BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0034.p         (142 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_01048499.1| hypothetical protein NB311A_10061 [Nitrobacte...   162   2e-38
ref|YP_317883.1| hypothetical protein Nwi_1270 [Nitrobacter wino...   159   1e-37
ref|YP_001206598.1| hypothetical protein BRADO4648 [Bradyrhizobi...   153   9e-36
ref|NP_770549.1| hypothetical protein bll3909 [Bradyrhizobium ja...   151   3e-35
ref|YP_001239544.1| hypothetical protein BBta_3546 [Bradyrhizobi...   145   2e-33

>ref|ZP_01048499.1| hypothetical protein NB311A_10061 [Nitrobacter sp. Nb-311A]
 gb|EAQ33550.1| hypothetical protein NB311A_10061 [Nitrobacter sp. Nb-311A]
          Length = 145

 Score =  162 bits (409), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 76/142 (53%), Positives = 105/142 (73%), Gaps = 3/142 (2%)

Query: 2   VIKAADMLIARRADTRARADFATWKMMAKLNGASALPPEAQNFLAIYNKLLGQMSEADAG 61
           +IKA D +IARRADT+ARADFATWKMM KLNGAS+LP EA  FLA Y  L   M+EA+A 
Sbjct: 1   MIKAQDKMIARRADTKARADFATWKMMVKLNGASSLPAEALTFLASYKSLAETMAEAEAS 60

Query: 62  EATIQEMYRTYYVEMGGAGKAPEVPARAREPVADSGNVTTFRRLPPKKTSTSDPNAKRS- 120
           EATI+ +Y++YYV+MGG G AP++ +  ++P+ D+ NV  F+R  P+    ++ +A ++ 
Sbjct: 61  EATIELIYKSYYVDMGGTGTAPDIKSMPKDPIVDTSNVMAFKRPSPQPLPAANSSATKAR 120

Query: 121 --MPVALIFACLVVVYVAIRYY 140
             +PVALIF CL ++YV IRY+
Sbjct: 121 PRLPVALIFICLALIYVGIRYF 142


>ref|YP_317883.1| hypothetical protein Nwi_1270 [Nitrobacter winogradskyi Nb-255]
 gb|ABA04531.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255]
          Length = 137

 Score =  159 bits (402), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 76/134 (56%), Positives = 99/134 (73%), Gaps = 2/134 (1%)

Query: 9   LIARRADTRARADFATWKMMAKLNGASALPPEAQNFLAIYNKLLGQMSEADAGEATIQEM 68
           +IARRADT+ARADFATWKMM KLNGAS+LP EA  FLA Y  L   M+E +A EATI+ +
Sbjct: 1   MIARRADTKARADFATWKMMVKLNGASSLPTEALTFLASYKSLAETMAETEASEATIELI 60

Query: 69  YRTYYVEMGGAGKAPEVPARAREPVADSGNVTTFRRLPPK--KTSTSDPNAKRSMPVALI 126
           Y++YYV+MGG G AP+V +  +EP+ D+ NV  F+R  P+   +  S P A+  +PVALI
Sbjct: 61  YKSYYVDMGGTGTAPDVKSMPKEPIVDTSNVMAFKRPAPQPAPSVNSAPGARPRLPVALI 120

Query: 127 FACLVVVYVAIRYY 140
           F CLV++YV IRY+
Sbjct: 121 FICLVLIYVGIRYF 134


>ref|YP_001206598.1| hypothetical protein BRADO4648 [Bradyrhizobium sp. ORS 278]
 emb|CAL78380.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278]
          Length = 134

 Score =  153 bits (386), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 92/135 (68%), Positives = 100/135 (74%), Gaps = 3/135 (2%)

Query: 8   MLIARRADTRARADFATWKMMAKLNGASALPPEAQNFLAIYNKLLGQMSEADAGEATIQE 67
           M+IARRADTRARADFATWKM+AKLNGAS LPP AQ FLA Y   L  M+E +A EATI+E
Sbjct: 1   MMIARRADTRARADFATWKMIAKLNGASGLPPAAQEFLASYKTRLADMTEHEATEATIRE 60

Query: 68  MYRTYYVEMGGAGKAPEVPARAREPVADSGNVTTFRRLPPK-KTSTSDPNAKRSMPVALI 126
           MY+ YY EMGG G  PEV     EPV D  NVT FR+LPPK K S S P A+R MPVALI
Sbjct: 61  MYKAYYAEMGGGGAPPEVKPVKAEPVTD--NVTAFRKLPPKPKASPSGPAAQRKMPVALI 118

Query: 127 FACLVVVYVAIRYYW 141
           FA L  VYVAIR YW
Sbjct: 119 FAALCAVYVAIRLYW 133


>ref|NP_770549.1| hypothetical protein bll3909 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC49174.1| bll3909 [Bradyrhizobium japonicum USDA 110]
          Length = 140

 Score =  151 bits (382), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 93/142 (65%), Positives = 101/142 (71%), Gaps = 9/142 (6%)

Query: 8   MLIARRADTRARADFATWKMMAKLNGASALPPEAQNFLAIYNKLLGQMSEADAGEATIQE 67
           MLIARRADTRARADFATWKMMAKLNG+SALPPEAQ FLA Y  LL QMSE +A EATI  
Sbjct: 1   MLIARRADTRARADFATWKMMAKLNGSSALPPEAQEFLASYKNLLAQMSEGEATEATIGA 60

Query: 68  MYRTYYVEMGGAGKAPEVPARAREPVADSGNVTTFRRLPPK-------KTSTSDPNAKRS 120
           +YR YY EMGGAG  P+V  R R P   + NVT FRR  PK         +T     KR 
Sbjct: 61  IYRAYYAEMGGAGTPPDV--RTRPPETAADNVTAFRRPAPKPKRSAAFGATTLGGTQKRP 118

Query: 121 MPVALIFACLVVVYVAIRYYWK 142
           +PVALIFACLVVVYV IR YW+
Sbjct: 119 LPVALIFACLVVVYVGIRLYWR 140


>ref|YP_001239544.1| hypothetical protein BBta_3546 [Bradyrhizobium sp. BTAi1]
 gb|ABQ35638.1| hypothetical protein BBta_3546 [Bradyrhizobium sp. BTAi1]
          Length = 134

 Score =  145 bits (366), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 87/135 (64%), Positives = 99/135 (73%), Gaps = 3/135 (2%)

Query: 8   MLIARRADTRARADFATWKMMAKLNGASALPPEAQNFLAIYNKLLGQMSEADAGEATIQE 67
           M+IARRADTRARADFATWKM+AKLNGAS LPP AQ FLA Y   L +MSE +A EATI+E
Sbjct: 1   MMIARRADTRARADFATWKMIAKLNGASGLPPAAQEFLASYKTRLNEMSEHEATEATIRE 60

Query: 68  MYRTYYVEMGGAGKAPEVPARAREPVADSGNVTTFRRLPPK-KTSTSDPNAKRSMPVALI 126
           MY+ YY EMGG G  PEV     EPV D  NVT FRRLPPK KT+ +  +  R MPVALI
Sbjct: 61  MYKAYYAEMGGGGAPPEVKPVKAEPVTD--NVTAFRRLPPKPKTAQTGRSTPRKMPVALI 118

Query: 127 FACLVVVYVAIRYYW 141
           F  L V++V I+ YW
Sbjct: 119 FIALCVLFVGIKLYW 133