BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0005.p (171 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001239568.1| IclR family transcriptional regulator [Brady... 238 3e-61 ref|NP_770579.1| transcriptional regulator [Bradyrhizobium japon... 236 7e-61 ref|YP_001205164.1| IclR family transcriptional regulator [Brady... 223 5e-57 ref|YP_532959.1| IclR family transcriptional regulator [Rhodopse... 195 2e-48 ref|YP_001992917.1| IclR family transcriptional regulator [Rhodo... 182 1e-44 >ref|YP_001239568.1| IclR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gb|ABQ35662.1| transcriptional regulator, IclR family [Bradyrhizobium sp. BTAi1] Length = 328 Score = 238 bits (606), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 115/173 (66%), Positives = 137/173 (79%), Gaps = 3/173 (1%) Query: 1 MATTAAGHAYTDALDPAVGDALIAEMEGELPESAKMLTPRIEANRRHLQEHGYVVACGLW 60 MA+TAAGHAY AL+P VGDAL+ EME ELP++A++L PR+E NR+ L+EHGYVVACGLW Sbjct: 155 MASTAAGHAYVAALEPEVGDALLTEMERELPDAARLLRPRLEHNRQFLKEHGYVVACGLW 214 Query: 61 SPHINGVAVPLWSPQYQTYVVTTIGLLSAMYDEARLHREVAPQMVELAAALGSLLEGADG 120 SPHINGVA+PLWSPQYQTYVV TIGLLSAMYDE RLH EVA M+EL ++ +LL+GA+ Sbjct: 215 SPHINGVALPLWSPQYQTYVVLTIGLLSAMYDEQRLHDEVAQPMLELGRSVAALLQGAEA 274 Query: 121 DIFSNRIERKSLPVTA---HNNNKILKTGAVNELEAGTRRPRPPRSVRAGDGR 170 D+F++R+ERK LPVT H N I G NEL AG R P RS+RAGDGR Sbjct: 275 DVFNSRMERKPLPVTTKTNHKNKTITGAGGTNELAAGARGTGPARSLRAGDGR 327 >ref|NP_770579.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC49204.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 328 Score = 236 bits (603), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 111/156 (71%), Positives = 130/156 (83%) Query: 16 PAVGDALIAEMEGELPESAKMLTPRIEANRRHLQEHGYVVACGLWSPHINGVAVPLWSPQ 75 P VGDA IA+ME E PE+AK+L PRIEANR+ L+E GYV ACGLWSPHING+AVP+WSPQ Sbjct: 173 PEVGDAFIADMEREAPEAAKILKPRIEANRQSLRERGYVTACGLWSPHINGLAVPIWSPQ 232 Query: 76 YQTYVVTTIGLLSAMYDEARLHREVAPQMVELAAALGSLLEGADGDIFSNRIERKSLPVT 135 YQT+VV TIGLLSAMYDE RLH EVAP M+ L +LGSLLEGA+GD+F+NRI RK + + Sbjct: 233 YQTFVVITIGLLSAMYDEQRLHAEVAPLMLALGRSLGSLLEGAEGDVFNNRIPRKPVAMA 292 Query: 136 AHNNNKILKTGAVNELEAGTRRPRPPRSVRAGDGRR 171 HNNNK + + VN+LEAGTRR RP RS+RAGDGRR Sbjct: 293 VHNNNKPINSEGVNDLEAGTRRARPARSLRAGDGRR 328 >ref|YP_001205164.1| IclR family transcriptional regulator [Bradyrhizobium sp. ORS 278] emb|CAL76929.1| putative transcriptional regulatory protein, IclR family [Bradyrhizobium sp. ORS 278] Length = 327 Score = 223 bits (569), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 