BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0017.p (512 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_570442.1| AMP-dependent synthetase and ligase [Rhodopseud... 806 0.0 ref|YP_001992926.1| AMP-dependent synthetase and ligase [Rhodops... 799 0.0 ref|NP_948803.1| putative long-chain-fatty-acid CoA ligase [Rhod... 795 0.0 ref|YP_781293.1| AMP-dependent synthetase and ligase [Rhodopseud... 793 0.0 ref|YP_485719.1| AMP-dependent synthetase and ligase [Rhodopseud... 790 0.0 >ref|YP_570442.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris BisB5] gb|ABE40541.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris BisB5] Length = 508 Score = 806 bits (2081), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/507 (78%), Positives = 436/507 (85%) Query: 1 LNIAEWLAATARARPDAPALLTGFDLDADYATFARRAASIGAALARDHGIAAGDRIALFA 60 +N+AEWLAA+AR RP APALL G ++ADYATFA RAA++ AALARD+ IA GDR+ALFA Sbjct: 1 MNLAEWLAASARLRPGAPALLRGVTIEADYATFAGRAAALAAALARDYNIAPGDRVALFA 60 Query: 61 SNCTQYLECLYGIWWIGAAAIPINAKLHGREAAWICGNGGAKLAFVSDDTVAALSEARDD 120 +NCTQYLE LYGIWW GA AIPINAKLHGREAAWIC N AKLA + DDT A+L EA DD Sbjct: 61 TNCTQYLEALYGIWWAGAVAIPINAKLHGREAAWICSNAEAKLALICDDTAASLGEAVDD 120 Query: 121 CPAGMTMVSVDGDAYKTMRGGEGPSAPLPRESNDLAWLFYTSGTTGRPKGVMLSHGNLVA 180 P+GM+ +SVD D Y R G G P+ RE NDLAWLFYTSGTTGRPKGVMLSHGNL+A Sbjct: 121 LPSGMSTLSVDSDEYHRARSGGGDKVPVAREDNDLAWLFYTSGTTGRPKGVMLSHGNLIA 180 Query: 181 MSLCYLADVDPATPHDASLYAAPISHGAGLYNFPHVRMGGRHVVPESGGFDPDEVLNLGR 240 MSLCYLADVD +P DA+LYAAPISHGAGLYNF HVR G RHVVP+SGGFDPDEVL+LG+ Sbjct: 181 MSLCYLADVDAVSPDDAALYAAPISHGAGLYNFIHVRFGARHVVPDSGGFDPDEVLDLGK 240 Query: 241 QLDNVVMFAAPTMVRRLVDAAKKRGENGEGLRTIIYGGGPMYTADITDAMATMGQRFVQI 300 QL NV MFAAPTMVRRLVDAA++RGE G+GLRTI+YGGGPMY ADI DA+ MGQRFVQI Sbjct: 241 QLGNVAMFAAPTMVRRLVDAARRRGERGDGLRTIVYGGGPMYLADIRDAIDVMGQRFVQI 300 Query: 301 YGQGESPMTITALSRGWHARSDHPRYLERLASVGLAQSVVTVRITGKDGTPLPAGETGEI 360 YGQGESPMTIT+L R HA DHPRYL+RLASVG+AQS ++VRITG DG LPAGETGEI Sbjct: 301 YGQGESPMTITSLKREHHADVDHPRYLQRLASVGVAQSALSVRITGTDGEVLPAGETGEI 360 Query: 361 EVKGATVMLGYWNNPKANAETLKDGWLRTGDVGRLDADGFLTLSDRSKDVIISGGTNIYP 420 E KG TVMLGYWNNP ANAETLK+GWLRTGDVGRLD DGFLTLSDRSKDVIISGGTNIYP Sbjct: 361 