BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0024.p (439 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770558.1| ABC transporter substrate-binding protein [Brad... 778 0.0 ref|YP_001767810.1| extracellular solute-binding protein [Methyl... 551 e-155 ref|YP_002496715.1| family 1 extracellular solute-binding protei... 540 e-151 ref|ZP_08629179.1| ABC transporter substrate-binding protein [Br... 533 e-149 ref|YP_533500.1| twin-arginine translocation pathway signal [Rho... 526 e-147 >ref|NP_770558.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC49183.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum USDA 110] Length = 439 Score = 778 bits (2008), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/439 (84%), Positives = 403/439 (91%) Query: 1 MHDFTRRSLLQGGTALAATGILTGPALFDFAKAWAQSAPWKAEPGAKLTVMRWKRFVPAE 60 M DFTRR+LLQGGTALAATG LTGPALFDFA+AWA +PWKAEPGAKLTVMRWKRFVP E Sbjct: 1 MQDFTRRALLQGGTALAATGALTGPALFDFARAWAADSPWKAEPGAKLTVMRWKRFVPQE 60 Query: 61 DDAFNAMVAAFKSATGTEMNVFSESFEDVQPKASVAANTGSGLDLAWGLHTLPQLFPTKV 120 D+AFNAMVAAFK+ATGTEMNVFSESFEDVQPKASVAANTGSGLDLAWGLHTLPQLFPTKV Sbjct: 61 DEAFNAMVAAFKTATGTEMNVFSESFEDVQPKASVAANTGSGLDLAWGLHTLPQLFPTKV 120 Query: 121 LKMNDVADYLGNKYGGWTEAAAKTCKQGNDWLGIPVATVGGYLTYRKSAVEKAGFKQVPS 180 LKMNDVADYLG KYGGWT+AAAKTCK G+DWLGIPVAT GGY+TYRKSA +KAGFK+ P Sbjct: 121 LKMNDVADYLGKKYGGWTDAAAKTCKLGDDWLGIPVATNGGYMTYRKSATDKAGFKEFPK 180 Query: 181 DFPAYLELCKALKKNNTPAGFALGHATGDANAWVHNILWGHNAWTVDKDDKVIINSSETM 240 DFP +LE+CKALK NNTPAGFALGHA+GD N+W+H +LWGH A+TVD++DKVIINS ET Sbjct: 181 DFPGFLEMCKALKANNTPAGFALGHASGDGNSWLHWVLWGHGAYTVDQNDKVIINSPETA 240 Query: 241 KALEYAKALSETFIPGVASWNDSSNNKAFLSGELFLTSNGISIYVAAKDDPSKKELAEDI 300 KALEY KAL ETFIPG SWNDSSNNKA+L+GEL+ T+NGISIYV AK DP+KKEL ED Sbjct: 241 KALEYCKALYETFIPGTPSWNDSSNNKAYLAGELYCTANGISIYVGAKTDPTKKELTEDT 300 Query: 301 DHALWPVGPIGKPTELQLAVPILAFNFCKYPNAAKAFIAFMLEKENFEKWLSGARGYLTH 360 HALWPVGPIGKPTELQLA+PILAFNF KYPNAAKAFIAFMLEKEN+EKWLSGA+GYLT Sbjct: 301 YHALWPVGPIGKPTELQLALPILAFNFTKYPNAAKAFIAFMLEKENYEKWLSGAQGYLTQ 360 Query: 361 TLNAYDSAPVWTADPKNAVFGQASKRALPASGIGTPGEKAATAIADFIVVDMFANYCTGA 420 TLNAY++APVWTADPKNAVF QASKR LPASGIGT GEKAATAIADFIVVDMFANYCTG Sbjct: 361 TLNAYETAPVWTADPKNAVFAQASKRTLPASGIGTVGEKAATAIADFIVVDMFANYCTGT 420 Query: 421 KDGKAAMAEAERQLKRIYR 439 KD K +MAEAERQLKRIYR Sbjct: 421 KDVKGSMAEAERQLKRIYR 439 >ref|YP_001767810.1| extracellular solute-binding protein [Methylobacterium sp. 4-46] gb|ACA15376.1| extracellular solute-binding protein