BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0023.p (319 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770559.1| ABC transporter permease protein [Bradyrhizobiu... 600 e-170 ref|YP_004108250.1| binding-protein-dependent transporter inner ... 512 e-143 ref|YP_533499.1| binding-protein-dependent transport systems inn... 511 e-143 ref|YP_570446.1| binding-protein-dependent transport systems inn... 510 e-142 ref|YP_485715.1| binding-protein-dependent transport systems inn... 509 e-142 >ref|NP_770559.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] dbj|BAC49184.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] Length = 336 Score = 600 bits (1548), Expect = e-170, Method: Compositional matrix adjust. Identities = 297/319 (93%), Positives = 312/319 (97%), Gaps = 1/319 (0%) Query: 1 MADIALAPRRAKTEIREATAWDQLRHNKNWLGFWFMLPAMAFLIFFLAYPLGLGIWLSFT 60 MADIA+APR AK +I++A AWDQL+HN+NWLGFWFM+PAMAFLIFFLAYPLGLGIWLSFT Sbjct: 19 MADIAVAPR-AKPQIQKARAWDQLKHNRNWLGFWFMVPAMAFLIFFLAYPLGLGIWLSFT 77 Query: 61 DTRIGRVGHFIGTENYEWLWDDAIFWLSVFNTLLYTFIASAVKFAVGLYLALLLNERMPF 120 DTRIGRVGHFIGTENYEWLWDD+IFWLSVFNTLLYTF+ASAVKFAVGLYLALLLNE MPF Sbjct: 78 DTRIGRVGHFIGTENYEWLWDDSIFWLSVFNTLLYTFVASAVKFAVGLYLALLLNEHMPF 137 Query: 121 KALLRAAVLIPFIVPTVLSALAFWWIYDPQFSIISWSLKHLGLITQNINFLGDTTWARIC 180 KA+LRAAVLIPFIVPTVLSALAFWWI+D QFSIISWSL+HLGLI+QNINFLGDTTWARIC Sbjct: 138 KAMLRAAVLIPFIVPTVLSALAFWWIFDSQFSIISWSLRHLGLISQNINFLGDTTWARIC 197 Query: 181 VIFANIWRGVPFVAITLLAGLQTVQPSLYEAATLDGASRWQMFRYITYPLLTPIIAVVMT 240 VIFANIWRGVPFVAITLLAGLQTV PSLYEAATLDGA+RWQ FR+ITYPLLTPIIAVVMT Sbjct: 198 VIFANIWRGVPFVAITLLAGLQTVSPSLYEAATLDGATRWQNFRFITYPLLTPIIAVVMT 257 Query: 241 FSVLFTFTDFQLIWAMTRGGPVNATHLMATLSYQRAIIAGQLGEGAAISSAMIPFLLAAI 300 FSVLFTFTDFQLIWAMTRGGPVNATHLMATLSYQRAIIAGQLGEGAAISSAMIPFLLAAI Sbjct: 258 FSVLFTFTDFQLIWAMTRGGPVNATHLMATLSYQRAIIAGQLGEGAAISSAMIPFLLAAI 317 Query: 301 MVSWFGLQRRKWQQGESND 319 MVSWFGLQRRKWQQGESND Sbjct: 318 MVSWFGLQRRKWQQGESND 336 >ref|YP_004108250.1| binding-protein-dependent transporter inner membrane component [Rhodopseudomonas palustris DX-1] gb|ADU43517.1| binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris DX-1] Length = 317 Score = 512 bits (1318), Expect = e-143, Method: Compositional matrix adjust. Identities = 252/313 (80%), Positives = 278/313 (88%), Gaps = 3/313 (0%) Query: 7 APRRAKTEIREATAWDQLRHNKNWLGFWFMLPAMAFLIFFLAYPLGLGIWLSFTDTRIGR 66 AP R+ +AW QL+ N+N++ WFMLPA AFLI FLAYPL LG+W+SFTD RIGR Sbjct: 8 APGRSDGG---PSAWSQLKTNRNFIALWFMLPAAAFLILFLAYPLFLGVWMSFTDARIGR 64 Query: 67 