EAKGPTVMLGYWNNPDANAETLKNGWLRTGDVGRLDEDGFLTLSDRSKDVIISGGTNIYP 420 Query: 421 REVEEALLTHPDVSEVSAIGVPDPEWGEIVVACVVLADGATADDGKLDAHCLASIARFKR 480 REVEEALLTHP V EVSAIGV DPEWGE VVACVVLA+G DD LDAHCL +IARFKR Sbjct: 421 REVEEALLTHPAVREVSAIGVADPEWGENVVACVVLAEGTAPDDAALDAHCLNAIARFKR 480 Query: 481 PKRYVYLDALPKNNYGKVLKTALREML 507 PKRYV+L++LPKNNYGKVLKT LR+M+ Sbjct: 481 PKRYVFLESLPKNNYGKVLKTELRKMV 507 >ref|YP_001992926.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris TIE-1] gb|ACF02451.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris TIE-1] Length = 508 Score = 799 bits (2063), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/507 (78%), Positives = 437/507 (86%) Query: 1 LNIAEWLAATARARPDAPALLTGFDLDADYATFARRAASIGAALARDHGIAAGDRIALFA 60 +N+AEWLAA+AR RP APALLTG +DADYATFA RAAS GAALARD+GIA GDR+ALFA Sbjct: 1 MNLAEWLAASARLRPGAPALLTGTTVDADYATFASRAASFGAALARDYGIAPGDRVALFA 60 Query: 61 SNCTQYLECLYGIWWIGAAAIPINAKLHGREAAWICGNGGAKLAFVSDDTVAALSEARDD 120 NCT+YLE LYGIWW GA AIPINAKLHG+E AWIC N A+LA + DDT +EA D Sbjct: 61 HNCTRYLEALYGIWWAGAVAIPINAKLHGKEVAWICSNAEARLALICDDTADTFNEASCD 120 Query: 121 CPAGMTMVSVDGDAYKTMRGGEGPSAPLPRESNDLAWLFYTSGTTGRPKGVMLSHGNLVA 180 P G+ ++++D D + R G G AP+ R+ +DLAWLFYTSGTTGRPKGVMLSHGNLVA Sbjct: 121 LPPGLAVLAIDSDGFDRARSGAGSKAPVARDDDDLAWLFYTSGTTGRPKGVMLSHGNLVA 180 Query: 181 MSLCYLADVDPATPHDASLYAAPISHGAGLYNFPHVRMGGRHVVPESGGFDPDEVLNLGR 240 MSL YLADVD TP DA+LYAAPISHGAGLYN HVR G RHVVPESGGFDPDEVL LG+ Sbjct: 181 MSLSYLADVDAVTPEDAALYAAPISHGAGLYNMIHVRFGARHVVPESGGFDPDEVLGLGK 240 Query: 241 QLDNVVMFAAPTMVRRLVDAAKKRGENGEGLRTIIYGGGPMYTADITDAMATMGQRFVQI 300 QL NV MFAAPTM++RLV+AAK+RGE GEGLRTI+YGGGPMY ADI +A++ MGQRFVQI Sbjct: 241 QLGNVAMFAAPTMIKRLVEAAKRRGEAGEGLRTIVYGGGPMYLADIREALSVMGQRFVQI 300 Query: 301 YGQGESPMTITALSRGWHARSDHPRYLERLASVGLAQSVVTVRITGKDGTPLPAGETGEI 360 YGQGESPMTIT+L R HA DHPRYL+RLASVG AQSVV+VRITG +G LPAGETGEI Sbjct: 301 YGQGESPMTITSLKRALHADVDHPRYLQRLASVGTAQSVVSVRITGANGEVLPAGETGEI 360 Query: 361 EVKGATVMLGYWNNPKANAETLKDGWLRTGDVGRLDADGFLTLSDRSKDVIISGGTNIYP 420 EVKG+TVMLGYWNNP+ANAETLKDGWLRTGDVGRLD DGFLTLSDRSKDVIISGGTNIYP Sbjct: 361 EVKGSTVMLGYWNNPQANAETLKDGWLRTGDVGRLDEDGFLTLSDRSKDVIISGGTNIYP 420 Query: 421 