BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0020.p (318 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770562.1| 2-dehydro-3-deoxygluconokinase [Bradyrhizobium ... 427 e-118 ref|ZP_08629183.1| 2-dehydro-3-deoxygluconate kinase [Bradyrhizo... 355 6e-96 gb|EFW80121.1| 2-dehydro-3-deoxygluconokinase [Pseudomonas syrin... 296 4e-78 gb|EFW85016.1| 2-dehydro-3-deoxygluconokinase [Pseudomonas syrin... 296 4e-78 ref|ZP_06460147.1| 2-dehydro-3-deoxygluconokinase [Pseudomonas s... 296 4e-78 >ref|NP_770562.1| 2-dehydro-3-deoxygluconokinase [Bradyrhizobium japonicum USDA 110] dbj|BAC49187.1| 2-dehydro-3-deoxygluconokinase [Bradyrhizobium japonicum USDA 110] Length = 337 Score = 427 bits (1099), Expect = e-118, Method: Compositional matrix adjust. Identities = 231/330 (70%), Positives = 264/330 (80%), Gaps = 12/330 (3%) Query: 1 MTRVASIGECMIELRQAPGGQLGG------------LYSRSFGGDTLNTAVYLSRLGVHV 48 M VA IGECM+ELRQA GG G LYSR FGGDTLNTAVYL+RL V V Sbjct: 8 MASVACIGECMVELRQAQGGHSAGQSAGQSAGQGGGLYSRGFGGDTLNTAVYLARLEVKV 67 Query: 49 DYFTALGDDALSDEMIAGWASEGIGTKHVARSAGKLPGLYLIQTDDRGERRFFHWRDSAA 108 DYFTALGDDALSDEMIA W +E IGT+ V R GKLPGLY+IQTD +GER+FFHWRDSAA Sbjct: 68 DYFTALGDDALSDEMIAAWNAESIGTRRVVRLPGKLPGLYMIQTDAKGERQFFHWRDSAA 127 Query: 109 ARDLMDLPETEDILNSLATYDVVYLSAITLSILREDGRERLLAALKRARLLGTRFAFDTN 168 AR LM LPET+++LNSL +YD+VYLSAITLSI GRERLLAA+KRARLLGTRF FDTN Sbjct: 128 ARQLMSLPETDELLNSLMSYDIVYLSAITLSIYDAPGRERLLAAIKRARLLGTRFVFDTN 187 Query: 169 FRARGWSDLNVARKVFSSAFETADIVLASTEDLAPLYPGETNTALLAGISSPEVVLKLAE 228 FRARGW D +VAR+ F++AF TADIVL STEDL LYPGE+ L+A I SPE+V +LAE Sbjct: 188 FRARGWPDRDVAREAFAAAFATADIVLTSTEDLLALYPGESRDQLMARIPSPELVFRLAE 247 Query: 229 PACIVRSAGGTREVRAEQLTKPVVDTTAAGDSFAAAYLAARLGGAEPEEAARAGHRLAGV 288 P ++R GGT EVRAE +TKPVVDTTAAGDSFAAAY+AARL G+EP EAA+AGHRLA + Sbjct: 248 PVSLLRFPGGTSEVRAEPMTKPVVDTTAAGDSFAAAYIAARLAGSEPVEAAQAGHRLASL 307 Query: 289 VVCYPGAIIPRYAMPPKKALRLPPSRKASQ 318 V+CYPGAIIP YAMPPKK R +R+A++ Sbjct: 308 VICYPGAIIPGYAMPPKKRHRPAATRQATK 337 >ref|ZP_08629183.1| 2-dehydro-3-deoxygluconate kinase [Bradyrhizobiaceae bacterium SG-6C] gb|EGP07676.1| 2-dehydro-3-deoxygluconate kinase [Bradyrhizobiaceae bacterium SG-6C] Length = 306 Score = 355 bits (911), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 185/303 (61%), Positives = 222/303 (73%), Gaps = 5/303 (1%) Query: 1 MTRVASIGECMIELRQAPGGQLGGLYSRSFGGDTLNTAVYLSRLGVHVDYFTALGDDALS 60 MT VA IGECMIEL Q + +R +GGDTLNTAVYL+RLGV VDY TALGDD S Sbjct: 1 MTTVACIGECMIELSQGADH----IVTRGYGGDTLNTAVYLARLGVSVDYVTALGDDPFS 56 Query: 61 