BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0037.p (154 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001239542.1| biopolymer transport protein ExbD [Bradyrhiz... 231 3e-59 ref|YP_001237453.1| biopolymer transport exbD protein [Bradyrhiz... 224 3e-57 ref|ZP_01044838.1| Biopolymer transport protein ExbD/TolR [Nitro... 223 6e-57 ref|ZP_01046785.1| Biopolymer transport protein ExbD/TolR [Nitro... 223 8e-57 ref|NP_770547.1| biopolymer transport protein [Bradyrhizobium ja... 222 2e-56 >ref|YP_001239542.1| biopolymer transport protein ExbD [Bradyrhizobium sp. BTAi1] gb|ABQ35636.1| outer membrane transport energization protein ExbD [Bradyrhizobium sp. BTAi1] Length = 156 Score = 231 bits (588), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 118/156 (75%), Positives = 133/156 (85%), Gaps = 2/156 (1%) Query: 1 MAVSISENDGDDDFAESHEINVTPFIDVMLVLLIIFMVAAPLSTVDLPIDLPTSSATPQK 60 MAVS+SE D DDDF E+H+INVTPFIDV+LVLLIIFMVAAPLSTVDLPIDLP+SSA PQK Sbjct: 1 MAVSLSEGDLDDDFDETHDINVTPFIDVILVLLIIFMVAAPLSTVDLPIDLPSSSAQPQK 60 Query: 61 KPDKPTYLSIKPDLTLAIGENAVKRVDLVNSLDAIPDMSRDKYVFLRADRMVPYGELMGV 120 KPDKPTY+SIKPDL LAIGEN VKRVDLV LDA+P+ S+D+ +FLRAD+ VPYGELMGV Sbjct: 61 KPDKPTYVSIKPDLGLAIGENLVKRVDLVRELDAMPEASKDRPIFLRADKQVPYGELMGV 120 Query: 121 MELLRAGGYTHVKLVALEGVPGAPAA--AQADPAKP 154 +ELLRAGGYT +KLVALE P A A PA+P Sbjct: 121 LELLRAGGYTKIKLVALEAPPAAATGLPAATPPAQP 156 >ref|YP_001237453.1| biopolymer transport exbD protein [Bradyrhizobium sp. BTAi1] gb|ABQ33547.1| outer membrane transport energization protein ExbD [Bradyrhizobium sp. BTAi1] Length = 151 Score = 224 bits (571), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 110/148 (74%), Positives = 126/148 (85%) Query: 1 MAVSISENDGDDDFAESHEINVTPFIDVMLVLLIIFMVAAPLSTVDLPIDLPTSSATPQK 60 MAVS+SE DGDDD ES +INVTPFIDV+LVLLIIFMVAAPLSTVD+P+DLPTS+ATPQK Sbjct: 1 MAVSLSEADGDDDLGESSDINVTPFIDVILVLLIIFMVAAPLSTVDVPVDLPTSTATPQK 60 Query: 61 KPDKPTYLSIKPDLTLAIGENAVKRVDLVNSLDAIPDMSRDKYVFLRADRMVPYGELMGV 120 KPDKP Y+SIKPDLTL +GE VKR LV SL+ IP+ ++DK+VFLRADR VPYGELM V Sbjct: 61 KPDKPIYVSIKPDLTLFVGEEQVKRASLVGSLEHIPEATKDKFVFLRADRGVPYGELMDV 120 Query: 121 MELLRAGGYTHVKLVALEGVPGAPAAAQ 148 MELLR GGY+ +KLV +EGV A A AQ Sbjct: 121 MELLRTGGYSKIKLVTVEGVSQAAATAQ 148 >ref|ZP_01044838.1| Biopolymer transport protein ExbD/TolR [Nitrobacter sp. Nb-311A] ref|ZP_01045758.1| Biopolymer transport protein ExbD/TolR [Nitrobacter sp. Nb-311A] ref|ZP_01046412.1| Biopolymer transport protein ExbD/TolR [Nitrobacter sp. Nb-311A] ref|ZP_01048501.1| Biopolymer transport protein ExbD/TolR [Nitrobacter sp. Nb-311A] gb|EAQ33552.1| Biopolymer transport protein ExbD/TolR [Nitrobacter