VGHFIGTENYEWLWDDAIFWLSVFNTLLYTFIASAVKFAVGLYLALLLNERMPFKALLRA 126 G FIG ENYEWLWDD+IFWLSVFNT+LYT +ASA+KFAVGLYLALLLN MPFKA++RA Sbjct: 65 DGVFIGIENYEWLWDDSIFWLSVFNTILYTVVASAIKFAVGLYLALLLNRHMPFKAIIRA 124 Query: 127 AVLIPFIVPTVLSALAFWWIYDPQFSIISWSLKHLGLITQNINFLGDTTWARICVIFANI 186 AVL+PFIVPTVLSA+AFWWIYD QFSIISWSL LG+I QNINFLGDTTWAR VIFANI Sbjct: 125 AVLVPFIVPTVLSAIAFWWIYDSQFSIISWSLIKLGVIDQNINFLGDTTWARASVIFANI 184 Query: 187 WRGVPFVAITLLAGLQTVQPSLYEAATLDGASRWQMFRYITYPLLTPIIAVVMTFSVLFT 246 WRGVPFVAITLLAGLQTV PSLYEAATLDGA+ WQ FRYITYPLLTPIIAVVMTFSVLFT Sbjct: 185 WRGVPFVAITLLAGLQTVSPSLYEAATLDGATAWQRFRYITYPLLTPIIAVVMTFSVLFT 244 Query: 247 FTDFQLIWAMTRGGPVNATHLMATLSYQRAIIAGQLGEGAAISSAMIPFLLAAIMVSWFG 306 FTDFQLIWA+TRGGPVNATHLMATLSYQR I++G+LGEGAAI++AMIPFLLAAI +SWFG Sbjct: 245 FTDFQLIWALTRGGPVNATHLMATLSYQRGILSGRLGEGAAIATAMIPFLLAAIAISWFG 304 Query: 307 LQRRKWQQGESND 319 +QRRKWQQG ND Sbjct: 305 MQRRKWQQGSDND 317 >ref|YP_533499.1| binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris BisB18] gb|ABD89180.1| binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris BisB18] Length = 318 Score = 511 bits (1316), Expect = e-143, Method: Compositional matrix adjust. Identities = 247/309 (79%), Positives = 276/309 (89%) Query: 11 AKTEIREATAWDQLRHNKNWLGFWFMLPAMAFLIFFLAYPLGLGIWLSFTDTRIGRVGHF 70 + + A+AW++LR N+ WL WFMLPA AFLI FLAYPL LG+W+SFTD RIGR G F Sbjct: 10 GRRPMPAASAWERLRTNRGWLALWFMLPAAAFLILFLAYPLFLGVWMSFTDARIGRDGVF 69 Query: 71 IGTENYEWLWDDAIFWLSVFNTLLYTFIASAVKFAVGLYLALLLNERMPFKALLRAAVLI 130 IG ENY+WLWDD++FWLSVFNTLLYT +ASA+KFAVGLYLALLLN MPFKA++RAAVLI Sbjct: 70 IGLENYQWLWDDSVFWLSVFNTLLYTIVASAIKFAVGLYLALLLNRHMPFKAMIRAAVLI 129 Query: 131 PFIVPTVLSALAFWWIYDPQFSIISWSLKHLGLITQNINFLGDTTWARICVIFANIWRGV 190 PFIVPTVLSA+AFWWIYD QFSIISWSL +GLI +NINFLGD+ WAR VIFANIWRGV Sbjct: 130 PFIVPTVLSAIAFWWIYDSQFSIISWSLTKMGLIHENINFLGDSNWARASVIFANIWRGV 189 Query: 191 PFVAITLLAGLQTVQPSLYEAATLDGASRWQMFRYITYPLLTPIIAVVMTFSVLFTFTDF 250 PFVAITLLAGLQTV PSLYEAATLDGA+ WQ FRYITYPLLTPIIAVVMTFSVLFTFTDF Sbjct: 190 PFVAITLLAGLQTVSPSLYEAATLDGATSWQRFRYITYPLLTPIIAVVMTFSVLFTFTDF 249 Query: 251 QLIWAMTRGGPVNATHLMATLSYQRAIIAGQLGEGAAISSAMIPFLLAAIMVSWFGLQRR 310 QLIWA+TRGGPVNATHLMATLSYQR I++G+LGEGAAI++AMIPFL+AAI +SWFG+QRR Sbjct: 250 QLIWALTRGGPVNATHLMATLSYQRGILSGRLGEGAAIATAMIPFLMAAIAISWFGMQRR 309 Query: 311 KWQQGESND 319 KWQQG ND Sbjct: 310 KWQQGTDND 318 >ref|YP_570446.1| binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris BisB5] gb|ABE40545.1| binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris BisB5] Length = 317 Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust. Identities = 