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08628963.1| putative multidrug resistance protein [Bradyr... 357 1e-96 ref|NP_773365.1| multidrag resistance protein [Bradyrhizobium ja... 345 7e-93 ref|YP_003756234.1| RND family efflux transporter MFP subunit [H... 267 1e-69 ref|YP_004675460.1| RND family efflux transporter MFP subunit [H... 258 7e-67 ref|YP_002977590.1| efflux transporter, RND family, MFP subunit ... 230 2e-58 >ref|ZP_08628963.1| putative multidrug resistance protein [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08322.1| putative multidrug resistance protein [Bradyrhizobiaceae bacterium SG-6C] Length = 378 Score = 357 bits (916), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 185/240 (77%), Positives = 213/240 (88%), Gaps = 3/240 (1%) Query: 51 AFVVSAFVSLSACEQNSFVAPPPPKVEVAPPVQRAITRYLDATGNTAPIQTVDLVARVQG 110 AFV V+L+AC+QN+FV PPP KV+V PVQR +TRYL ATGNTAPI+TVDLVARVQG Sbjct: 8 AFV---LVTLTACDQNTFVPPPPAKVDVGKPVQRTVTRYLTATGNTAPIKTVDLVARVQG 64 Query: 111 FLQAINYQDGSFVKEGTTLFTIEPETYKLKLEQAQAAEVGAQATLKQAELDFKRQTDLVQ 170 LQ+INY+DG+FVK+GTTLFT+EPETYKLKLEQAQAAE GAQ+T+KQAE DFKRQ+DLV Sbjct: 65 VLQSINYEDGAFVKQGTTLFTVEPETYKLKLEQAQAAEAGAQSTVKQAEADFKRQSDLVT 124 Query: 171 RQAVSQATLDTSTSTRDNAQASLQQAQVNTRIAAVNYGYTNVAAPFDGIVSNHLVSVGEL 230 RQ VSQATLD STS+RDNAQA+LQQAQVNT+IAAVNYGYTNV APFDGIVS HLVSVGEL Sbjct: 125 RQVVSQATLDQSTSSRDNAQANLQQAQVNTKIAAVNYGYTNVIAPFDGIVSAHLVSVGEL 184 Query: 231 VGVASPTQLATIVQLDPIYVNFNVNEQDVQRVRDEARRRGLTVNELRQLPVEVGLQTETG 290 VGV+SPTQLATIVQ PIYVNF+VNEQDV R+R A ++GLT +L++ P+EVGLQTE+G Sbjct: 185 VGVSSPTQLATIVQFSPIYVNFSVNEQDVLRIRAAAAKKGLTSKDLKETPIEVGLQTESG 244 >ref|NP_773365.1| multidrag resistance protein [Bradyrhizobium japonicum USDA 110] dbj|BAC51990.1| blr6725 [Bradyrhizobium japonicum USDA 110] Length = 419 Score = 345 bits (884), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 178/230 (77%), Positives = 206/230 (89%), Gaps = 1/230 (0%) Query: 62 ACE-QNSFVAPPPPKVEVAPPVQRAITRYLDATGNTAPIQTVDLVARVQGFLQAINYQDG 120 CE +N++VAPPPPKV+VA PVQR +TRY++ATGNTAPI+ VDLVARVQGFLQ+I+YQDG Sbjct: 56 GCEDKNAYVAPPPPKVDVATPVQRPVTRYVEATGNTAPIKNVDLVARVQGFLQSIDYQDG 115 Query: 121 