sp. Nb-311A] gb|EAQ35726.1| Biopolymer transport protein ExbD/TolR [Nitrobacter sp. Nb-311A] gb|EAQ36129.1| Biopolymer transport protein ExbD/TolR [Nitrobacter sp. Nb-311A] gb|EAQ36843.1| Biopolymer transport protein ExbD/TolR [Nitrobacter sp. Nb-311A] Length = 156 Score = 223 bits (569), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 112/156 (71%), Positives = 134/156 (85%), Gaps = 5/156 (3%) Query: 1 MAVSISEN--DGDDDFAESHEINVTPFIDVMLVLLIIFMVAAPLSTVDLPIDLPTSSATP 58 M SI+E D D+D+AE+H+INVTPFIDV+LVLLIIFMVAAPLSTVDLP++LPTSSATP Sbjct: 1 MGASIAEGGFDDDEDYAEAHDINVTPFIDVILVLLIIFMVAAPLSTVDLPVNLPTSSATP 60 Query: 59 QKKPDKPTYLSIKPDLTLAIGENAVKRVDLVNSLDAIPDMSRDKYVFLRADRMVPYGELM 118 QKKPDKPTY+SIK DL +AIGE VKRVDLV +LD+ P+M++D ++FLRADR VPYG+LM Sbjct: 61 QKKPDKPTYVSIKADLAVAIGETMVKRVDLVRTLDSTPNMTKDSFIFLRADRAVPYGDLM 120 Query: 119 GVMELLRAGGYTHVKLVALEGVPGA---PAAAQADP 151 V+E+LRAGG+T +KLVALEGVP A PAAA A P Sbjct: 121 DVLEILRAGGFTKIKLVALEGVPDAQSVPAAANAKP 156 >ref|ZP_01046785.1| Biopolymer transport protein ExbD/TolR [Nitrobacter sp. Nb-311A] gb|EAQ35338.1| Biopolymer transport protein ExbD/TolR [Nitrobacter sp. Nb-311A] Length = 156 Score = 223 bits (568), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 112/156 (71%), Positives = 134/156 (85%), Gaps = 5/156 (3%) Query: 1 MAVSISEN--DGDDDFAESHEINVTPFIDVMLVLLIIFMVAAPLSTVDLPIDLPTSSATP 58 M SI+E D D+D+AE+HEINVTPFIDV+LVLLIIFMVAAPLSTVDLP++LPTSSATP Sbjct: 1 MGASIAEGGLDDDEDYAEAHEINVTPFIDVILVLLIIFMVAAPLSTVDLPVNLPTSSATP 60 Query: 59 QKKPDKPTYLSIKPDLTLAIGENAVKRVDLVNSLDAIPDMSRDKYVFLRADRMVPYGELM 118 QKKPDKPTY+SIK DL +AIGE VKRVDLV +LD+ P++++D ++FLRADR VPYG+LM Sbjct: 61 QKKPDKPTYVSIKADLAVAIGETMVKRVDLVRTLDSTPNITKDSFIFLRADRAVPYGDLM 120 Query: 119 GVMELLRAGGYTHVKLVALEGVPGA---PAAAQADP 151 V+E+LRAGG+T +KLVALEGVP A PAAA A P Sbjct: 121 DVLEILRAGGFTKIKLVALEGVPDAQSVPAAADAKP 156 >ref|NP_770547.1| biopolymer transport protein [Bradyrhizobium japonicum USDA 110] dbj|BAC49172.1| biopolymer transport protein [Bradyrhizobium japonicum USDA 110] Length = 154 Score = 222 bits (565), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 115/141 (81%), Positives = 131/141 (92%) Query: 1 MAVSISENDGDDDFAESHEINVTPFIDVMLVLLIIFMVAAPLSTVDLPIDLPTSSATPQK 60 MAVS+++ND DDDF+E+H+INVTPFIDV+LVLLIIFMVAAPLSTVDLPIDLPTSS+TPQK Sbjct: 1 MAVSLADNDDDDDFSETHDINVTPFIDVILVLLIIFMVAAPLSTVDLPIDLPTSSSTPQK 60 Query: 61 KPDKPTYLSIKPDLTLAIGENAVKRVDLVNSLDAIPDMSRDKYVFLRADRMVPYGELMGV 120 KPDKPTYLSIK DLTLAIGE++V R +L+ +LD + DMS+DKYVFLRADR VPYGELMGV Sbjct: 61 KPDKPTYLSIKRDLTLAIGEDSVHRAELIGTLDGLSDMSKDKYVFLRADRSVPYGELMGV 120 Query: 121 MELLRAGGYTHVKLVALEGVP 141 MELLR+GGYT VKLVALEG P Sbjct: 121 MELLRSGGYTRVKLVALEGPP 141