DEMIAGWASEGIGTKHVARSAGKLPGLYLIQTDDRGERRFFHWRDSAAARDLMDLPETED 120 +EM+ GW EG+G V R GKLPGLY I+T + GER F++WR+++AAR L+DLPET+D Sbjct: 57 EEMLKGWVGEGVGISRVMRVPGKLPGLYAIRTSEAGERSFYYWRENSAARQLLDLPETDD 116 Query: 121 ILNSLATYDVVYLSAITLSILREDGRERLLAALKRARLLGTRFAFDTNFRARGWSDLNVA 180 +L SLA YDVVYLS ITLS+ DGR RL+ ALK AR G R AFDTNFR +GW DL++A Sbjct: 117 LLASLAGYDVVYLSGITLSLYGADGRRRLIEALKAARKGGARIAFDTNFRMKGWPDLDIA 176 Query: 181 RKVFSSAFETADIVLASTEDLAPLYPGETNTALLAGISSPEVVLKLAEPACIVRSAGGTR 240 R+V+ ADIVLAS +DL PL+ + L+ +++ EVVLKLAEP +VR G Sbjct: 177 RQVYRDMLAVADIVLASVDDLTPLFGSRMHGELIDRMAAGEVVLKLAEPGSVVRYDGVEN 236 Query: 241 EVRAEQLTKPVVDTTAAGDSFAAAYLAARLGGAEPEEAARAGHRLAGVVVCYPGAIIPRY 300 V+AE +++ VVDTTAAGDSFAAAYLAARLGG P EAARAGHRLAG VV + GAIIPR Sbjct: 237 SVKAEPVSR-VVDTTAAGDSFAAAYLAARLGGIAPAEAARAGHRLAGTVVGHRGAIIPRD 295 Query: 301 AMP 303 MP Sbjct: 296 DMP 298 >gb|EFW80121.1| 2-dehydro-3-deoxygluconokinase [Pseudomonas syringae pv. glycinea str. B076] Length = 307 Score = 296 bits (757), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 164/307 (53%), Positives = 199/307 (64%), Gaps = 11/307 (3%) Query: 3 RVASIGECMIELRQAPGGQLGGLYSRSFGGDTLNTAVYLSRL---GVHVDYFTALGDDAL 59 RVA IGECMIEL+Q G L +SFGGDTLNTAVYL+RL VDY TALGDD+ Sbjct: 5 RVALIGECMIELQQHADGSL----RQSFGGDTLNTAVYLARLLGERAKVDYVTALGDDSF 60 Query: 60 SDEMIAGWASEGIGTKHVARSAGKLPGLYLIQTDDRGERRFFHWRDSAAARDLMDLPETE 119 SD M WA EGIG V R G+LPGLY IQTD GERRF +WR+ AA RD P E Sbjct: 61 SDAMCRIWADEGIGLGKVQRLPGRLPGLYCIQTDANGERRFLYWRNEAAVRDCFMTPAAE 120 Query: 120 DILNSLATYDVVYLSAITLSILREDGRERLLAALKRARLLGTRFAFDTNFRARGWSDLNV 179 IL +LA+YDV+Y S ITL++L E GR RLL AL RAR G R AFD N+R R W+ + Sbjct: 121 PILAALASYDVLYFSGITLAVLGEQGRARLLEALDRARQRGVRVAFDNNYRHRLWASVEQ 180 Query: 180 ARKVFSSAFETADIVLASTEDLAPLYPGETNTALLA---GISSPEVVLKLAEPACIVRSA 236 AR+ + + + D+ L + +D LY + LLA G E+V+K +C+V A Sbjct: 181 AREAYQACLQHVDLALLTEDDEQALYGYADSEQLLAAYRGRGIGEIVVKRGAQSCLV-EA 239 Query: 237 GGTREVRAEQLTKPVVDTTAAGDSFAAAYLAARLGGAEPEEAARAGHRLAGVVVCYPGAI 296 GG R A Q + VVDTTAAGDSF+AAYLAARL G P +AA AGHRLA VV+ +PGA+ Sbjct: 240 GGERFDIASQKVEHVVDTTAAGDSFSAAYLAARLMGEHPRQAAEAGHRLASVVIQHPGAL 299 Query: 297 IPRYAMP 303 +P+ MP Sbjct: 300 VPKTVMP 306 >gb|EFW85016.1| 2-dehydro-3-deoxygluconokinase [Pseudomonas syringae pv. glycinea str. race 4] gb|EGH14803.1| 2-dehydro-3-deoxygluconokinase [Pseudomonas syringae pv. glycinea str. race 4] Length = 307 Score = 296 bits (757), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 164/307 (53%), Positives = 199/307 (64%), Gaps = 11/307 (3%) Query: 3 