BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0014.p         (156 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_531649.1| putative transposase [Rhodopseudomonas palustri...   172   1e-41
ref|YP_004109572.1| transposase IS4 family protein [Rhodopseudom...   172   2e-41
ref|YP_782911.1| putative transposase [Rhodopseudomonas palustri...   168   3e-40
ref|ZP_08072162.1| transposase IS4 family protein [Methylocystis...   141   3e-32
ref|YP_577996.1| transposase, IS4 [Nitrobacter hamburgensis X14]...   138   3e-31

>ref|YP_531649.1| putative transposase [Rhodopseudomonas palustris BisB18]
 gb|ABD87330.1| putative transposase [Rhodopseudomonas palustris BisB18]
          Length = 448

 Score =  172 bits (437), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 91/146 (62%), Positives = 103/146 (70%), Gaps = 23/146 (15%)

Query: 6   PTRQYFCGELSFCHRLPFDRSSMTRWRQRLGEEQLVALIQESLSVAHKAGAVGPKDLERW 65
           P  Q+FCGE+ F H LPFDRSS++RWR+RLGEEQL AL+QESLSVA              
Sbjct: 90  PYFQFFCGEVVFRHDLPFDRSSLSRWRKRLGEEQLAALLQESLSVA-------------- 135

Query: 66  SSXESLSVAHKTGAIGPQDLERVVVGTTVQPKAVAHPTDARLMHRAITKLVGLAKRNRVP 125
                    H+ GA+  +DL+RVVV TTVQ KA+AHPTDARL HRAI  LV LAKR  V 
Sbjct: 136 ---------HRAGALQTKDLQRVVVDTTVQEKAIAHPTDARLTHRAIQNLVDLAKREGVA 186

Query: 126 LRQSYLRLAKRAAIMVGRYTHGHQXR 151
           LRQSYLRLAKRAAIMVGRYTH HQ +
Sbjct: 187 LRQSYLRLAKRAAIMVGRYTHAHQFK 212


>ref|YP_004109572.1| transposase IS4 family protein [Rhodopseudomonas palustris DX-1]
 gb|ADU44839.1| transposase IS4 family protein [Rhodopseudomonas palustris DX-1]
          Length = 444

 Score =  172 bits (435), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 91/146 (62%), Positives = 104/146 (71%), Gaps = 23/146 (15%)

Query: 6   PTRQYFCGELSFCHRLPFDRSSMTRWRQRLGEEQLVALIQESLSVAHKAGAVGPKDLERW 65
           P  Q+FCGE+ F H LPFDRSS++RWR+RLG+EQL AL+QESLSVA              
Sbjct: 86  PYFQFFCGEVVFRHDLPFDRSSLSRWRKRLGDEQLAALLQESLSVA-------------- 131

Query: 66  SSXESLSVAHKTGAIGPQDLERVVVGTTVQPKAVAHPTDARLMHRAITKLVGLAKRNRVP 125
                    H++GA+  +DLERVVV TTVQ KAV HPTDARL HRAI KLV LAKR  V 
Sbjct: 132 ---------HRSGALQTKDLERVVVDTTVQEKAVTHPTDARLNHRAIEKLVDLAKREGVA 182

Query: 126 LRQSYLRLAKRAAIMVGRYTHGHQXR 151
           LRQSYLR+AKRAAIMVGRYTH HQ +
Sbjct: 183 LRQSYLRVAKRAAIMVGRYTHAHQFK 208


>ref|YP_782911.1| putative transposase [Rhodopseudomonas palustris BisA53]
 gb|ABJ07931.1| putative transposase [Rhodopseudomonas palustris BisA53]
          Length = 444

 Score =  168 bits (425), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 88/146 (60%), Positives = 103/146 (70%), Gaps = 23/146 (15%)

