BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0026.p (342 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770556.1| transcriptional regulator [Bradyrhizobium japon... 567 e-160 ref|YP_001239550.1| LacI family transcription regulator [Bradyrh... 550 e-154 ref|ZP_08629177.1| gluconate utilization system transcriptional ... 550 e-154 ref|YP_001205143.1| LacI family transcriptional regulator [Brady... 550 e-154 ref|YP_004611978.1| LacI family transcriptional regulator [Mesor... 403 e-110 >ref|NP_770556.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC49181.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 373 Score = 567 bits (1462), Expect = e-160, Method: Compositional matrix adjust. Identities = 268/341 (78%), Positives = 308/341 (90%) Query: 1 MARKRITPGKIRLAEVAKLAGVSPITASRFFRNPQALSAGKRARVESAAKELGYVPNLAA 60 M RKR GKIRLAEVA+LAGVSPITASRFFRNP+ALS KR RVESAAKELGYVPNLAA Sbjct: 8 MGRKRTKSGKIRLAEVAELAGVSPITASRFFRNPEALSVAKRTRVESAAKELGYVPNLAA 67 Query: 61 RALASQRTEVIGVLIPSLTNNVFSDVLRGIYDALDGSRYSIQLANTRYSILQEERLLRLF 120 RALASQRTEVIGVLIPSLTNNVFSDVLRGIYDA +G RYSIQL+NTRYSILQEE+LLRLF Sbjct: 68 RALASQRTEVIGVLIPSLTNNVFSDVLRGIYDASEGGRYSIQLSNTRYSILQEEKLLRLF 127 Query: 121 LAQKPAGLIITGINQTADSHRIMETVDCPIVQIMEVGPSPIDMMIGFSHFDAAKAAIAHL 180 LAQKPAGLI+TGI+QTA+S ++E DCPIVQIME+GP+P+DMMIGFSH++AA+AA+AHL Sbjct: 128 LAQKPAGLIVTGIDQTAESRAMLEAADCPIVQIMEIGPNPVDMMIGFSHYEAARAAVAHL 187 Query: 181 LAQGYRRIGFLGARMDPRVQRRLDGYRFAMTEAALFDPQLIVTTAIPTSVTLGGTLFADL 240 AQG+R+IGF+GARMDPRVQRRLDGY AM +A+LF+ +L+VTTA PTSVTLGG LF DL Sbjct: 188 FAQGHRKIGFVGARMDPRVQRRLDGYVSAMKDASLFEQRLVVTTATPTSVTLGGALFTDL 247 Query: 241 LAKAPDIDAVFCVNDDLALGALFECKRRHMAVPEQMAIVGFNDLEFMASSEPTLSSVRTN 300 LA+ PD+DAVFC NDDLALG LFEC+RR + VPEQ+AIVGFNDLEFMAS+ PTL+SVRTN Sbjct: 248 LAREPDLDAVFCANDDLALGVLFECRRREIGVPEQIAIVGFNDLEFMASAVPTLTSVRTN 307 Query: 301 RYEMGRNAAVMVIETLEGRRPAEPVVDLGFSVMERQSSARR 341 RYEMG+ AA M+IE ++GRRP +PV+DLGF V+ERQSS+ R Sbjct: 308 RYEMGKTAATMLIEAIDGRRPEQPVLDLGFKVIERQSSSAR 348 >ref|YP_001239550.1| LacI family transcription regulator [Bradyrhizobium sp. BTAi1] gb|ABQ35644.1| transcriptional regulator, LacI family [Bradyrhizobium sp. BTAi1] Length = 356 Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust. Identities = 261/342 (76%), Positives = 300/342 (87%) Query: 1 MARKRITPGKIRLAEVAKLAGVSPITASRFFRNPQALSAGKRARVESAAKELGYVPNLAA 60 M RK I PGK+RL EVA LAGVSPIT SRFFRNP +S G+R R+ESAAK+LGYVPNLAA Sbjct: 1 MGRKHIKPGKVRLTEVAALAGVSPITVSRFFRNPDTVSPGRRLRIESAAKDLGYVPNLAA 60 Query: 61 RALASQRTEVIGVLIPSLTNNVFSDVLRGIYDALDGSRYSIQLANTRYSILQEERLLRLF 120 RALASQRTEVIGVLIPSLTNNVFSDVLRGIYDA +GSRYSIQLANTRYS+LQEERLLRLF Sbjct: 61 RALASQRTEVIGVLIPSLTNNVFSDVLRGIYDAFEGSRYSIQLANTRYSVLQEERLLRLF 