RVASIGECMIELRQAPGGQLGGLYSRSFGGDTLNTAVYLSRL---GVHVDYFTALGDDAL 59 RVA IGECMIEL+Q G L +SFGGDTLNTAVYL+RL VDY TALGDD+ Sbjct: 5 RVALIGECMIELQQHADGSL----RQSFGGDTLNTAVYLARLLGERAKVDYVTALGDDSF 60 Query: 60 SDEMIAGWASEGIGTKHVARSAGKLPGLYLIQTDDRGERRFFHWRDSAAARDLMDLPETE 119 SD M WA EGIG V R G+LPGLY IQTD GERRF +WR+ AA RD P E Sbjct: 61 SDAMCRIWADEGIGLGKVQRLPGRLPGLYCIQTDANGERRFLYWRNEAAVRDCFMTPAAE 120 Query: 120 DILNSLATYDVVYLSAITLSILREDGRERLLAALKRARLLGTRFAFDTNFRARGWSDLNV 179 IL +LA+YDV+Y S ITL++L E GR RLL AL RAR G R AFD N+R R W+ + Sbjct: 121 PILAALASYDVLYFSGITLAVLGEQGRARLLEALDRARQRGVRVAFDNNYRHRLWASVEQ 180 Query: 180 ARKVFSSAFETADIVLASTEDLAPLYPGETNTALLA---GISSPEVVLKLAEPACIVRSA 236 AR+ + + + D+ L + +D LY + LLA G E+V+K +C+V A Sbjct: 181 AREAYQACLQHVDLALLTEDDEQALYGYADSEQLLAAYRGRGIGEIVVKRGAQSCLV-EA 239 Query: 237 GGTREVRAEQLTKPVVDTTAAGDSFAAAYLAARLGGAEPEEAARAGHRLAGVVVCYPGAI 296 GG R A Q + VVDTTAAGDSF+AAYLAARL G P +AA AGHRLA VV+ +PGA+ Sbjct: 240 GGERFDIASQKVEHVVDTTAAGDSFSAAYLAARLMGEHPRQAAEAGHRLASVVIQHPGAL 299 Query: 297 IPRYAMP 303 +P+ MP Sbjct: 300 VPKSVMP 306 >ref|ZP_06460147.1| 2-dehydro-3-deoxygluconokinase [Pseudomonas syringae pv. aesculi str. NCPPB3681] ref|ZP_06480016.1| 2-dehydro-3-deoxygluconokinase [Pseudomonas syringae pv. aesculi str. 2250] gb|EGH02739.1| 2-dehydro-3-deoxygluconokinase [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 307 Score = 296 bits (757), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 164/309 (53%), Positives = 200/309 (64%), Gaps = 11/309 (3%) Query: 1 MTRVASIGECMIELRQAPGGQLGGLYSRSFGGDTLNTAVYLSRL---GVHVDYFTALGDD 57 + RVA IGECMIEL+Q G L +SFGGDTLNTAVYL+RL VDY TALGDD Sbjct: 3 LPRVALIGECMIELQQHADGSL----RQSFGGDTLNTAVYLARLLGERAKVDYVTALGDD 58 Query: 58 ALSDEMIAGWASEGIGTKHVARSAGKLPGLYLIQTDDRGERRFFHWRDSAAARDLMDLPE 117 + SD M WA EGIG V R G+LPGLY IQTD GERRF +WR+ AA RD P Sbjct: 59 SFSDAMCRIWADEGIGLGKVQRLPGRLPGLYCIQTDANGERRFLYWRNEAAVRDCFMTPA 118 Query: 118 TEDILNSLATYDVVYLSAITLSILREDGRERLLAALKRARLLGTRFAFDTNFRARGWSDL 177 E IL +LA+YDV+Y S ITL++L E GR RLL AL RAR G R AFD N+R R W+ + Sbjct: 119 AEPILAALASYDVLYFSGITLAVLGEQGRARLLEALDRARQRGVRVAFDNNYRPRLWASV 178 Query: 178 NVARKVFSSAFETADIVLASTEDLAPLYPGETNTALLA---GISSPEVVLKLAEPACIVR 234 AR+ + + + D+ L + +D LY + LLA G E+V+K +C+V Sbjct: 179 EQAREAYQACLQHVDLALLTEDDEQALYGYADSEQLLAAYRGRGIDEIVVKRGAQSCLV- 237 Query: 235 SAGGTREVRAEQLTKPVVDTTAAGDSFAAAYLAARLGGAEPEEAARAGHRLAGVVVCYPG 294 AGG R A Q + VVDTTAAGDSF+AAYLAARL G P +AA AGHRLA VV+ +PG Sbjct: 238 EAGGERFDIASQKVERVVDTTAAGDSFSAAYLAARLMGEHPRQAAEAGHRLASVVIQHPG 297 Query: 295 AIIPRYAMP 303 A++P+ MP Sbjct: 298 ALVPKSVMP 306