BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0022.p (307 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770560.1| ABC transporter permease protein [Bradyrhizobiu... 585 e-165 ref|YP_485716.1| binding-protein dependent transport system inne... 513 e-143 ref|ZP_08629181.1| maltose/maltodextrin ABC transporter, permeas... 511 e-143 ref|YP_001239554.1| putative ABC transporter permease [Bradyrhiz... 509 e-142 ref|YP_001205147.1| putative ABC transporter permease [Bradyrhiz... 509 e-142 >ref|NP_770560.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] dbj|BAC49185.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] Length = 307 Score = 585 bits (1508), Expect = e-165, Method: Compositional matrix adjust. Identities = 283/307 (92%), Positives = 300/307 (97%) Query: 1 MTDLPASKVDLKSILSTPSRVDNSEGMSYLQSVPRRIVTLYIPLSIIVIILLFPFYWMGL 60 MTDLPASKVDLKS+LSTP+R DNSEGMSYLQSVPRR+VTLY+PL+IIV++LLFPFYWM L Sbjct: 1 MTDLPASKVDLKSVLSTPARADNSEGMSYLQSVPRRMVTLYLPLTIIVVVLLFPFYWMAL 60 Query: 61 TAIKPDEQLLDLDKYNPFWTWNPTFKHIHKLLFESYYPHWLWNTMYVAVGATVLSIIASV 120 T++KPDEQLLDLDK+NPFWTWNPTFKH +KLLFESYYPHWLWNTMYVA+ ATVLSI+ASV Sbjct: 61 TSVKPDEQLLDLDKFNPFWTWNPTFKHFYKLLFESYYPHWLWNTMYVAICATVLSIVASV 120 Query: 121 LAAYAIVRLRYKGANVVGGLIFLAYLVPPSILFIPLATVVFQYGLFDSPLALILTYPTIL 180 AAYAIVRLRYKGAN+VGGLIFLAYLVPPSILFIPLATVV+QYGLFDSPLALILTYPTIL Sbjct: 121 FAAYAIVRLRYKGANLVGGLIFLAYLVPPSILFIPLATVVYQYGLFDSPLALILTYPTIL 180 Query: 181 IPFSTWLLMGYFKTIPFELEECALIDGASRWQILIKIVLPLAVPGLISAFIFCFTLCWNE 240 IPFSTWLLMGYFKTIPFELEECALIDGASRWQILIKIV+PLA+PGLISAFIFCFTLCWNE Sbjct: 181 IPFSTWLLMGYFKTIPFELEECALIDGASRWQILIKIVVPLAIPGLISAFIFCFTLCWNE 240 Query: 241 FIYALTFLQSTPNKTVPVAIVNEFVDGDIYRWGSLMAGALCGSLPLVILYAFFVEHYVSA 300 FIYALTFLQST NKTVPVAIVNEFVDGDIYRWGSLMAGAL GSLPLVILYAFFVEHYVSA Sbjct: 241 FIYALTFLQSTSNKTVPVAIVNEFVDGDIYRWGSLMAGALAGSLPLVILYAFFVEHYVSA 300 Query: 301 MTGAVKE 307 MTGAVKE Sbjct: 301 MTGAVKE 307 >ref|YP_485716.1| binding-protein dependent transport system inner membrane protein [Rhodopseudomonas palustris HaA2] gb|ABD06805.1| Binding-protein-dependent transport systems inner membrane component [Rhodopseudomonas palustris HaA2] Length = 307 Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust. Identities = 250/307 (81%), Positives = 275/307 (89%) Query: 1 MTDLPASKVDLKSILSTPSRVDNSEGMSYLQSVPRRIVTLYIPLSIIVIILLFPFYWMGL 60 MT+ AS L +T +R D+SEGMSYL+S+PRR+VTLY+PL IIV+ILLFPFYWM L Sbjct: 1 MTETTASDPRLAVKAATVARDDDSEGMSYLESLPRRLVTLYLPLFIIVVILLFPFYWMAL 60 Query: 61 