BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0012.p (449 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_768647.2| coproporphyrinogen III oxidase [Bradyrhizobium ... 745 0.0 dbj|BAC47272.1| coproporphyrinogen III dehydrogenase [Bradyrhizo... 697 0.0 ref|NP_106909.1| coproporphyrinogen III oxidase [Mesorhizobium l... 641 0.0 ref|YP_004144778.1| oxygen-independent coproporphyrinogen III ox... 620 e-175 ref|YP_001984559.1| oxygen-independent coprophorphyrinogen III o... 590 e-166 >ref|NP_768647.2| coproporphyrinogen III oxidase [Bradyrhizobium japonicum USDA 110] gb|AAF79211.1|AF276709_1 coproporphyrinogen III dehydrogenase [Bradyrhizobium japonicum] gb|AAG60979.1|AF322013_98 HemN1 [Bradyrhizobium japonicum] Length = 445 Score = 745 bits (1924), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/443 (81%), Positives = 403/443 (90%) Query: 6 LQTALLNKYCDARLPWYTIYPTVPDFSTTIGARTCQTWLNRLPPDEPVSLYIHVPFCRSI 65 +QT+LLNKYCDARLPWYTIYPTVPDFS T+GA+TC+TWL RLPPD+PVSLYIHVPFCR+I Sbjct: 1 MQTSLLNKYCDARLPWYTIYPTVPDFSATVGAKTCETWLRRLPPDDPVSLYIHVPFCRAI 60 Query: 66 CWYCGFPTSLTRSERPIRNYLTSLREEIRLVAERLPRALPVNDVHFGGGTPTSIAAVDFL 125 CWYCGFPTSLTRSERPIR YL +L EIRLVAE+ PRALPV+DVHFGGGTPT+IA DFL Sbjct: 61 CWYCGFPTSLTRSERPIRKYLATLHAEIRLVAEQAPRALPVSDVHFGGGTPTTIAPADFL 120 Query: 126 ALMELLRRYFAFSTSASVAIEIDPRALTTEMAQSLGAAGVSRASIGVQSFDTKVQRAVNR 185 ALM LLRR FAFS SA++AIEIDPRA T EM ++L AGV+RASIGVQSFD VQR+VNR Sbjct: 121 ALMALLRRCFAFSKSATIAIEIDPRAFTAEMVETLQVAGVNRASIGVQSFDGVVQRSVNR 180 Query: 186 IQSETQTASAVESLRQQGISRINFDLLFGLPHQTVQSCVNSARTAAAMRPDRLAVFGYAH 245 +QSE QTAS VESLRQ GISRINFDLLFGLPHQTV+SCV+S RTA AMRPDRLAVFGYAH Sbjct: 181 VQSEVQTASVVESLRQHGISRINFDLLFGLPHQTVRSCVDSTRTALAMRPDRLAVFGYAH 240 Query: 246 VPSYMKRQRQIDETALPDNVARVEQAAAMANTLVSAGYRQIGLDHFALPDDELTLAQEAG 305 VPSYMKRQRQIDETALPDN+AR EQAAA+A+TLVSAGYRQIGLDHFALP+DEL LAQ+AG Sbjct: 241 VPSYMKRQRQIDETALPDNLARAEQAAAIADTLVSAGYRQIGLDHFALPNDELALAQKAG 300 Query: 306 RLRRNSLGYSADTCKTVIGLGPSAIGRLGDGYVQNAAETATYSRHIRAGRLATSKGCCLT 365 +LRRNSLGYSADTCKTVIGLGPSAIGRL +GYVQN + TA+Y +HI+AGR ATSKG CL+ Sbjct: 301 QLRRNSLGYSADTCKTVIGLGPSAIGRLREGYVQNESATASYHQHIQAGRPATSKGYCLS 360 Query: 366 EEDRLRAAIIERLMCDLEADVPALCAAHGVDPIGFLDSADRLEMLSEDGIVEIQDGFIRV 425 EDRLRAAIIERLMCDL+ADVPA+CAAHG DPI L+SADRL ML+EDGIV+I++GFIRV Sbjct: 361 PEDRLRAAIIERLMCDLQADVPAICAAHGFDPIPLLNSADRLGMLAEDGIVDIEEGFIRV 420 Query: 426 KHEHRFVVRAVAAAFDAHLDRTP 448 K EHRF+VRAVAAAFD +LDR P Sbjct: 421 KQEHRFLVRAVAAAFDTYLDRIP 443 >dbj|BAC47272.1| coproporphyrinogen III dehydrogenase [Bradyrhizobium japonicum USDA 110] Length = 423 Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/421 (80%), Positives = 381/421 (90%) Query: 28 VPDFSTTIGARTCQTWLNRLPPDEPVSLYIHVPFCRSICWYCGFPTSLTRSERPIRNYLT 87 +PDFS T+GA+TC+TWL RLPPD+PVSLYIHVPFCR+ICWYCGFPTSLTRSERPIR YL Sbjct: 1 MPDFSATVGAKTCETWLRRLPPDDPVSLYIHVPFCRAICWYCGFPTSLTRSERPIRKYLA 60 Query: 88 SLREEIRLVAERLPRALPVNDVHFGGGTPTSIAAVDFLALMELLRRYFAFSTSASVAIEI 147 +L EIRLVAE+ PRALPV+DVHFGGGTPT+IA DFLALM LLRR FAFS SA++AIEI Sbjct: 61 TLHAEIRLVAEQAPRALPVSDVHFGGGTPTTIAPADFLALMALLRRCFAFSKSATIAIEI 120 Query: 148 DPRALTTEMAQSLGAAGVSRASIGVQSFDTKVQRAVNRIQSETQTASAVESLRQQGISRI 207 DPRA T EM ++L AGV+RASIGVQSFD VQR+VNR+QSE QTAS VESLRQ GISRI Sbjct: 121 DPRAFTAEMVETLQVAGVNRASIGVQSFDGVVQRSVNRVQSEVQTASVVESLRQHGISRI 180 Query: 208 NFDLLFGLPHQTVQSCVNSARTAAAMRPDRLAVFGYAHVPSYMKRQRQIDETALPDNVAR 267 NFDLLFGLPHQTV+SCV+S RTA AMRPDRLAVFGYAHVPSYMKRQRQIDETALPDN+AR Sbjct: 181 NFDLLFGLPHQTVRSCVDSTRTALAMRPDRLAVFGYAHVPSYMKRQRQIDETALPDNLAR 240 Query: 268 VEQAAAMANTLVSAGYRQIGLDHFALPDDELTLAQEAGRLRRNSLGYSADTCKTVIGLGP 327 EQAAA+A+TLVSAGYRQIGLDHFALP+DEL LAQ+AG+LRRNSLGYSADTCKTVIGLGP Sbjct: 241 AEQAAAIADTLVSAGYRQIGLDHFALPNDELALAQKAGQLRRNSLGYSADTCKTVIGLGP 300 Query: 328 SAIGRLGDGYVQNAAETATYSRHIRAGRLATSKGCCLTEEDRLRAAIIERLMCDLEADVP 387 SAIGRL +GYVQN + TA+Y +HI+AGR ATSKG CL+ EDRLRAAIIERLMCDL+ADVP Sbjct: 301 SAIGRLREGYVQNESATASYHQHIQAGRPATSKGYCLSPEDRLRAAIIERLMCDLQADVP 360 Query: 388 ALCAAHGVDPIGFLDSADRLEMLSEDGIVEIQDGFIRVKHEHRFVVRAVAAAFDAHLDRT 447 A+CAAHG DPI L+SADRL ML+EDGIV+I++GFIRVK EHRF+VRAVAAAFD +LDR Sbjct: 361 