family 1 [Methylobacterium sp. 4-46] Length = 436 Score = 551 bits (1420), Expect = e-155, Method: Compositional matrix adjust. Identities = 265/440 (60%), Positives = 331/440 (75%), Gaps = 7/440 (1%) Query: 1 MHDFTRRSLLQGGTALAATGILTGPALFD-FAKAWAQSAPWKAEPGAKLTVMRWKRFVPA 59 M F RR +L+ G AL L+G A D FA+AWAQ + WK EPGA L ++RWKRF+P+ Sbjct: 1 MTFFDRRQILKAGAALG----LSGAACLDGFARAWAQESQWKPEPGASLKLLRWKRFIPS 56 Query: 60 EDDAFNAMVAAFKSATGTEMNVFSESFEDVQPKASVAANTGSGLDLAWGLHTLPQLFPTK 119 ED+AF +V AF ATG ++V SESF+D+QPKASVAANTG G D+ WGL++ P LFP+K Sbjct: 57 EDEAFMRLVDAFTKATGVPVSVTSESFDDIQPKASVAANTGQGPDMVWGLYSFPALFPSK 116 Query: 120 VLKMNDVADYLGNKYGGWTEAAAKTCKQGNDWLGIPVATVGGYLTYRKSAVEKAGFKQVP 179 L++ DVADYLG KYGGW AA K W+ IP+A GGYL YR +A++KAGF + P Sbjct: 117 CLEVGDVADYLGKKYGGWLPAAEAYGKVKGKWIAIPMAFNGGYLNYRIAAMQKAGFSKFP 176 Query: 180 SDFPAYLELCKALKKNNTPAGFALGHATGDANAWVHNILWGHNAWTVDKDDKVIINSSET 239 D +LELC+ALKKNNTP+GFALGHATGDAN+W+H LW H+A+ VD ++K+IINS ET Sbjct: 177 EDLGGFLELCRALKKNNTPSGFALGHATGDANSWIHWALWSHDAYLVDANEKIIINSPET 236 Query: 240 MKALEYAKALSETFIPGVASWNDSSNNKAFLSGELFLTSNGISIYVAAKDDPSKKELAED 299 KALEY K+L ETFIPG SWNDSSNNKAFLSGEL+LT+NGISIY AAK + +K++AED Sbjct: 237 AKALEYVKSLYETFIPGTVSWNDSSNNKAFLSGELYLTNNGISIYAAAKTE--RKDIAED 294 Query: 300 IDHALWPVGPIGKPTELQLAVPILAFNFCKYPNAAKAFIAFMLEKENFEKWLSGARGYLT 359 +DHA++PVG GKPTE QLA PILA+ + K PNA KAF+AF LE +N+ WL A+GYL Sbjct: 295 MDHAVYPVGKSGKPTEFQLAFPILAYTYTKAPNACKAFMAFALEAQNYNAWLQAAQGYLC 354 Query: 360 HTLNAYDSAPVWTADPKNAVFGQASKRALPASGIGTPGEKAATAIADFIVVDMFANYCTG 419 H L AY + P+WT+DPKN VFG+AS R L A G+ EK A +ADF++VDMFA+YCTG Sbjct: 355 HPLKAYANNPIWTSDPKNKVFGEASTRTLAAGGLAPVSEKVAAVLADFVIVDMFASYCTG 414 Query: 420 AKDGKAAMAEAERQLKRIYR 439 +D K A+ AERQ +RI+R Sbjct: 415 REDVKGAIRTAERQAQRIFR 434 >ref|YP_002496715.1| family 1 extracellular solute-binding protein [Methylobacterium nodulans ORS 2060] gb|ACL56412.1| extracellular solute-binding protein family 1 [Methylobacterium nodulans ORS 2060] Length = 436 Score = 540 bits (1391), Expect = e-151, Method: Compositional matrix adjust. Identities = 267/439 (60%), Positives = 325/439 (74%), Gaps = 5/439 (1%) Query: 1 MHDFTRRSLLQGGTALAATGILTGPALFDFAKAWAQSAPWKAEPGAKLTVMRWKRFVPAE 60 M F RRS+L+GG AL L FA+AWAQ WK EPGA L ++RWKRF+P+E Sbjct: 1 MTSFDRRSILKGGAALGFAAASG---LDGFARAWAQENQWKPEPGASLKLLRWKRFIPSE 57 Query: 61 DDAFNAMVAAFKSATGTEMNVFSESFEDVQPKASVAANTGSGLDLAWGLHTLPQLFPTKV 120 D+AF +V AF ATG ++V SESF+D+QPKASVAANTG G D+ WGL++ P LFP+K Sbjct: 58 DEAFMRLVDAFTKATGVPVSVTSESFDDIQPKASVAANTGQGPDMVWGLYSFPALFPSKC 