TAIKPDEQLLDLDKYNPFWTWNPTFKHIHKLLFESYYPHWLWNTMYVAVGATVLSIIASV 120 T+IKPDEQL+D+D YNPFW PT KHI KLLFE+ YP WLWNTMYVA AT LSI+ASV Sbjct: 61 TSIKPDEQLIDMDTYNPFWVVKPTLKHISKLLFETQYPRWLWNTMYVAAAATTLSIVASV 120 Query: 121 LAAYAIVRLRYKGANVVGGLIFLAYLVPPSILFIPLATVVFQYGLFDSPLALILTYPTIL 180 LAAYAIVRLR++GA+ VGG IFLAYLVPPSILFIPLA+V+ YGLFDSPL+LIL YPT+L Sbjct: 121 LAAYAIVRLRFRGADSVGGAIFLAYLVPPSILFIPLASVIQAYGLFDSPLSLILVYPTLL 180 Query: 181 IPFSTWLLMGYFKTIPFELEECALIDGASRWQILIKIVLPLAVPGLISAFIFCFTLCWNE 240 IPFSTWLLMGYFKTIPFELEECALIDGASRWQIL +I++PLAVPGLISAFIF FTLCWNE Sbjct: 181 IPFSTWLLMGYFKTIPFELEECALIDGASRWQILTRIIVPLAVPGLISAFIFSFTLCWNE 240 Query: 241 FIYALTFLQSTPNKTVPVAIVNEFVDGDIYRWGSLMAGALCGSLPLVILYAFFVEHYVSA 300 FIYALTFLQSTPNKTVPVAIVNEFVDGDIY+WGSLMAGAL GSLPLVILYAFFVEHYVSA Sbjct: 241 FIYALTFLQSTPNKTVPVAIVNEFVDGDIYKWGSLMAGALVGSLPLVILYAFFVEHYVSA 300 Query: 301 MTGAVKE 307 MTGAVKE Sbjct: 301 MTGAVKE 307 >ref|ZP_08629181.1| maltose/maltodextrin ABC transporter, permease protein MalG [Bradyrhizobiaceae bacterium SG-6C] gb|EGP07674.1| maltose/maltodextrin ABC transporter, permease protein MalG [Bradyrhizobiaceae bacterium SG-6C] Length = 303 Score = 511 bits (1317), Expect = e-143, Method: Compositional matrix adjust. Identities = 248/294 (84%), Positives = 269/294 (91%) Query: 14 ILSTPSRVDNSEGMSYLQSVPRRIVTLYIPLSIIVIILLFPFYWMGLTAIKPDEQLLDLD 73 + +T + DNSEGMSYL+S+PR+IVTLYIPL I+V+ILLFPFYWM LT+IKPDEQL+D++ Sbjct: 10 VATTQAVTDNSEGMSYLESLPRKIVTLYIPLFILVVILLFPFYWMALTSIKPDEQLIDME 69 Query: 74 KYNPFWTWNPTFKHIHKLLFESYYPHWLWNTMYVAVGATVLSIIASVLAAYAIVRLRYKG 133 YNPFW PTFKHIHKLLFE+ YP WLWNTMYVA AT LSI+ASVLAAYAIVRLR+KG Sbjct: 70 TYNPFWVVKPTFKHIHKLLFETEYPRWLWNTMYVAAAATFLSIVASVLAAYAIVRLRFKG 129 Query: 134 ANVVGGLIFLAYLVPPSILFIPLATVVFQYGLFDSPLALILTYPTILIPFSTWLLMGYFK 193 A V LIFLAYLVPPSILFIPLA+V+ YGLFDSPL+LIL YPT+LIPFSTWLLMGYFK Sbjct: 130 AETVSALIFLAYLVPPSILFIPLASVIHSYGLFDSPLSLILVYPTLLIPFSTWLLMGYFK 189 Query: 194 TIPFELEECALIDGASRWQILIKIVLPLAVPGLISAFIFCFTLCWNEFIYALTFLQSTPN 253 TIP+ELEECALIDGASRWQIL KIVLPLAVPGLISAFIFCFTLCWNEFIYALTFL STPN Sbjct: 190 TIPYELEECALIDGASRWQILTKIVLPLAVPGLISAFIFCFTLCWNEFIYALTFLASTPN 249 Query: 254 KTVPVAIVNEFVDGDIYRWGSLMAGALCGSLPLVILYAFFVEHYVSAMTGAVKE 307 KTVPVAIVNEFVDGDIY+WGSLMAGAL GSLPLVILYAFFVEHYVSAMTGAVKE Sbjct: 250 KTVPVAIVNEFVDGDIYKWGSLMAGALVGSLPLVILYAFFVEHYVSAMTGAVKE 303 >ref|YP_001239554.1| putative ABC transporter permease [Bradyrhizobium sp. BTAi1] gb|ABQ35648.1| carbohydrate ABC transporter membrane protein 2, CUT1 family [Bradyrhizobium sp. BTAi1] Length = 302 Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust. Identities = 248/301 (82%), Positives = 275/301 (91%) Query: 7 SKVDLKSILSTPSRVDNSEGMSYLQSVPRRIVTLYIPLSIIVIILLFPFYWMGLTAIKPD 66 + L++ T + D SEGMSYL+S+PRR+VTLY+PL II+++LLFPFYWMGLT+IKPD Sbjct: 2 TDTALQAKAPTTAGSDESEGMSYLESLPRRLVTLYLPLFIILVVLLFPFYWMGLTSIKPD 61 Query: 67 EQLLDLDKYNPFWTWNPTFKHIHKLLFESYYPHWLWNTMYVAVGATVLSIIASVLAAYAI 126 EQL+D++KYNPFW +PTFKHI KLLFE+ YP WLWNTMYVAVGAT LSI ASVLAAYAI Sbjct: 62 EQLIDMEKYNPFWVVHPTFKHISKLLFETQYPRWLWNTMYVAVGATTLSIFASVLAAYAI 121 Query: 127 VRLRYKGANVVGGLIFLAYLVPPSILFIPLATVVFQYGLFDSPLALILTYPTILIPFSTW 186 VRLR+KGA+ VG LIF AYLVPPSILFIPLA+V+ YGLFDSPL+LIL YPT+LIPFSTW Sbjct: 122 VRLRFKGADTVGVLIFFAYLVPPSILFIPLASVIQAYGLFDSPLSLILVYPTLLIPFSTW 181 Query: 187 LLMGYFKTIPFELEECALIDGASRWQILIKIVLPLAVPGLISAFIFCFTLCWNEFIYALT 246 LLMGYFKTIPFELEECALIDGA+RWQIL+KIV+PLAVPGLISAFIF FTLCWNEFIYALT Sbjct: 182 LLMGYFKTIPFELEECALIDGANRWQILVKIVVPLAVPGLISAFIFSFTLCWNEFIYALT 241 Query: 247 FLQSTPNKTVPVAIVNEFVDGDIYRWGSLMAGALCGSLPLVILYAFFVEHYVSAMTGAVK 306 FLQSTPNKTVPVAIVNEFVDGDIY+WGSLMAGAL GSLPLVILYAFFVEHYVSAMTGAVK Sbjct: 242 FLQSTPNKTVPVAIVNEFVDGDIYKWGSLMAGALVGSLPLVILYAFFVEHYVSAMTGAVK 301 Query: 307 E 307 E Sbjct: 302 E 302 >ref|YP_001205147.1| putative ABC transporter permease [Bradyrhizobium sp. ORS 278] emb|CAL76910.1| putative ABC transporter permease protein [Bradyrhizobium sp. ORS 278] Length = 305 Score = 509 bits (1311), Expect = e-142, Method: Compositional matrix adjust. Identities = 246/286 (86%), Positives = 270/286 (94%) Query: 22 DNSEGMSYLQSVPRRIVTLYIPLSIIVIILLFPFYWMGLTAIKPDEQLLDLDKYNPFWTW 81 D+SEGMSYL+S+PRR++TLY+PL II+++LLFPFYWMGLT+IKPDEQL+D++KYNPFW Sbjct: 20 DDSEGMSYLESLPRRLITLYLPLGIILLVLLFPFYWMGLTSIKPDEQLIDMEKYNPFWVV 79 Query: 82 NPTFKHIHKLLFESYYPHWLWNTMYVAVGATVLSIIASVLAAYAIVRLRYKGANVVGGLI 141 +PTFKHI KLLFE+ YP WLWNTMYVAVGAT LSI ASVLAAYAIVRLR+KGA+ VG LI Sbjct: 80 HPTFKHISKLLFETQYPRWLWNTMYVAVGATTLSIFASVLAAYAIVRLRFKGADTVGVLI 139 Query: 142 FLAYLVPPSILFIPLATVVFQYGLFDSPLALILTYPTILIPFSTWLLMGYFKTIPFELEE 201 F AYLVPPSILFIPLA+V+ YGLFDSPL+LIL YPT+LIPFSTWLLMGYFKTIPFELEE Sbjct: 140 FFAYLVPPSILFIPLASVIQAYGLFDSPLSLILVYPTLLIPFSTWLLMGYFKTIPFELEE 199 Query: 202 CALIDGASRWQILIKIVLPLAVPGLISAFIFCFTLCWNEFIYALTFLQSTPNKTVPVAIV 261 CALIDGASRWQIL+KIV+PLAVPGLISAFIF FTLCWNEFIYALTFLQSTPNKTVPVAIV Sbjct: 200 CALIDGASRWQILVKIVVPLAVPGLISAFIFSFTLCWNEFIYALTFLQSTPNKTVPVAIV 259 Query: 262 NEFVDGDIYRWGSLMAGALCGSLPLVILYAFFVEHYVSAMTGAVKE 307 NEFVDGDIY+WGSLMAGAL GSLPLVILYAFFVEHYVSAMTGAVKE Sbjct: 260 NEFVDGDIYKWGSLMAGALVGSLPLVILYAFFVEHYVSAMTGAVKE 305