AICAAHGFDPIPLLNSADRLGMLAEDGIVDIEEGFIRVKQEHRFLVRAVAAAFDTYLDRI 420 Query: 448 P 448 P Sbjct: 421 P 421 >ref|NP_106909.1| coproporphyrinogen III oxidase [Mesorhizobium loti MAFF303099] dbj|BAB52695.1| coproporphyrinogen III dehydrogenase [Mesorhizobium loti MAFF303099] emb|CAD31440.1| PROBABLE OXYGEN-INDEPENDENT COPROPORPHYRINOGEN III OXIDASE PROTEIN [Mesorhizobium loti R7A] Length = 441 Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust. Identities = 297/436 (68%), Positives = 364/436 (83%) Query: 12 NKYCDARLPWYTIYPTVPDFSTTIGARTCQTWLNRLPPDEPVSLYIHVPFCRSICWYCGF 71 K+ +ARLPWYTIYPTV +FS +GA + WL LP ++P SLY+HVPFCRS CWYCGF Sbjct: 4 TKHREARLPWYTIYPTVAEFSGAVGADAYEEWLRNLPANDPASLYLHVPFCRSKCWYCGF 63 Query: 72 PTSLTRSERPIRNYLTSLREEIRLVAERLPRALPVNDVHFGGGTPTSIAAVDFLALMELL 131 PT++TR + PI NYL +LR+EIRLV+E P+ALPV+DVHFGGGTPT + V+FLAL E L Sbjct: 64 PTTITRHDAPIVNYLAALRDEIRLVSEHAPQALPVSDVHFGGGTPTLMGPVEFLALTEFL 123 Query: 132 RRYFAFSTSASVAIEIDPRALTTEMAQSLGAAGVSRASIGVQSFDTKVQRAVNRIQSETQ 191 RR+FA + +A++A+EIDPR T +MA++L AAGV+RAS+GVQSFD VQ+A+NR+QSE Q Sbjct: 124 RRHFALAETATIAVEIDPRTFTADMAEALQAAGVNRASLGVQSFDPIVQKAINRVQSEAQ 183 Query: 192 TASAVESLRQQGISRINFDLLFGLPHQTVQSCVNSARTAAAMRPDRLAVFGYAHVPSYMK 251 TA+AVE LR+ G++ INFDL+FGLPHQTVQSCV + R A AMRP+RLAVFGY+H+PS++K Sbjct: 184 TAAAVEMLRRHGVTSINFDLIFGLPHQTVQSCVETTRAAVAMRPNRLAVFGYSHIPSFIK 243 Query: 252 RQRQIDETALPDNVARVEQAAAMANTLVSAGYRQIGLDHFALPDDELTLAQEAGRLRRNS 311 QR I+E +LP + AR EQ AA+A TL++AGYR+IGLDHFALPDD+L LAQ+ GRLRRNS Sbjct: 244 NQRLIEEASLPGSAARAEQDAAIAVTLIAAGYREIGLDHFALPDDDLALAQKTGRLRRNS 303 Query: 312 LGYSADTCKTVIGLGPSAIGRLGDGYVQNAAETATYSRHIRAGRLATSKGCCLTEEDRLR 371 LGYSADTCKT+IG G SAIGR+G+GYVQN +Y RHI AGRLATSKG LT+EDR R Sbjct: 304 LGYSADTCKTLIGFGASAIGRVGEGYVQNEVTRDSYCRHIAAGRLATSKGYRLTDEDRAR 363 Query: 372 AAIIERLMCDLEADVPALCAAHGVDPIGFLDSADRLEMLSEDGIVEIQDGFIRVKHEHRF 431 AAIIERLMCDLEADVPA+CAAHG DPI FLDSA+RL ML++DGIV+I+ GF+RV+ +HRF Sbjct: 364 AAIIERLMCDLEADVPAICAAHGSDPIHFLDSAERLAMLAKDGIVDIEKGFVRVRRQHRF 423 Query: 432 VVRAVAAAFDAHLDRT 447 +R VAAAFDA LDR Sbjct: 424 AMRVVAAAFDAFLDRV 439 >ref|YP_004144778.1| oxygen-independent coproporphyrinogen III oxidase [Mesorhizobium ciceri biovar biserrulae WSM1271] ref|YP_004614708.1| oxygen-independent coproporphyrinogen III oxidase [Mesorhizobium opportunistum WSM2075] gb|ADV14728.1| oxygen-independent coproporphyrinogen III oxidase [Mesorhizobium ciceri biovar biserrulae WSM1271] gb|AEH90614.1| oxygen-independent coproporphyrinogen III oxidase [Mesorhizobium opportunistum WSM2075] Length = 451 Score = 620 bits (1599), Expect = e-175, Method: Compositional matrix adjust. Identities = 303/443 (68%), Positives = 371/443 (83%), Gaps = 1/443 (0%) Query: 6 LQTALLNKYCDARLPWYTIYPTVPDFSTTIGARTCQTWLNRLPPDEPVSLYIHVPFCRSI 65 +QT++L +Y +A LPWYTIYPTVP+F+ T+ + Q WL LP D+PVSLY+H+PFCRSI Sbjct: 1 MQTSILKEYREALLPWYTIYPTVPEFTATVRPESYQEWLRGLPADDPVSLYLHIPFCRSI 60 Query: 66 CWYCGFPTSLTRSERPIRNYLTSLREEIRLVAERLPRALPVNDVHFGGGTPTSIAAVDFL 125 CWYCGFPT++ R++ PI +YL LR+EIRLV E++ + L VNDVHFGGGTPT I A +FL Sbjct: 61 CWYCGFPTTIARNQGPILDYLAVLRDEIRLVWEQVQQGLVVNDVHFGGGTPTLIGAAEFL 120 Query: 126 ALMELLRRYFAFSTSASVAIEIDPRALTTEMAQSLGAAGVSRASIGVQSFDTKVQRAVNR 185 A+++LLRR FAF SA++A+EIDPR T E+A+++GAA VSRAS+GVQSFD VQ+A+NR Sbjct: 121 AMIQLLRRRFAFRESATIAVEIDPRTFTAEIAEAMGAANVSRASLGVQSFDPIVQKAINR 180 Query: 186 IQSETQTASAVESLRQQGISRINFDLLFGLPHQTVQSCVNSARTAAAMRPDRLAVFGYAH 245 +QSE QTA+AVE LR+ G+S IN DL+FGLP+QTV+SCV +A AMRP+RLAVFGYAH Sbjct: 181 VQSEAQTAAAVEELRRHGVSGINVDLIFGLPNQTVESCVQTAAATVAMRPNRLAVFGYAH 240 Query: 246 VPSYMKRQRQIDETALPDNVARVEQAAAMANTLVSAGYRQIGLDHFALPDDELTLAQEAG 305 +PS +K QR I+ TALPD+VAR EQAAA+A TLV+AGY++IGLDHFALPDDELTLAQ +G Sbjct: 241 IPSVIKNQRLIETTALPDSVARAEQAAAVAETLVAAGYQEIGLDHFALPDDELTLAQTSG 300 Query: 306 RLRRNSLGYSADTCKTVIGLGPSAIGRLGDGYVQNAAETATYSRHIRAGRLATSKGCCLT 365 RLRRNSLGYSADTCKT+IG G SAIGR+G+GYVQN +YSRHI AGRLATSKG LT Sbjct: 301 RLRRNSLGYSADTCKTLIGFGASAIGRVGEGYVQNEVTRESYSRHIAAGRLATSKGYRLT 360 Query: 366 EEDRLRAAIIERLMCDLEADVPALCAAHGVDPIGFLDS-ADRLEMLSEDGIVEIQDGFIR 424 ++DR+RA IIERLMCDL+ADVPA+CAA G DP LDS A+RL L+EDGIV+I++GFIR Sbjct: 361 