BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0016.p (239 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_768692.1| maturase; reverse transcriptase [Bradyrhizobium... 446 e-123 ref|YP_002015331.1| RNA-directed DNA polymerase [Prosthecochlori... 354 6e-96 ref|NP_928428.1| hypothetical protein plu1111 [Photorhabdus lumi... 337 6e-91 ref|YP_002541754.1| reverse transcriptase/maturase protein [Agro... 333 1e-89 ref|YP_003712053.1| reverse transcriptase [Xenorhabdus nematophi... 332 2e-89 >ref|NP_768692.1| maturase; reverse transcriptase [Bradyrhizobium japonicum USDA 110] gb|AAG61023.1|AF322013_142 ID776 [Bradyrhizobium japonicum] dbj|BAC47317.1| blr2052 [Bradyrhizobium japonicum USDA 110] Length = 414 Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust. Identities = 217/228 (95%), Positives = 220/228 (96%), Gaps = 1/228 (0%) Query: 1 VNSGKPLPITKRMVWEAYKLVKKKGKAAGVDGQSLEDFAGDLENHLYRLWNRLASGSYFP 60 + SGKPLPITKRMVWEAYKLVKK GKAAGVDGQSLEDFAGDLENH YRLWNRL SGSYFP Sbjct: 1 MKSGKPLPITKRMVWEAYKLVKK-GKAAGVDGQSLEDFAGDLENHRYRLWNRLVSGSYFP 59 Query: 61 PPVRRVEIPKAGGGVRPLGIPTVADRIAQMVVKRCLEPELDGEFDPDSYGYRPGKSAHQA 120 PPVRRVEIPKAGGG+RPLGIPTVADRIAQMVVKRCLEP LDGEFDPDSYGYRPGKSAHQA Sbjct: 60 PPVRRVEIPKAGGGIRPLGIPTVADRIAQMVVKRCLEPVLDGEFDPDSYGYRPGKSAHQA 119 Query: 121 IEQARKRCWQHDWVVDLDIKSFFDTIDHELLMRAVYRHTKADWIRLYIERWLKAPVEMPD 180 IEQARKRCWQHDWVVDLD KSFFDTIDHELLMRAVYRHTKADWIRLYIERWLKAPVEMPD Sbjct: 120 IEQARKRCWQHDWVVDLDNKSFFDTIDHELLMRAVYRHTKADWIRLYIERWLKAPVEMPD 179 Query: 181 GSVQARTTGTPQGGVVSPILANLFLHYVFDVWMKGSYPHIPFERYADD 228 GSV+ARTTG QGGVVSPILANLFLHYVFDVWMKGSYPHIPFERYADD Sbjct: 180 GSVRARTTGRSQGGVVSPILANLFLHYVFDVWMKGSYPHIPFERYADD 227 >ref|YP_002015331.1| RNA-directed DNA polymerase [Prosthecochloris aestuarii DSM 271] gb|ACF45684.1| RNA-directed DNA polymerase (Reverse transcriptase) [Prosthecochloris aestuarii DSM 271] Length = 411 Score = 354 bits (909), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 161/225 (71%), Positives = 190/225 (84%) Query: 5 KPLPITKRMVWEAYKLVKKKGKAAGVDGQSLEDFAGDLENHLYRLWNRLASGSYFPPPVR 64 KP PITKR VWEAYK VK AGVDGQS+ +F +EN+LY+LWNRLASGSY PPPV+ Sbjct: 5 KPFPITKRQVWEAYKRVKANQGGAGVDGQSIAEFDEAMENNLYKLWNRLASGSYMPPPVK 64 Query: 65 RVEIPKAGGGVRPLGIPTVADRIAQMVVKRCLEPELDGEFDPDSYGYRPGKSAHQAIEQA 124 RVEIPKA GG+RPLG+PTVADRIAQ VVK+ LEPE++ F PDSYGYRPGKSAHQA+ +A Sbjct: 65 RVEIPKADGGLRPLGVPTVADRIAQTVVKQVLEPEMERHFHPDSYGYRPGKSAHQAVGEA 124 Query: 125 RKRCWQHDWVVDLDIKSFFDTIDHELLMRAVYRHTKADWIRLYIERWLKAPVEMPDGSVQ 184 RKRCW++DWVVDLDI+ FFD IDHELLMRA++ HT+ W+ LYIERWLKAPV++PDG++Q Sbjct: 125 RKRCWRNDWVVDLDIRGFFDAIDHELLMRALHSHTQERWVLLYIERWLKAPVQLPDGTLQ 184 Query: 185 ARTTGTPQGGVVSPILANLFLHYVFDVWMKGSYPHIPFERYADDG 229 R GTPQGGV+SP+LANL LHY FD WM+ +PH+ FERYADDG Sbjct: 185 KRGAGTPQGGVISPLLANLMLHYTFDAWMQRMFPHVSFERYADDG 229 >ref|NP_928428.1| hypothetical protein plu1111 [Photorhabdus luminescens subsp. laumondii TTO1] emb|CAE13405.