BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0017.p         (102 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_782911.1| putative transposase [Rhodopseudomonas palustri...   143   9e-33
ref|YP_531649.1| putative transposase [Rhodopseudomonas palustri...   142   2e-32
ref|YP_004109572.1| transposase IS4 family protein [Rhodopseudom...   139   2e-31
ref|ZP_08072162.1| transposase IS4 family protein [Methylocystis...   121   3e-26
ref|NP_774867.1| hypothetical protein bll8227 [Bradyrhizobium ja...   121   4e-26

>ref|YP_782911.1| putative transposase [Rhodopseudomonas palustris BisA53]
 gb|ABJ07931.1| putative transposase [Rhodopseudomonas palustris BisA53]
          Length = 444

 Score =  143 bits (360), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 63/89 (70%), Positives = 75/89 (84%)

Query: 1  MSKPRDDRQKDLLLPALDQIIDMGHPLVRLAALIDWKFLDDRFGSVCQTGSGQPGVPTRL 60
          MSKPRDDRQ ++  PAL+QIID+GHPLVRLAA +DW FL  RFG+V + G GQP +PTRL
Sbjct: 1  MSKPRDDRQAEMFRPALEQIIDLGHPLVRLAAELDWAFLKTRFGAVYRAGPGQPPLPTRL 60

Query: 61 VAGLFILKHMRNLSDEVLCARWIENPYYR 89
          +AGL ILKHM NLSDE LCARW+ENPY++
Sbjct: 61 IAGLLILKHMHNLSDEALCARWVENPYFQ 89


>ref|YP_531649.1| putative transposase [Rhodopseudomonas palustris BisB18]
 gb|ABD87330.1| putative transposase [Rhodopseudomonas palustris BisB18]
          Length = 448

 Score =  142 bits (358), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 64/89 (71%), Positives = 76/89 (85%)

Query: 1  MSKPRDDRQKDLLLPALDQIIDMGHPLVRLAALIDWKFLDDRFGSVCQTGSGQPGVPTRL 60
          MSKPRDDRQ ++  PAL++IID+GHPLVRLAA IDW FL  RFG+V + G GQP +PTRL
Sbjct: 5  MSKPRDDRQAEMFRPALEEIIDLGHPLVRLAAEIDWDFLATRFGAVYRPGPGQPPLPTRL 64

Query: 61 VAGLFILKHMRNLSDEVLCARWIENPYYR 89
          +AGL ILKHM NLSDEVLCARW+ENPY++
Sbjct: 65 IAGLLILKHMHNLSDEVLCARWVENPYFQ 93


>ref|YP_004109572.1| transposase IS4 family protein [Rhodopseudomonas palustris DX-1]
 gb|ADU44839.1| transposase IS4 family protein [Rhodopseudomonas palustris DX-1]
          Length = 444

 Score =  139 bits (349), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 63/89 (70%), Positives = 76/89 (85%)

Query: 1  MSKPRDDRQKDLLLPALDQIIDMGHPLVRLAALIDWKFLDDRFGSVCQTGSGQPGVPTRL 60
          MSKPRDDRQ +L  PAL+QIID+ HPLVRLAA IDW F++ RFG+  +TG GQP +PTRL
Sbjct: 1  MSKPRDDRQVELFRPALEQIIDLTHPLVRLAAEIDWAFVERRFGAGYRTGPGQPPLPTRL 60

Query: 61 VAGLFILKHMRNLSDEVLCARWIENPYYR 89
          +AGL ILKHM +LSDEVLCARW+ENPY++
Sbjct: 61 IAGLLILKHMHDLSDEVLCARWVENPYFQ 89


>ref|ZP_08072162.1| transposase IS4 family protein [Methylocystis sp. ATCC 49242]
 gb|EFY00365.1| transposase IS4 family protein [Methylocystis sp. ATCC 49242]
          Length = 457

 Score =  121 bits (304), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 56/86 (65%), Positives = 66/86 (76%)

Query: 5  RDDRQKDLLLPALDQIIDMGHPLVRLAALIDWKFLDDRFGSVCQTGSGQPGVPTRLVAGL 64
          RD  Q DL    LDQI+D  HPLV+LAA IDW FL+ RFG+V   G GQP +PTRL+AGL
Sbjct: 7  RDSGQSDLFRARLDQIVDRAHPLVKLAAAIDWGFLEQRFGAVYSDGPGQPPLPTRLMAGL 66

Query: 65 FILKHMRNLSDEVLCARWIENPYYRV 90
           ILKHM +LSDEVLC RW+ENPYY++
Sbjct: 67 AILKHMHDLSDEVLCDRWLENPYYQL 92


>ref|NP_774867.1| hypothetical protein bll8227 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC53492.1| bll8227 [Bradyrhizobium japonicum USDA 110]
          Length = 105

 Score =  121 bits (303), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 59/84 (70%), Positives = 67/84 (79%)

Query: 1  MSKPRDDRQKDLLLPALDQIIDMGHPLVRLAALIDWKFLDDRFGSVCQTGSGQPGVPTRL 60
          +S+PRDDRQ DL   +LD II++ HPLVRLAA IDW FL  RF SVC+TG GQP +PTRL
Sbjct: 15 VSQPRDDRQDDLFRASLDAIINLRHPLVRLAAEIDWDFLAKRFSSVCRTGPGQPPLPTRL 74

Query: 61 VAGLFILKHMRNLSDEVLCARWIE 84
          VAGLFILKHM NLSDE LC R +E
Sbjct: 75 VAGLFILKHMHNLSDEALCGRCLE 98