DDDRVRAVIIERLMCDLQADVPAICAACGFDPTRLLDSAAERLAKLAEDGIVDIENGFIR 420 Query: 425 VKHEHRFVVRAVAAAFDAHLDRT 447 V+ EHRFVVRAVAAAFDA LDR Sbjct: 421 VRQEHRFVVRAVAAAFDAFLDRV 443 >ref|YP_001984559.1| oxygen-independent coprophorphyrinogen III oxidase protein [Rhizobium etli CIAT 652] gb|ACE94009.1| oxygen-independent coprophorphyrinogen III oxidase protein [Rhizobium etli CIAT 652] Length = 464 Score = 590 bits (1520), Expect = e-166, Method: Compositional matrix adjust. Identities = 283/437 (64%), Positives = 342/437 (78%) Query: 12 NKYCDARLPWYTIYPTVPDFSTTIGARTCQTWLNRLPPDEPVSLYIHVPFCRSICWYCGF 71 N A+LPWYTIYPT+ +FS IGA T + WL D+ VSLY+H+PFCRS+CWYCGF Sbjct: 27 NTNSGAQLPWYTIYPTIQEFSPEIGAHTYEQWLRSQGTDDAVSLYLHIPFCRSMCWYCGF 86 Query: 72 PTSLTRSERPIRNYLTSLREEIRLVAERLPRALPVNDVHFGGGTPTSIAAVDFLALMELL 131 PTS+TR + I +YL LREEIRLVAE++P+AL V DVHFGGG+PT + + DFL+LMELL Sbjct: 87 PTSITRRDTLITDYLAMLREEIRLVAEQVPQALSVGDVHFGGGSPTIMPSADFLSLMELL 146 Query: 132 RRYFAFSTSASVAIEIDPRALTTEMAQSLGAAGVSRASIGVQSFDTKVQRAVNRIQSETQ 191 R FA A++A+E+DPR TT+MA++L GV+RAS+GVQSFD VQ+A+NRIQSE Q Sbjct: 147 RGRFALERGATIAVEVDPRTFTTDMAEALERTGVNRASVGVQSFDPVVQKAINRIQSEAQ 206 Query: 192 TASAVESLRQQGISRINFDLLFGLPHQTVQSCVNSARTAAAMRPDRLAVFGYAHVPSYMK 251 +AVE+LR G+ RINFDL+FGLP+QTVQSC+ SA A AMRPDRLAVFGY+HVPS+ K Sbjct: 207 VMTAVENLRLHGVRRINFDLMFGLPNQTVQSCLESAMLAIAMRPDRLAVFGYSHVPSFRK 266 Query: 252 RQRQIDETALPDNVARVEQAAAMANTLVSAGYRQIGLDHFALPDDELTLAQEAGRLRRNS 311 QR ID ALPD AR EQA+AMA+TLV+AGY QIGLDHFALPDDEL +AQ AGRLRRNS Sbjct: 267 NQRLIDTAALPDIAARAEQASAMADTLVAAGYLQIGLDHFALPDDELAIAQRAGRLRRNS 326 Query: 312 LGYSADTCKTVIGLGPSAIGRLGDGYVQNAAETATYSRHIRAGRLATSKGCCLTEEDRLR 371 LGYSA+TC TVIGLG SAIGR GDGYVQN + Y+RHI +GRLA S+G L EDR+R Sbjct: 327 LGYSAETCSTVIGLGASAIGRCGDGYVQNDLTQSCYNRHIASGRLAISRGYRLATEDRVR 386 Query: 372 AAIIERLMCDLEADVPALCAAHGVDPIGFLDSADRLEMLSEDGIVEIQDGFIRVKHEHRF 431 AAIIE+LMC LEAD+ A+C A G D + SA +LE+L+EDGIVE +G +RV+HE R Sbjct: 387 AAIIEQLMCYLEADISAICTAQGFDQTHLVSSAKQLEILAEDGIVEFDNGLVRVRHERRS 446 Query: 432 VVRAVAAAFDAHLDRTP 448 +R VAAAFDA+L R P Sbjct: 447 ALRHVAAAFDAYLGRQP 463