120 Query: 121 LAQKPAGLIITGINQTADSHRIMETVDCPIVQIMEVGPSPIDMMIGFSHFDAAKAAIAHL 180 L QKPAG+I+TG++QTA+ I++ DCP+VQIME+GP PIDMMIGFSH DA AAI+HL Sbjct: 121 LMQKPAGMIVTGVDQTAEGRAIVQAADCPVVQIMELGPDPIDMMIGFSHVDACFAAISHL 180 Query: 181 LAQGYRRIGFLGARMDPRVQRRLDGYRFAMTEAALFDPQLIVTTAIPTSVTLGGTLFADL 240 LAQG RRIGFLGARMDPRVQRRL GY+ AM A LFDP+LIVTTA+PTS T+GG+LF+DL Sbjct: 181 LAQGCRRIGFLGARMDPRVQRRLQGYQNAMKIAGLFDPRLIVTTAVPTSTTMGGSLFSDL 240 Query: 241 LAKAPDIDAVFCVNDDLALGALFECKRRHMAVPEQMAIVGFNDLEFMASSEPTLSSVRTN 300 + +APD+DAVFC NDDLALG LFEC+RRH+AVPEQ+AIVGFND+EFMAS+ P+L+SVRTN Sbjct: 241 MLRAPDVDAVFCANDDLALGVLFECQRRHIAVPEQIAIVGFNDMEFMASAVPSLTSVRTN 300 Query: 301 RYEMGRNAAVMVIETLEGRRPAEPVVDLGFSVMERQSSARRN 342 RYEMG AA M+++ +EGR E VVDLGF VMERQSS +R+ Sbjct: 301 RYEMGLRAATMIMDEIEGRPVTERVVDLGFQVMERQSSQQRH 342 >ref|ZP_08629177.1| gluconate utilization system transcriptional repressor [Bradyrhizobiaceae bacterium SG-6C] gb|EGP07670.1| gluconate utilization system transcriptional repressor [Bradyrhizobiaceae bacterium SG-6C] Length = 343 Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust. Identities = 265/341 (77%), Positives = 297/341 (87%) Query: 1 MARKRITPGKIRLAEVAKLAGVSPITASRFFRNPQALSAGKRARVESAAKELGYVPNLAA 60 MARKR GKIRL EVAKLAGVS ITASRFFRNP+ALS GKR RV SAAKELGYVPNLAA Sbjct: 1 MARKRAKSGKIRLTEVAKLAGVSQITASRFFRNPEALSIGKRERVASAAKELGYVPNLAA 60 Query: 61 RALASQRTEVIGVLIPSLTNNVFSDVLRGIYDALDGSRYSIQLANTRYSILQEERLLRLF 120 RALAS RTEVIGVLIPSLTNNVFSDVLRGIYDA +GSRYSIQ NTRYSILQEE+LLRLF Sbjct: 61 RALASHRTEVIGVLIPSLTNNVFSDVLRGIYDASEGSRYSIQFVNTRYSILQEEKLLRLF 120 Query: 121 LAQKPAGLIITGINQTADSHRIMETVDCPIVQIMEVGPSPIDMMIGFSHFDAAKAAIAHL 180 AQ PAG+I+TGINQT +S +ME ++CPIVQIME GP P+DMM+GFSH+DAA AAI+HL Sbjct: 121 QAQMPAGMIVTGINQTPESRLVMEAMNCPIVQIMETGPDPVDMMVGFSHYDAAFAAISHL 180 Query: 181 LAQGYRRIGFLGARMDPRVQRRLDGYRFAMTEAALFDPQLIVTTAIPTSVTLGGTLFADL 240 +AQGY+RIGFLGARMDPRVQRRL+GYR AM A LFD +L++TT +PT+VT GGTLFADL Sbjct: 181 IAQGYKRIGFLGARMDPRVQRRLEGYRDAMKAAGLFDQRLLLTTPVPTAVTRGGTLFADL 240 Query: 241 LAKAPDIDAVFCVNDDLALGALFECKRRHMAVPEQMAIVGFNDLEFMASSEPTLSSVRTN 300 LA APDIDAVFCVNDDLALG LFEC+RRH+ VP++MAIVGFNDLEFMAS+ P L+SVRTN Sbjct: 241 LASAPDIDAVFCVNDDLALGVLFECQRRHIPVPDKMAIVGFNDLEFMASTVPPLTSVRTN 300 Query: 301 RYEMGRNAAVMVIETLEGRRPAEPVVDLGFSVMERQSSARR 341 RYEMG+ A M+ +EG RP+EPVVDLGF +M RQSS R Sbjct: 301 RYEMGKRAVTMLTSAIEGERPSEPVVDLGFELMVRQSSMAR 341 >ref|YP_001205143.1| LacI family transcriptional regulator [Bradyrhizobium sp. ORS 278] emb|CAL76906.1| putative transcriptional regulatory protein, LacI family [Bradyrhizobium sp. ORS 278] Length = 364 Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust. Identities = 262/338 (77%), Positives = 299/338 (88%) Query: 