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 469 Score = 337 bits (865), Expect = 6e-91, Method: Compositional matrix adjust. Identities = 156/228 (68%), Positives = 184/228 (80%) Query: 1 VNSGKPLPITKRMVWEAYKLVKKKGKAAGVDGQSLEDFAGDLENHLYRLWNRLASGSYFP 60 V S KP P++KR VW+AYK VK AAG+DGQ+L F ++ ++LY+LWNRLASGSY P Sbjct: 51 VKSAKPFPVSKRQVWDAYKRVKANRGAAGIDGQTLAGFDENVADNLYKLWNRLASGSYMP 110 Query: 61 PPVRRVEIPKAGGGVRPLGIPTVADRIAQMVVKRCLEPELDGEFDPDSYGYRPGKSAHQA 120 VRRVEIPKA GGVRPLGIP V+DRIAQMVVK+ LEP L+ F DSYGYRPGKSAHQA Sbjct: 111 QAVRRVEIPKADGGVRPLGIPAVSDRIAQMVVKQVLEPVLEPLFHADSYGYRPGKSAHQA 170 Query: 121 IEQARKRCWQHDWVVDLDIKSFFDTIDHELLMRAVYRHTKADWIRLYIERWLKAPVEMPD 180 I QAR RCWQ DWVV++DIK FFD IDH LL++AV HT+ W+ +YIERWLKAPV+MPD Sbjct: 171 IAQARTRCWQFDWVVEIDIKGFFDNIDHALLLKAVRHHTQERWLVMYIERWLKAPVQMPD 230 Query: 181 GSVQARTTGTPQGGVVSPILANLFLHYVFDVWMKGSYPHIPFERYADD 228 G VQ R GTPQGGV+SP+++NLFLHY FD+WMK +P +PFERYADD Sbjct: 231 GRVQVRNRGTPQGGVISPLISNLFLHYAFDMWMKRQFPGVPFERYADD 278 >ref|YP_002541754.1| reverse transcriptase/maturase protein [Agrobacterium radiobacter K84] gb|ACM30157.1| reverse transcriptase/maturase protein [Agrobacterium radiobacter K84] Length = 419 Score = 333 bits (854), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 156/229 (68%), Positives = 189/229 (82%) Query: 1 VNSGKPLPITKRMVWEAYKLVKKKGKAAGVDGQSLEDFAGDLENHLYRLWNRLASGSYFP 60 ++ KP I KR VWEAYK V+ AAG+DGQ++ DF DL N+LY+LWNRLASGSYFP Sbjct: 1 MDRAKPYTIPKREVWEAYKRVRANQGAAGIDGQTIADFEADLRNNLYKLWNRLASGSYFP 60 Query: 61 PPVRRVEIPKAGGGVRPLGIPTVADRIAQMVVKRCLEPELDGEFDPDSYGYRPGKSAHQA 120 PPVRRV+IPK+ G RPLGIPTVADR+AQMVVKR LEP ++ EF PDSYGYRPGKSA A Sbjct: 61 PPVRRVDIPKSDGKTRPLGIPTVADRVAQMVVKRHLEPVVEPEFHPDSYGYRPGKSALDA 120 Query: 121 IEQARKRCWQHDWVVDLDIKSFFDTIDHELLMRAVYRHTKADWIRLYIERWLKAPVEMPD 180 I AR+RCW+++WV+DLDIK+FFD+I+ +LLMRAV +HT W+ LYIERWLKAPV+MPD Sbjct: 121 ISVARQRCWRYNWVLDLDIKAFFDSIEPDLLMRAVRKHTDCPWVLLYIERWLKAPVQMPD 180 Query: 181 GSVQARTTGTPQGGVVSPILANLFLHYVFDVWMKGSYPHIPFERYADDG 229 G++ AR GTPQGGV+SP+LA+LFLHY FD+WM ++P IPFERYADD Sbjct: 181 GNLVARERGTPQGGVISPLLASLFLHYAFDMWMCRNFPDIPFERYADDA 229 >ref|YP_003712053.1| reverse transcriptase [Xenorhabdus nematophila ATCC 19061] emb|CBJ89869.1| Putative reverse transcriptase [Xenorhabdus nematophila ATCC 19061] Length = 444 Score = 332 bits (852), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 154/228 (67%), Positives = 182/228 (79%) Query: 1 VNSGKPLPITKRMVWEAYKLVKKKGKAAGVDGQSLEDFAGDLENHLYRLWNRLASGSYFP 60 V S KP P++KR VWEAYK VK AAG+DGQ+L F ++ ++LY+LWNRLASGSY P Sbjct: 51 VKSAKPFPVSKRQVWEAYKRVKANRGAAGIDGQTLAGFDENVADNLYKLWNRLASGSYMP 110 Query: 61 PPVRRVEIPKAGGGVRPLGIPTVADRIAQMVVKRCLEPELDGEFDPDSYGYRPGKSAHQA 120 VRRVEIPKA GGVRPLGIP V+DRIAQMVVK+ LEP L+ F DSYGYRPGKSAHQA Sbjct: 111 QAVRRVEIPKADGGVRPLGIPAVSDRIAQMVVKQVLEPVLEPLFHADSYGYRPGKSAHQA 170 Query: 121 IEQARKRCWQHDWVVDLDIKSFFDTIDHELLMRAVYRHTKADWIRLYIERWLKAPVEMPD 180 I QAR RCW+ DWVV++DIK FFD I H LL++AV HT+ W+ +YIE WLKAPV+MPD Sbjct: 171 IAQARTRCWKFDWVVEIDIKGFFDNIAHALLLKAVRHHTQERWLVMYIELWLKAPVQMPD 230 Query: 181 GSVQARTTGTPQGGVVSPILANLFLHYVFDVWMKGSYPHIPFERYADD 228 G VQ R GTPQGGV+SP+++NLFLHY FD+WMK +P +PFERYADD Sbjct: 231 GRVQVRNRGTPQGGVISPLISNLFLHYAFDMWMKRQFPGVPFERYADD 278