117 Query: 121 LKMNDVADYLGNKYGGWTEAAAKTCKQGNDWLGIPVATVGGYLTYRKSAVEKAGFKQVPS 180 L++ DVADYLG KYGGW AA K W+ IP+A GGY+ YR SAV+KAGF +VP Sbjct: 118 LEVGDVADYLGKKYGGWVPAAEAYGKVKGKWIAIPMAFNGGYINYRISAVQKAGFSKVPE 177 Query: 181 DFPAYLELCKALKKNNTPAGFALGHATGDANAWVHNILWGHNAWTVDKDDKVIINSSETM 240 D +LELC+ALKKNNTPAGFALGHATGD N+W H LW H+A+ VD ++K+IINS ET Sbjct: 178 DLDGFLELCRALKKNNTPAGFALGHATGDGNSWAHWALWSHDAYLVDANEKIIINSPETA 237 Query: 241 KALEYAKALSETFIPGVASWNDSSNNKAFLSGELFLTSNGISIYVAAKDDPSKKELAEDI 300 KALEY K L +TFIPG SWNDSSNNKAFLSGEL+LT+NGISIY AAK + +K++AED+ Sbjct: 238 KALEYVKNLYQTFIPGTVSWNDSSNNKAFLSGELYLTNNGISIYAAAKTE--RKDIAEDM 295 Query: 301 DHALWPVGPIGKPTELQLAVPILAFNFCKYPNAAKAFIAFMLEKENFEKWLSGARGYLTH 360 DHA++PVG GKPTE QLA PILA+ + K PNA KAF+AF LE +N+ WL A+GYL H Sbjct: 296 DHAVYPVGKSGKPTEFQLAFPILAYTYTKAPNACKAFMAFALEAQNYNPWLEAAQGYLCH 355 Query: 361 TLNAYDSAPVWTADPKNAVFGQASKRALPASGIGTPGEKAATAIADFIVVDMFANYCTGA 420 LNAY + P+WTADPKN VF +AS R L A G+ EK A +ADF+VVDMFA YCTG Sbjct: 356 PLNAYANNPIWTADPKNKVFREASVRTLAAGGLAPVSEKVAAVLADFVVVDMFAAYCTGR 415 Query: 421 KDGKAAMAEAERQLKRIYR 439 +D K A+ AERQ +RI+R Sbjct: 416 EDVKGAIRTAERQAQRIFR 434 >ref|ZP_08629179.1| ABC transporter substrate-binding protein [Bradyrhizobiaceae bacterium SG-6C] gb|EGP07672.1| ABC transporter substrate-binding protein [Bradyrhizobiaceae bacterium SG-6C] Length = 441 Score = 533 bits (1372), Expect = e-149, Method: Compositional matrix adjust. Identities = 264/443 (59%), Positives = 320/443 (72%), Gaps = 6/443 (1%) Query: 1 MHDFT--RRSLLQGG-TALAATGILTGPALFDFAKAWAQSAPWKAEPGAKLTVMRWKRFV 57 M FT RR+LL+GG + LA LT L FAKAWAQ+ WK E GAK+ ++RWKRFV Sbjct: 1 MDKFTPNRRALLKGGASVLAGAATLTTDQLLGFAKAWAQTTQWKPEKGAKINLLRWKRFV 60 Query: 58 PAEDDAFNAMVAAFKSATGTEMNVFSESFEDVQPKASVAANTGSGLDLAWGLHTLPQLFP 117 AED AF ++AAF ATG E+NV +ES++D+QPKASVAANTG GLD+ WGL++LP L P Sbjct: 61 EAEDKAFMDIIAAFTKATGVEVNVSNESYDDIQPKASVAANTGQGLDMVWGLYSLPHLLP 120 Query: 118 TKVLKMNDVADYLGNKYGGWTEAAAKTCK-QGNDWLGIPVATVGGYLTYRKSAVEKAGFK 176 TK + + DVADYLG KYGGW ++A K + W+GIPVA G + YR S+ EKAGFK Sbjct: 121 TKCVDVTDVADYLGKKYGGWADSANAYGKNKAGKWIGIPVAATGALMNYRISSCEKAGFK 180 Query: 177 QVPSDFPAYLELCKALKKNNTPAGFALGHATGDANAWVHNILWGHNAWTVDKDDKVIINS 236 + P D +LEL KAL KN TPAG A+GHA+GDAN W+H LW H + VDK+DKVIINS Sbjct: 181 EFPKDTAGFLELVKALNKNGTPAGMAIGHASGDANTWLHWALWTHGGYLVDKNDKVIINS 240 Query: 237 SETMKALEYAKALSETFIPGVASWNDSSNNKAFLSGELFLTSNGISIYVAAKDDPSKKEL 296 ET KALEY K L + FIPG ASWNDSSNNKAFL+G+L +T NGIS+YV AK + K + Sbjct: 