Query: 6   PTRQYFCGELSFCHRLPFDRSSMTRWRQRLGEEQLVALIQESLSVAHKAGAVGPKDLERW 65
           P  Q+FCGE+ F H LPFDRSS++RWR+RL EEQL AL+QESL++AH+            
Sbjct: 86  PYFQFFCGEVVFRHELPFDRSSLSRWRKRLCEEQLAALLQESLALAHR------------ 133

Query: 66  SSXESLSVAHKTGAIGPQDLERVVVGTTVQPKAVAHPTDARLMHRAITKLVGLAKRNRVP 125
                      +GA+  +DL+RVVV TTVQ KA+AHPTDARL HR I KLV LAKR  V 
Sbjct: 134 -----------SGALQTKDLQRVVVDTTVQEKAIAHPTDARLNHRTIEKLVDLAKRQGVA 182

Query: 126 LRQSYLRLAKRAAIMVGRYTHGHQXR 151
           LRQSYLRLAKRAAIMVGRYTH HQ +
Sbjct: 183 LRQSYLRLAKRAAIMVGRYTHAHQFK 208


>ref|ZP_08072162.1| transposase IS4 family protein [Methylocystis sp. ATCC 49242]
 gb|EFY00365.1| transposase IS4 family protein [Methylocystis sp. ATCC 49242]
          Length = 457

 Score =  141 bits (356), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 79/149 (53%), Positives = 92/149 (61%), Gaps = 23/149 (15%)

Query: 3   LPRPTRQYFCGELSFCHRLPFDRSSMTRWRQRLGEEQLVALIQESLSVAHKAGAVGPKDL 62
           L  P  Q FCGE  F HRLPFDRSS+TRWRQR+GEE+L AL+QESLSVA +         
Sbjct: 85  LENPYYQLFCGEEFFAHRLPFDRSSITRWRQRMGEEKLAALLQESLSVATR--------- 135

Query: 63  ERWSSXESLSVAHKTGAIGPQDLERVVVGTTVQPKAVAHPTDARLMHRAITKLVGLAKRN 122
                         TGA  P D  +V+V TTVQ KAVA PTDA+LMHRA  +LV LAK++
Sbjct: 136 --------------TGAAKPADFTKVIVDTTVQEKAVAFPTDAKLMHRARERLVRLAKKH 181

Query: 123 RVPLRQSYLRLAKRAAIMVGRYTHGHQXR 151
            V LRQSY R+ K A I   RY H  Q +
Sbjct: 182 GVALRQSYERIGKYALIDHQRYKHAKQHK 210


>ref|YP_577996.1| transposase, IS4 [Nitrobacter hamburgensis X14]
 gb|ABE63536.1| transposase, IS4 family [Nitrobacter hamburgensis X14]
          Length = 451

 Score =  138 bits (347), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 76/146 (52%), Positives = 89/146 (60%), Gaps = 23/146 (15%)

Query: 6   PTRQYFCGELSFCHRLPFDRSSMTRWRQRLGEEQLVALIQESLSVAHKAGAVGPKDLERW 65
           P  Q FCGE  F H +PFDRSSMTRWRQR+GE+++VALIQESL+VA +            
Sbjct: 88  PYYQLFCGEAFFRHDVPFDRSSMTRWRQRMGEDKIVALIQESLNVATR------------ 135

Query: 66  SSXESLSVAHKTGAIGPQDLERVVVGTTVQPKAVAHPTDARLMHRAITKLVGLAKRNRVP 125
                       GA  P D   ++V TTVQPKAVA PTDA+LMHRA  KL  LAK++ V 
Sbjct: 136 -----------VGAAKPSDFTSIIVDTTVQPKAVAFPTDAKLMHRAREKLARLAKKHGVV 184

Query: 126 LRQSYLRLAKRAAIMVGRYTHGHQXR 151
           LRQSY R+ K A I   RY H  Q R
Sbjct: 185 LRQSYERVGKHALIAHQRYAHAKQFR 210