SFVKEGTTLFTIEPETYKLKLEQAQAAEVGAQATLKQAELDFKRQTDLVQRQAVSQATLD 180 +FVK+GT LFTIEPETYKLKLEQAQAAE GAQA+L+QAE DFKRQ+DLVQRQAVSQATLD Sbjct: 116 TFVKQGTQLFTIEPETYKLKLEQAQAAEAGAQASLRQAEADFKRQSDLVQRQAVSQATLD 175 Query: 181 TSTSTRDNAQASLQQAQVNTRIAAVNYGYTNVAAPFDGIVSNHLVSVGELVGVASPTQLA 240 TSTST +NAQA+L QAQ NTRIA VNYGYT V APFDG+VS H+VS+GELVGV+SPTQLA Sbjct: 176 TSTSTHENAQANLLQAQANTRIAEVNYGYTKVTAPFDGVVSAHMVSIGELVGVSSPTQLA 235 Query: 241 TIVQLDPIYVNFNVNEQDVQRVRDEARRRGLTVNELRQLPVEVGLQTETG 290 TIV +DPI+VNF VNEQDV R+R EA RRGLT +L+Q P++VGLQ ETG Sbjct: 236 TIVAMDPIWVNFTVNEQDVLRIRAEAARRGLTPTDLKQFPIQVGLQNETG 285 >ref|YP_003756234.1| RND family efflux transporter MFP subunit [Hyphomicrobium denitrificans ATCC 51888] gb|ADJ23913.1| efflux transporter, RND family, MFP subunit [Hyphomicrobium denitrificans ATCC 51888] Length = 408 Score = 267 bits (683), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 139/270 (51%), Positives = 186/270 (68%), Gaps = 7/270 (2%) Query: 27 HARASAHFG---RSSFVRLRNAPLARI--AFVVSAFVSLSAC-EQNSFVAPPPPKVEVAP 80 RASA G +S+ RL P+ I A + ++L+AC E+N+FV PPPPK+EVA Sbjct: 6 ETRASADAGVQQKSAVARLFR-PMTGIPAACALVGVLTLAACGEKNAFVPPPPPKIEVAQ 64 Query: 81 PVQRAITRYLDATGNTAPIQTVDLVARVQGFLQAINYQDGSFVKEGTTLFTIEPETYKLK 140 P+++ +TRYL+ATGNTA + T LVARVQGF+QAI Y DG VK G LF IE + Y+L Sbjct: 65 PLKKTVTRYLEATGNTAAVNTTTLVARVQGFIQAIKYNDGDLVKAGDVLFVIEQKPYQLS 124 Query: 141 LEQAQAAEVGAQATLKQAELDFKRQTDLVQRQAVSQATLDTSTSTRDNAQASLQQAQVNT 200 LEQA+A + AQA K+AE D+ RQ DL + SQATLD +T+++D A A Q++V+ Sbjct: 125 LEQAEAGQASAQADTKKAEADYARQVDLAAKNIASQATLDQATASKDAAIAKQTQSEVDI 184 Query: 201 RIAAVNYGYTNVAAPFDGIVSNHLVSVGELVGVASPTQLATIVQLDPIYVNFNVNEQDVQ 260 A +N YT V APFDGIV+ VS+G+LVG PT LATIVQL+PIYVNF ++E DVQ Sbjct: 185 EQAKLNLSYTEVKAPFDGIVTAREVSLGQLVGAGGPTTLATIVQLNPIYVNFAISETDVQ 244 Query: 261 RVRDEARRRGLTVNELRQLPVEVGLQTETG 290 +R R +GLT +++++P+EVGLQ+E G Sbjct: 245 DIRSSMRAQGLTREDMKKIPIEVGLQSEQG 274 >ref|YP_004675460.1| RND family efflux transporter MFP subunit [Hyphomicrobium sp. MC1] emb|CCB64888.1| Efflux transporter, RND family, MFP subunit [Hyphomicrobium sp. MC1] Length = 411 Score = 258 bits (659), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 135/240 (56%), Positives = 178/240 (74%), Gaps = 1/240 (0%) Query: 52 FVVSAFVSLSAC-EQNSFVAPPPPKVEVAPPVQRAITRYLDATGNTAPIQTVDLVARVQG 110 V+A ++LS C ++N+F+ PPPPK+E+A P+++++TRYL ATGNTA + T LVARVQG Sbjct: 35 LAVAATLALSGCGDRNTFIPPPPPKIELASPLKQSVTRYLMATGNTAAVNTTTLVARVQG 94 Query: 111 FLQAINYQDGSFVKEGTTLFTIEPETYKLKLEQAQAAEVGAQATLKQAELDFKRQTDLVQ 170 F+Q+I+Y DG FVK G TLF IE + Y+L LEQAQA A+A K+++ D++RQ DL Sbjct: 95 FIQSIDYNDGDFVKAGKTLFVIEQQPYQLSLEQAQAGLASAEAQTKKSKADYERQVDLAA 154 Query: 171 RQAVSQATLDTSTSTRDNAQASLQQAQVNTRIAAVNYGYTNVAAPFDGIVSNHLVSVGEL 230 + SQATLD +T+T D A A+ +Q+QVN A +N YT V APFDGIV+ VS+G+L Sbjct: 155 KNISSQATLDAATATYDAAVAAQKQSQVNIDQAQLNLSYTEVKAPFDGIVTAREVSLGQL 214 Query: 231 VGVASPTQLATIVQLDPIYVNFNVNEQDVQRVRDEARRRGLTVNELRQLPVEVGLQTETG 290 VG SPT LATIVQL PIYVNF V+E DVQ +RD R R +T EL+++PVEVGLQ+ETG Sbjct: 215 VGAGSPTTLATIVQLQPIYVNFYVSESDVQSIRDNIRARAITAEELKKIPVEVGLQSETG 274 >ref|YP_002977590.1| efflux transporter, RND family, MFP subunit [Rhizobium leguminosarum bv. trifolii WSM1325] gb|ACS58051.1| efflux transporter, RND family, MFP subunit [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 398 Score = 230 bits (586), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 115/255 (45%), Positives = 173/255 (67%), Gaps = 4/255 (1%) Query: 40 VRLRNAPLARIAFVVSAFVSLSACEQ--NSFVAPPPPKVEVAPPVQRAITRYLDATGNTA 97 +R+R ++ +++ L+ CE+ N++VAPPPP V +A PVQ+ +T Y + TGNTA Sbjct: 1 MRVRLYQGLHLSVMLAGMAILAGCEESGNTYVAPPPPPVRIAQPVQQPVTLYFELTGNTA 60 Query: 98 PIQTVDLVARVQGFLQAINYQDGSFVKEGTTLFTIEPETYKLKLEQAQAAEVGAQATLKQ 157 P+ +VD+ ARVQG++Q+I+YQDG V +GT LF IE TY+ +L+QA+A+ QA+ Sbjct: 61 PLNSVDIEARVQGYVQSIDYQDGMTVMKGTKLFGIERNTYQAQLDQAKASLASQQASQVG 120 Query: 158 AELDFKRQTDLVQRQAVSQATLDTSTSTRDNAQASLQQAQVNTRIAAVNYGYTNVAAPFD 217 A+ ++ RQ +L ++Q +Q +D++ +T D A AS+ AQ N +A +N GYT V APFD Sbjct: 121 AKQEYDRQLNLSKQQVTTQTAVDSAKATLDEANASILNAQANLDLATINLGYTEVLAPFD 180 Query: 218 GIVSNHLVSVGELVGVASPTQLATIVQLDPIYVNFNVNEQDVQRVRDEARRRGLTVN--E 275 G V++HLV +G LVGV+ PT+LA+IVQ DP+Y FNV+E V +++ R+G T + Sbjct: 181 GTVTDHLVDIGALVGVSGPTKLASIVQTDPLYAYFNVSETQVLMIKETLARQGRTFKQTD 240 Query: 276 LRQLPVEVGLQTETG 290 L +P E+GLQTE G Sbjct: 241 LPSIPAELGLQTEEG 255