241 PETAKALEYVKGLYDNFIPGTASWNDSSNNKAFLAGQLHVTCNGISVYVTAKRE--AKNI 298 Query: 297 AEDIDHALWPVGPIGKPTELQLAVPILAFNFCKYPNAAKAFIAFMLEKENFEKWLSGARG 356 AED++HA P+GP GKPTEL L +L FNF KYP A KA AFM+E + F WL A G Sbjct: 299 AEDMNHAYMPIGPAGKPTELHLPFTMLTFNFTKYPQACKALTAFMMEADQFNPWLVSASG 358 Query: 357 YLTHTLNAYDSAPVWTADPKNAVFGQASKRALPASGIGTPGEKAATAIADFIVVDMFANY 416 YL+ LN YD+ PVWT+DPKN V+ +KR L G+GT GE AA AIADF+VVDMFANY Sbjct: 359 YLSPFLNGYDNNPVWTSDPKNTVYRDVAKRTLTPGGLGTLGENAAAAIADFLVVDMFANY 418 Query: 417 CTGAKDGKAAMAEAERQLKRIYR 439 CTG +D K ++A AERQ KR+YR Sbjct: 419 CTGREDLKGSIAFAERQAKRLYR 441 >ref|YP_533500.1| twin-arginine translocation pathway signal [Rhodopseudomonas palustris BisB18] gb|ABD89181.1| Twin-arginine translocation pathway signal [Rhodopseudomonas palustris BisB18] Length = 441 Score = 526 bits (1355), Expect = e-147, Method: Compositional matrix adjust. Identities = 259/442 (58%), Positives = 320/442 (72%), Gaps = 5/442 (1%) Query: 1 MHDFT--RRSLLQGGTALAATGI-LTGPALFDFAKAWAQSAPWKAEPGAKLTVMRWKRFV 57 M FT RR+LL+G A ++ L +AKAWAQSAPWK E GAK+ ++RWKRFV Sbjct: 1 MTGFTPDRRTLLKGSALTLAAAATMSAEQLLGYAKAWAQSAPWKPEAGAKINLLRWKRFV 60 Query: 58 PAEDDAFNAMVAAFKSATGTEMNVFSESFEDVQPKASVAANTGSGLDLAWGLHTLPQLFP 117 AED AF +V AF+ ATG ++V +ES++D+QPKASVAANTG GLD+ WGL++LP L Sbjct: 61 EAEDVAFMKIVEAFQKATGCAVSVSNESYDDIQPKASVAANTGQGLDMVWGLYSLPHLLG 120 Query: 118 TKVLKMNDVADYLGNKYGGWTEAAAKTCKQGNDWLGIPVATVGGYLTYRKSAVEKAGFKQ 177 KV + DVA+YLG KYGGWT++A CK GN W+G+P+AT G + YR +A EKAGFK+ Sbjct: 121 NKVTDVADVANYLGGKYGGWTKSAEDYCKVGNKWVGVPIATTGALINYRIAACEKAGFKE 180 Query: 178 VPSDFPAYLELCKALKKNNTPAGFALGHATGDANAWVHNILWGHNAWTVDKDDKVIINSS 237 P D +LELCK L+KN TPAG ALGHA+GDAN W++ LW VD ++KV+INS Sbjct: 181 FPKDTAGFLELCKGLQKNGTPAGMALGHASGDANTWLYWALWTFGGNLVDANNKVVINSP 240 Query: 238 ETMKALEYAKALSETFIPGVASWNDSSNNKAFLSGELFLTSNGISIYVAAKDDPSKKELA 297 ET +LEY K L TFIPG SWNDSSNNKAFL G+L LT NGISIYV AK + +A Sbjct: 241 ETAASLEYIKQLYGTFIPGTVSWNDSSNNKAFLGGQLHLTVNGISIYVTAKRE--APAIA 298 Query: 298 EDIDHALWPVGPIGKPTELQLAVPILAFNFCKYPNAAKAFIAFMLEKENFEKWLSGARGY 357 ED++HA P+GP GKP+E+ LA P+L FNF KYP A KAF AFMLE F W+ A+GY Sbjct: 299 EDMNHAYMPIGPYGKPSEMHLAFPMLIFNFTKYPQACKAFTAFMLEAPQFNPWIEAAQGY 358 Query: 358 LTHTLNAYDSAPVWTADPKNAVFGQASKRALPASGIGTPGEKAATAIADFIVVDMFANYC 417 L+H LNAYD+ P+WTADPK + +KRA +G+GT GE AA+AIADFI+VDMFANYC Sbjct: 359 LSHFLNAYDANPIWTADPKTTPYRDVAKRARTPAGLGTLGENAASAIADFILVDMFANYC 418 Query: 418 TGAKDGKAAMAEAERQLKRIYR 439 TG +D K ++A AERQLKRIYR Sbjct: 419 TGREDVKGSIASAERQLKRIYR 440