REVEEALLTHPDVSEVSAIGVPDPEWGEIVVACVVLADGATADDGKLDAHCLASIARFKR 480 REVEEALLTHP V EVSAIGV DPEWGE VVACVVLADGA ADD LDAHCLA+IARFKR Sbjct: 421 REVEEALLTHPAVREVSAIGVADPEWGENVVACVVLADGAAADDATLDAHCLATIARFKR 480 Query: 481 PKRYVYLDALPKNNYGKVLKTALREML 507 PKRYVYLDALPKNNYGKVLKT LR+++ Sbjct: 481 PKRYVYLDALPKNNYGKVLKTELRKIV 507 >ref|NP_948803.1| putative long-chain-fatty-acid CoA ligase [Rhodopseudomonas palustris CGA009] emb|CAE28906.1| putative long-chain-fatty-acid CoA ligase [Rhodopseudomonas palustris CGA009] Length = 508 Score = 795 bits (2053), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/507 (77%), Positives = 436/507 (85%) Query: 1 LNIAEWLAATARARPDAPALLTGFDLDADYATFARRAASIGAALARDHGIAAGDRIALFA 60 +N+AEWLAA+AR RP APALLTG +DADYATFA RAAS GAALARD+GIA GDR+ALFA Sbjct: 1 MNLAEWLAASARLRPGAPALLTGTTVDADYATFASRAASFGAALARDYGIAPGDRVALFA 60 Query: 61 SNCTQYLECLYGIWWIGAAAIPINAKLHGREAAWICGNGGAKLAFVSDDTVAALSEARDD 120 NCT+YLE LYGIWW GA AIPINAKLHG+E AWIC N A+LA + DDT +EA D Sbjct: 61 HNCTRYLEALYGIWWAGAVAIPINAKLHGKEVAWICSNAEARLALICDDTADTFNEASYD 120 Query: 121 CPAGMTMVSVDGDAYKTMRGGEGPSAPLPRESNDLAWLFYTSGTTGRPKGVMLSHGNLVA 180 P G+ ++++D D + R G G AP+ R+ +DLAWLFYTSGTTGRPKGVMLSHGNLVA Sbjct: 121 LPPGLAVLAIDSDGFDRARSGAGSKAPVARDDDDLAWLFYTSGTTGRPKGVMLSHGNLVA 180 Query: 181 MSLCYLADVDPATPHDASLYAAPISHGAGLYNFPHVRMGGRHVVPESGGFDPDEVLNLGR 240 MSL YLADVD TP DA+LYAAPISHGAGLYN HVR G RHVVPESGGFDPDEVL+LG+ Sbjct: 181 MSLSYLADVDAVTPEDAALYAAPISHGAGLYNMIHVRFGARHVVPESGGFDPDEVLSLGK 240 Query: 241 QLDNVVMFAAPTMVRRLVDAAKKRGENGEGLRTIIYGGGPMYTADITDAMATMGQRFVQI 300 QL NV MFAAPTM++RLV+AAK+RGE GEGLRTI+YGGGPMY ADI +A++ MGQRFVQI Sbjct: 241 QLGNVAMFAAPTMIKRLVEAAKRRGETGEGLRTIVYGGGPMYLADIREALSVMGQRFVQI 300 Query: 301 YGQGESPMTITALSRGWHARSDHPRYLERLASVGLAQSVVTVRITGKDGTPLPAGETGEI 360 YGQGESPMTIT+L R HA DHPRYL+RLASVG AQSVV+VRITG +G LP GETGEI Sbjct: 301 YGQGESPMTITSLKRALHADVDHPRYLQRLASVGTAQSVVSVRITGANGEVLPPGETGEI 360 Query: 361 EVKGATVMLGYWNNPKANAETLKDGWLRTGDVGRLDADGFLTLSDRSKDVIISGGTNIYP 420 EVKG+TVMLGYWNNP+ANAETLKDGWLRTGDVGRLD DGFLTLSDRSKDVIISGGTNIYP Sbjct: 361 EVKGSTVMLGYWNNPQANAETLKDGWLRTGDVGRLDDDGFLTLSDRSKDVIISGGTNIYP 420 Query: 421 REVEEALLTHPDVSEVSAIGVPDPEWGEIVVACVVLADGATADDGKLDAHCLASIARFKR 480 REVEEALLTHP V EVSAIGV DPEWGE VVACVVL DGA ADD LDAHCLA+IARFKR Sbjct: 421 REVEEALLTHPAVREVSAIGVADPEWGENVVACVVLTDGAAADDATLDAHCLATIARFKR 480 Query: 481 PKRYVYLDALPKNNYGKVLKTALREML 507 PKRYVYLDALPKNNYGKVLKT LR+++ Sbjct: 481 PKRYVYLDALPKNNYGKVLKTELRKIV 507 >ref|YP_781293.