246/302 (81%), Positives = 273/302 (90%) Query: 18 ATAWDQLRHNKNWLGFWFMLPAMAFLIFFLAYPLGLGIWLSFTDTRIGRVGHFIGTENYE 77 A+AW +L N+NWL WFM+PA AFLI FLAYPL LG+W+SFTD RIGR G ++G ENYE Sbjct: 16 ASAWQRLSTNRNWLALWFMMPAAAFLILFLAYPLFLGVWMSFTDARIGRDGVYVGVENYE 75 Query: 78 WLWDDAIFWLSVFNTLLYTFIASAVKFAVGLYLALLLNERMPFKALLRAAVLIPFIVPTV 137 WLWDD+IFWLSVFNT+LYT +ASA+KFAVGLYLALLLN MPFKA++RAAVL+PFIVPTV Sbjct: 76 WLWDDSIFWLSVFNTILYTAVASAIKFAVGLYLALLLNRHMPFKAMIRAAVLVPFIVPTV 135 Query: 138 LSALAFWWIYDPQFSIISWSLKHLGLITQNINFLGDTTWARICVIFANIWRGVPFVAITL 197 LSA+AFWWIYD QFSI+SWSL LG+I QNINFLGDT WAR VIFANIWRGVPFVAITL Sbjct: 136 LSAIAFWWIYDSQFSIVSWSLIKLGVIDQNINFLGDTAWARASVIFANIWRGVPFVAITL 195 Query: 198 LAGLQTVQPSLYEAATLDGASRWQMFRYITYPLLTPIIAVVMTFSVLFTFTDFQLIWAMT 257 LAGLQTV PSLYEAATLDGA+ WQ FRYITYPLLTPIIAVVMTFSVLFTFTDFQLIWA+T Sbjct: 196 LAGLQTVSPSLYEAATLDGATSWQRFRYITYPLLTPIIAVVMTFSVLFTFTDFQLIWALT 255 Query: 258 RGGPVNATHLMATLSYQRAIIAGQLGEGAAISSAMIPFLLAAIMVSWFGLQRRKWQQGES 317 RGGPVNATHLMATLSYQR I++G+LGEGAAI++AMIPFLLAAI +SWFG+QRRKWQQG Sbjct: 256 RGGPVNATHLMATLSYQRGILSGRLGEGAAIATAMIPFLLAAIAISWFGMQRRKWQQGTD 315 Query: 318 ND 319 ND Sbjct: 316 ND 317 >ref|YP_485715.1| binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris HaA2] gb|ABD06804.1| Binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris HaA2] Length = 317 Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust. Identities = 249/312 (79%), Positives = 276/312 (88%), Gaps = 3/312 (0%) Query: 8 PRRAKTEIREATAWDQLRHNKNWLGFWFMLPAMAFLIFFLAYPLGLGIWLSFTDTRIGRV 67 P R++ A+AW +L N+NWL WFM+PA AFLI FLAYPL LG+W+SFTD RIGR Sbjct: 9 PARSQGS---ASAWQRLSTNRNWLALWFMMPAAAFLILFLAYPLFLGVWMSFTDARIGRD 65 Query: 68 GHFIGTENYEWLWDDAIFWLSVFNTLLYTFIASAVKFAVGLYLALLLNERMPFKALLRAA 127 G ++G ENYEWLWDD+IFWLSVFNT+LYT +ASA+KFAVGLYLALLLN MPFKA++RAA Sbjct: 66 GVYVGVENYEWLWDDSIFWLSVFNTILYTTVASAIKFAVGLYLALLLNRHMPFKAMIRAA 125 Query: 128 VLIPFIVPTVLSALAFWWIYDPQFSIISWSLKHLGLITQNINFLGDTTWARICVIFANIW 187 VL+PFIVPTVLSA+AFWWIYD QFSIISWSL LGLI QNINFLGD WAR VIFANIW Sbjct: 126 VLVPFIVPTVLSAIAFWWIYDSQFSIISWSLIKLGLIDQNINFLGDPNWARASVIFANIW 185 Query: 188 RGVPFVAITLLAGLQTVQPSLYEAATLDGASRWQMFRYITYPLLTPIIAVVMTFSVLFTF 247 RGVPFVAITLLAGLQTV PSLYEAATLDGA+ WQ FRYITYPLLTPIIAVVMTFSVLFTF Sbjct: 186 RGVPFVAITLLAGLQTVSPSLYEAATLDGATAWQRFRYITYPLLTPIIAVVMTFSVLFTF 245 Query: 248 TDFQLIWAMTRGGPVNATHLMATLSYQRAIIAGQLGEGAAISSAMIPFLLAAIMVSWFGL 307 TDFQLIWA+TRGGPVNATHLMATLSYQR I++G+LGEGAAI++AMIPFLLAAI +SWFG+ Sbjct: 246 TDFQLIWALTRGGPVNATHLMATLSYQRGILSGRLGEGAAIATAMIPFLLAAISISWFGM 305 Query: 308 QRRKWQQGESND 319 QRRKWQQG ND Sbjct: 306 QRRKWQQGTDND 317