1 MARKRITPGKIRLAEVAKLAGVSPITASRFFRNPQALSAGKRARVESAAKELGYVPNLAA 60 M RK+I PGK+RL EVA LAGVSPIT SRFFRNP +SAG+R R+ESAAK+LGYVPNLAA Sbjct: 1 MGRKQINPGKVRLTEVAALAGVSPITVSRFFRNPDTVSAGRRLRIESAAKDLGYVPNLAA 60 Query: 61 RALASQRTEVIGVLIPSLTNNVFSDVLRGIYDALDGSRYSIQLANTRYSILQEERLLRLF 120 RALASQRTEVIGVLIPSLTNNVFSDVLRGIYDA +GSRYSIQLANTRYS+LQEERLLRLF Sbjct: 61 RALASQRTEVIGVLIPSLTNNVFSDVLRGIYDAFEGSRYSIQLANTRYSVLQEERLLRLF 120 Query: 121 LAQKPAGLIITGINQTADSHRIMETVDCPIVQIMEVGPSPIDMMIGFSHFDAAKAAIAHL 180 L QKPAGLI+TG++QTA+ +++ DCP+VQIME+G PIDMMIGFSH DA AAI+HL Sbjct: 121 LMQKPAGLIVTGVDQTAEGRSLVQAADCPVVQIMELGADPIDMMIGFSHVDACFAAISHL 180 Query: 181 LAQGYRRIGFLGARMDPRVQRRLDGYRFAMTEAALFDPQLIVTTAIPTSVTLGGTLFADL 240 LAQG RRIGFLGARMDPRVQRRL GY+ AM A LFDP+LIVTTA+PTS T+GG+LF+DL Sbjct: 181 LAQGCRRIGFLGARMDPRVQRRLQGYQNAMKNAGLFDPRLIVTTAVPTSTTVGGSLFSDL 240 Query: 241 LAKAPDIDAVFCVNDDLALGALFECKRRHMAVPEQMAIVGFNDLEFMASSEPTLSSVRTN 300 + +APD+DAVFC NDDLALG LFEC+RRH+AVPEQ+AIVGFND+EFMAS+ PTL+SVRTN Sbjct: 241 MLRAPDLDAVFCANDDLALGVLFECQRRHIAVPEQLAIVGFNDMEFMASAVPTLTSVRTN 300 Query: 301 RYEMGRNAAVMVIETLEGRRPAEPVVDLGFSVMERQSS 338 RYEMG AA M+++ +EGR AE VVDLGF VMERQSS Sbjct: 301 RYEMGLRAAKMIMDEVEGRPVAERVVDLGFEVMERQSS 338 >ref|YP_004611978.1| LacI family transcriptional regulator [Mesorhizobium opportunistum WSM2075] gb|AEH87884.1| transcriptional regulator, LacI family [Mesorhizobium opportunistum WSM2075] Length = 344 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 189/338 (55%), Positives = 249/338 (73%) Query: 3 RKRITPGKIRLAEVAKLAGVSPITASRFFRNPQALSAGKRARVESAAKELGYVPNLAARA 62 R R G+ +++VA+ AGV IT SR R P+ +S R ++++A ELGYVP+ ARA Sbjct: 7 RSRRGGGRPTISDVARKAGVGAITVSRALREPERVSQDLRRQIQAAVDELGYVPDPNARA 66 Query: 63 LASQRTEVIGVLIPSLTNNVFSDVLRGIYDALDGSRYSIQLANTRYSILQEERLLRLFLA 122 LAS R EV GVL+PSLTNNVF++V+RGIYD+L S + IQL NT YS L+EERLL+LF + Sbjct: 67 LASARAEVFGVLVPSLTNNVFAEVVRGIYDSLSASPFRIQLGNTHYSGLEEERLLQLFGS 126 Query: 123 QKPAGLIITGINQTADSHRIMETVDCPIVQIMEVGPSPIDMMIGFSHFDAAKAAIAHLLA 182 Q+PA LI+ GI+QT S R++E CP+VQ+ME+GP P+DMM+GFSH D + A HL+ Sbjct: 127 QRPAALIVAGIDQTPSSRRLLENAGCPVVQVMEIGPDPVDMMVGFSHLDGGRTATEHLIE 186 Query: 183 QGYRRIGFLGARMDPRVQRRLDGYRFAMTEAALFDPQLIVTTAIPTSVTLGGTLFADLLA 242 GYRR+GF+GARMDPR QRRL GYR AM +A LFDP+L+ TT +P+SV+LG LF D LA Sbjct: 187 MGYRRVGFIGARMDPRSQRRLAGYRIAMEKAGLFDPRLVTTTPVPSSVSLGRELFRDALA 246 Query: 243 KAPDIDAVFCVNDDLALGALFECKRRHMAVPEQMAIVGFNDLEFMASSEPTLSSVRTNRY 302 K P +D VFC NDD+ALG LFEC R + VP+ + IVGFNDL+ M + P+++S+RT+RY Sbjct: 247 KVPTLDGVFCNNDDIALGVLFECHRAAIDVPKTIGIVGFNDLDMMQVAFPSVTSIRTHRY 306 Query: 303 EMGRNAAVMVIETLEGRRPAEPVVDLGFSVMERQSSAR 340 E+GR A M + + G RP + VVDLGF + R+S+AR Sbjct: 307 EIGRRAVAMALAAIGGDRPQQRVVDLGFELKRRESTAR 344