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris BisA53] gb|ABJ06313.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris BisA53] Length = 509 Score = 793 bits (2047), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/507 (76%), Positives = 430/507 (84%) Query: 1 LNIAEWLAATARARPDAPALLTGFDLDADYATFARRAASIGAALARDHGIAAGDRIALFA 60 +NIAEWL+++AR P APAL +G L+ADYATFA+RAAS GAAL RDHGIA GDR+ALF Sbjct: 1 MNIAEWLSSSARLHPHAPALFSGTQLEADYATFAQRAASFGAALKRDHGIAPGDRVALFM 60 Query: 61 SNCTQYLECLYGIWWIGAAAIPINAKLHGREAAWICGNGGAKLAFVSDDTVAALSEARDD 120 SNCT YLE +YG+WW GA AIPINAKLHG+EAAWIC N AKLA V DD+ A+L E + + Sbjct: 61 SNCTAYLEAIYGLWWAGAVAIPINAKLHGKEAAWICSNAEAKLALVDDDSAASLREVQAE 120 Query: 121 CPAGMTMVSVDGDAYKTMRGGEGPSAPLPRESNDLAWLFYTSGTTGRPKGVMLSHGNLVA 180 P M ++SVD DAY+ R GEG + P PR++NDLAWLFYTSGTTGRPKGVMLSHGNL A Sbjct: 121 WPPAMQLLSVDSDAYRRARDGEGNARPHPRDANDLAWLFYTSGTTGRPKGVMLSHGNLAA 180 Query: 181 MSLCYLADVDPATPHDASLYAAPISHGAGLYNFPHVRMGGRHVVPESGGFDPDEVLNLGR 240 MSLCYLADVD D +LYAAP+SHGAG+YN+ HVR +HVV SGGFDPDEVL+LGR Sbjct: 181 MSLCYLADVDQVHHDDTALYAAPLSHGAGMYNYIHVRFAAKHVVTASGGFDPDEVLDLGR 240 Query: 241 QLDNVVMFAAPTMVRRLVDAAKKRGENGEGLRTIIYGGGPMYTADITDAMATMGQRFVQI 300 NV MFAAPTMVRRLVDAAK+RGE+GEGLRTI+YGGGPMY ADI DA+ATMGQRFVQI Sbjct: 241 HFGNVAMFAAPTMVRRLVDAAKRRGESGEGLRTIVYGGGPMYLADIRDAIATMGQRFVQI 300 Query: 301 YGQGESPMTITALSRGWHARSDHPRYLERLASVGLAQSVVTVRITGKDGTPLPAGETGEI 360 YGQGESPMTIT+L R WH +DHPRYLERLASVG AQSV+ +RIT +G LPAGETGEI Sbjct: 301 YGQGESPMTITSLKREWHEATDHPRYLERLASVGTAQSVIALRITDAEGRELPAGETGEI 360 Query: 361 EVKGATVMLGYWNNPKANAETLKDGWLRTGDVGRLDADGFLTLSDRSKDVIISGGTNIYP 420 EVKG TVMLGYWNNP+ANA TL+ GWLRTGDVGRLD DGFLTLSDRSKDVIISGG+NIYP Sbjct: 361 EVKGLTVMLGYWNNPEANAATLQHGWLRTGDVGRLDEDGFLTLSDRSKDVIISGGSNIYP 420 Query: 421 REVEEALLTHPDVSEVSAIGVPDPEWGEIVVACVVLADGATADDGKLDAHCLASIARFKR 480 REVEEALLTHP V EVSA+GV DPEWGEIVVACVVL+D A ADD LDAHCLA +ARFKR Sbjct: 421 REVEEALLTHPAVREVSAVGVTDPEWGEIVVACVVLSDDAAADDAALDAHCLAQVARFKR 480 Query: 481 PKRYVYLDALPKNNYGKVLKTALREML 507 PKRYVYLD LPKNNYGKVLKT LREML Sbjct: 481 PKRYVYLDQLPKNNYGKVLKTRLREML 507 >ref|YP_485719.