111/172 (64%), Positives = 134/172 (77%), Gaps = 2/172 (1%) Query: 1 MATTAAGHAYTDALDPAVGDALIAEMEGELPESAKMLTPRIEANRRHLQEHGYVVACGLW 60 MA+TAAGHAY AL+P VGDAL+AEME E+P++A +L PR+E NR+ L+EHGYVVACGLW Sbjct: 155 MASTAAGHAYVAALEPEVGDALLAEMEREMPDAANLLRPRLEHNRQFLKEHGYVVACGLW 214 Query: 61 SPHINGVAVPLWSPQYQTYVVTTIGLLSAMYDEARLHREVAPQMVELAAALGSLLEGADG 120 SPHING+A+P+WSPQYQT VV TIGLLSAMYDE RLH EVA M EL + +LL+GA+ Sbjct: 215 SPHINGLALPVWSPQYQTNVVLTIGLLSAMYDEQRLHDEVAQPMRELGRNISALLQGAEA 274 Query: 121 DIFSNRIERKSLPVTAHNNNKILKTGA--VNELEAGTRRPRPPRSVRAGDGR 170 D+F++R+ERK L VT N+K TGA NEL AG R P R +RAGDGR Sbjct: 275 DVFNSRMERKPLQVTTKTNHKKTITGAGGTNELAAGARGIGPARGLRAGDGR 326 >ref|YP_532959.1| IclR family transcriptional regulator [Rhodopseudomonas palustris BisB18] gb|ABD88640.1| transcriptional regulator, IclR family [Rhodopseudomonas palustris BisB18] Length = 323 Score = 195 bits (496), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 98/171 (57%), Positives = 121/171 (70%), Gaps = 3/171 (1%) Query: 1 MATTAAGHAYTDALDPAVGDALIAEMEGELPESAKMLTPRIEANRRHLQEHGYVVACGLW 60 M TAAGHAYT ALD V AL+AEME E+P A++L R+E NR L+E GYV ACGLW Sbjct: 155 MTRTAAGHAYTAALDEDVASALLAEMEREIPHDAQVLRARLEGNRAMLRERGYVTACGLW 214 Query: 61 SPHINGVAVPLWSPQYQTYVVTTIGLLSAMYDEARLHREVAPQMVELAAALGSLLEGADG 120 SPHING+A P+WSPQYQT VV TIGLLSAMYDE R+H EV P++ +LAA++ +L++ A+G Sbjct: 215 SPHINGIATPMWSPQYQTNVVVTIGLLSAMYDEQRMHDEVGPELKKLAASISTLIQNAEG 274 Query: 121 DIFSNRIERKSLPVTAHNNNKILKTGAVNELEAGTRRPRPPRSVRAGDGRR 171 ++ N E P H K + TG + LEAG RR PPRS+RA DG R Sbjct: 275 GLYDNGSELTLRPAMPH---KTVTTGEMYGLEAGARRVGPPRSLRAADGGR 322 >ref|YP_001992917.1| IclR family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gb|ACF02442.1| transcriptional regulator, IclR family [Rhodopseudomonas palustris TIE-1] Length = 321 Score = 182 bits (463), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 90/170 (52%), Positives = 120/170 (70%), Gaps = 7/170 (4%) Query: 1 MATTAAGHAYTDALDPAVGDALIAEMEGELPESAKMLTPRIEANRRHLQEHGYVVACGLW 60 ++ TAAGHAY +LD V AL+AE++ E P A +L+ RIE +R L+E GYVV+CGL+ Sbjct: 151 ISRTAAGHAYAASLDDNVAAALVAEIQREAPADAALLSERIETDRAMLRERGYVVSCGLF 210 Query: 61 SPHINGVAVPLWSPQYQTYVVTTIGLLSAMYDEARLHREVAPQMVELAAALGSLLEGADG 120 SPHING+AVP+WSPQYQTYV+ TIG+L+AMYDE RLH EVAP +++LA + L++ ADG Sbjct: 211 SPHINGIAVPIWSPQYQTYVMVTIGVLAAMYDEQRLHDEVAPMLLKLAGTIEPLVQNADG 270 Query: 121 DIFSNRIERKSLPVTAHNNNKILKTGAVNELEAGTRRPRPPRSVRAGDGR 170 + + R +NN K ++ +NELEAG RR P R +RA DGR Sbjct: 271 GLVAVR-------PAGNNNKKTIRPEGMNELEAGARRAGPARELRAADGR 313