BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0011.p (175 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770573.1| hypothetical protein blr3933 [Bradyrhizobium ja... 343 8e-93 ref|YP_001412935.1| carboxymuconolactone decarboxylase [Parvibac... 148 3e-34 ref|YP_002429860.1| carboxymuconolactone decarboxylase [Desulfat... 130 1e-28 ref|YP_994922.1| carboxymuconolactone decarboxylase [Verminephro... 128 3e-28 ref|YP_586775.1| carboxymuconolactone decarboxylase family [Cupr... 119 1e-25 >ref|NP_770573.1| hypothetical protein blr3933 [Bradyrhizobium japonicum USDA 110] dbj|BAC49198.1| blr3933 [Bradyrhizobium japonicum USDA 110] Length = 175 Score = 343 bits (879), Expect = 8e-93, Method: Compositional matrix adjust. Identities = 161/175 (92%), Positives = 170/175 (97%) Query: 1 MARIDYSDPAKASPRTREILDKNRNANIFRMMAHSPSYFEQYCRLGGAIRHKGELDPVVR 60 MARI+YSDP+KAS RTREILDKNR+ANIFRMM+HSPSYFEQYCRLGGAIRHKGELDPVVR Sbjct: 1 MARINYSDPSKASDRTREILDKNRHANIFRMMSHSPSYFEQYCRLGGAIRHKGELDPVVR 60 Query: 61 ELAITRTGILCEAPYEIVAHKRIGKNVGVTDEQNAALEDWQSATCFNEVQRAALAFTDEI 120 ELAITRTGILCEAPYEIVAHKRIGKNVGVTDEQN ALE+WQ+A+CFNEVQRAALAFTDEI Sbjct: 61 ELAITRTGILCEAPYEIVAHKRIGKNVGVTDEQNEALENWQAASCFNEVQRAALAFTDEI 120 Query: 121 VKLKKPTDATFKTIAAKLTPAALIELQLSVGFYIMTSKFLETFEIDLQPVTEVVS 175 VKL KPTDATFK IA+KLTPAAL+ELQLSVGFYIMTSKFLETFEIDLQPVTEVV Sbjct: 121 VKLNKPTDATFKAIASKLTPAALVELQLSVGFYIMTSKFLETFEIDLQPVTEVVG 175 >ref|YP_001412935.1| carboxymuconolactone decarboxylase [Parvibaculum lavamentivorans DS-1] gb|ABS63278.1| Carboxymuconolactone decarboxylase [Parvibaculum lavamentivorans DS-1] Length = 183 Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 72/168 (42%), Positives = 107/168 (63%) Query: 1 MARIDYSDPAKASPRTREILDKNRNANIFRMMAHSPSYFEQYCRLGGAIRHKGELDPVVR 60 MARI Y D AKA+ R +++ +K N NIFRM+ HS + + +LG AI ELDPV+R Sbjct: 1 MARIPYFDTAKATGRAKDVYEKLPNLNIFRMLGHSGDMIDGFIKLGNAILIHSELDPVLR 60 Query: 61 ELAITRTGILCEAPYEIVAHKRIGKNVGVTDEQNAALEDWQSATCFNEVQRAALAFTDEI 120 E+AI R G+L A YE+ H+ I + +G+++E A+ + A F+E QR + FTD++ Sbjct: 61 EIAIVRVGVLKGASYEVYQHEAISRKLGMSEELIKAIHEGPDAKIFDETQREVMRFTDDV 120 Query: 121 VKLKKPTDATFKTIAAKLTPAALIELQLSVGFYIMTSKFLETFEIDLQ 168 VK + +DATF +A KL L EL +++GFY FLETF++D++ Sbjct: 121 VKNTRASDATFNPLAEKLGYKQLQELVITIGFYTTACYFLETFDVDIE 168 >ref|YP_002429860.1| carboxymuconolactone decarboxylase [Desulfatibacillum alkenivorans AK-01] gb|ACL02392.1| Carboxymuconolactone decarboxylase [Desulfatibacillum alkenivorans AK-01] Length = 180 Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 66/174 (37%), Positives = 103/174 (59%), Gaps = 5/174 (2%) Query: 1 MARIDYSDPAKASPRTREILDKNRNA-----NIFRMMAHSPSYFEQYCRLGGAIRHKGEL 55 MARI + +A P +E+ ++ N+F+ +AHSP + RLG AI KG+L Sbjct: 1 MARIPLLEKDQADPIMQELYERTEKGGFPVLNLFKAVAHSPKMGRDFLRLGTAILTKGDL 60 Query: 56 DPVVRELAITRTGILCEAPYEIVAHKRIGKNVGVTDEQNAALEDWQSATCFNEVQRAALA 115 DP++RELAI R G + +A YE H RIGK VGV+DEQ A++DW++A F E ++A L Sbjct: 61 DPILRELAILRIGYVNKAHYEFTQHVRIGKKVGVSDEQIQAVKDWKNAAIFTEEEKAVLD 120 Query: 116 FTDEIVKLKKPTDATFKTIAAKLTPAALIELQLSVGFYIMTSKFLETFEIDLQP 169 +TD++ + ++ F+ I +EL L++ +Y S+ LE+ I+L+P Sbjct: 121 YTDDVNLNIRASEEKFQKIKDLFGDRIAVELTLTIAYYGAVSRILESLAIELEP 174 >ref|YP_994922.1| carboxymuconolactone decarboxylase [Verminephrobacter eiseniae EF01-2] gb|ABM55904.1| Carboxymuconolactone decarboxylase [Verminephrobacter eiseniae EF01-2] Length = 174 Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 64/169 (37%), Positives = 100/169 (59%) Query: 1 MARIDYSDPAKASPRTREILDKNRNANIFRMMAHSPSYFEQYCRLGGAIRHKGELDPVVR 60 MARI Y D ++A ++ N++RM+AH+ E + LG AI + LD +R Sbjct: 1 MARIPYYDLSQAPESYTRLIAARPPLNLYRMLAHAGKTAEGFLALGSAILRENTLDAKLR 60 Query: 61 ELAITRTGILCEAPYEIVAHKRIGKNVGVTDEQNAALEDWQSATCFNEVQRAALAFTDEI 120 E+AI RTGILC A YE+ H+R+ + VG++D++ AL + + + L FTD++ Sbjct: 61 EIAILRTGILCGASYEVHQHRRVARRVGLSDDKIDALGKDADRSALDATETLVLEFTDQV 120 Query: 121 VKLKKPTDATFKTIAAKLTPAALIELQLSVGFYIMTSKFLETFEIDLQP 169 V K DA F+ + A+L + EL L +GFY++ S+FLE FE+D++P Sbjct: 121 VLHVKAPDAMFEALCARLPHGQVAELVLVIGFYMLVSRFLENFEVDIEP 169 >ref|YP_586775.1| carboxymuconolactone decarboxylase family [Cupriavidus metallidurans CH34] gb|ABF11506.1| conserved hypothetical protein; putative carboxymuconolactone decarboxylase family [Cupriavidus metallidurans CH34] Length = 177 Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 60/172 (34%), Positives = 102/172 (59%), Gaps = 4/172 (2%) Query: 1 MARIDYSDPAKASPRTREILDKNRNANIFRMMAHSPSYFEQYCRLGGAIRHKGELDPVVR 60 MAR+ Y D +ASP ++++ N++RM+ H + E + LGGAI + ELDP +R Sbjct: 1 MARLPYFDLEQASPTYKKMIGARPPLNLYRMLPHGGAVGEGFLALGGAILRESELDPTLR 60 Query: 61 ELAITRTGILCEAPYEIVAHKRIGKNVGVTDEQNAALEDWQSA----TCFNEVQRAALAF 116 EL I R G L A YEI H+R+ + GV + + ++ D +A F++++ + F Sbjct: 61 ELVILRVGALSGASYEIHQHRRVARKAGVPENKIESVLDHGAAEPDPNVFSDLEIRLIRF 120 Query: 117 TDEIVKLKKPTDATFKTIAAKLTPAALIELQLSVGFYIMTSKFLETFEIDLQ 168 TD +V+ K ++ +A+ L+ LIE+ +++GFY++ S+FLE EID++ Sbjct: 121 TDAVVRDVKAPAPLYEAVASVLSNKQLIEVLMTIGFYMLVSRFLENLEIDIE 172