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris HaA2] gb|ABD06808.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris HaA2] Length = 508 Score = 790 bits (2039), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/507 (76%), Positives = 427/507 (84%) Query: 1 LNIAEWLAATARARPDAPALLTGFDLDADYATFARRAASIGAALARDHGIAAGDRIALFA 60 +N++EWLAA+AR RP APALLTG ++ADYATFA+RAAS AAL RD+GI +GDR+ALFA Sbjct: 1 MNLSEWLAASARLRPSAPALLTGTTIEADYATFAQRAASFAAALQRDYGIVSGDRVALFA 60 Query: 61 SNCTQYLECLYGIWWIGAAAIPINAKLHGREAAWICGNGGAKLAFVSDDTVAALSEARDD 120 NCTQYLE LYGIWW GA A+PINAKLHG+EAAWIC N GAKLA + DDT +EA + Sbjct: 61 HNCTQYLEALYGIWWAGAVAVPINAKLHGKEAAWICSNSGAKLALICDDTADTFNEAAGE 120 Query: 121 CPAGMTMVSVDGDAYKTMRGGEGPSAPLPRESNDLAWLFYTSGTTGRPKGVMLSHGNLVA 180 PA M +++D DAY R G+GP+AP RE DLAWLFYTSGTTGRPKGVMLSHGNL+A Sbjct: 121 LPARMATLALDSDAYIRARSGDGPAAPAAREDGDLAWLFYTSGTTGRPKGVMLSHGNLIA 180 Query: 181 MSLCYLADVDPATPHDASLYAAPISHGAGLYNFPHVRMGGRHVVPESGGFDPDEVLNLGR 240 MSLCYLADVD + DA+LYAAPISHGAGLYN H R G RHVVP S GFDPDEVL LG+ Sbjct: 181 MSLCYLADVDTVSSDDAALYAAPISHGAGLYNMIHTRFGARHVVPASKGFDPDEVLTLGK 240 Query: 241 QLDNVVMFAAPTMVRRLVDAAKKRGENGEGLRTIIYGGGPMYTADITDAMATMGQRFVQI 300 QL NV MFAAPTMV+RLV+AA++RGE GEGLRTI+YGGGPMY ADI DA+ MGQRFVQI Sbjct: 241 QLGNVAMFAAPTMVKRLVEAARRRGERGEGLRTIVYGGGPMYLADIRDALDVMGQRFVQI 300 Query: 301 YGQGESPMTITALSRGWHARSDHPRYLERLASVGLAQSVVTVRITGKDGTPLPAGETGEI 360 YGQGESPM IT+L R HA DHPRYL+RLASVG AQS ++VRITG DG LPAGETGEI Sbjct: 301 YGQGESPMAITSLKRELHADVDHPRYLQRLASVGTAQSALSVRITGPDGEVLPAGETGEI 360 Query: 361 EVKGATVMLGYWNNPKANAETLKDGWLRTGDVGRLDADGFLTLSDRSKDVIISGGTNIYP 420 E KG TVMLGYWNN ANAETLKDGWLRTGDVGRLD DGFLTLSDRSKDVIISGGTNIYP Sbjct: 361 EAKGPTVMLGYWNNSDANAETLKDGWLRTGDVGRLDEDGFLTLSDRSKDVIISGGTNIYP 420 Query: 421 REVEEALLTHPDVSEVSAIGVPDPEWGEIVVACVVLADGATADDGKLDAHCLASIARFKR 480 REVEEALLTHP V EVSAIGV DPEWGE VVACVVLADG+ D LDAHCLA+IARFKR Sbjct: 421 REVEEALLTHPAVREVSAIGVADPEWGETVVACVVLADGSEPSDTALDAHCLAAIARFKR 480 Query: 481 PKRYVYLDALPKNNYGKVLKTALREML 507 PKRYVYL+ALPKNNYGKVLKT LR+M+ Sbjct: 481 PKRYVYLEALPKNNYGKVLKTELRKMV 507