BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0004.p         (78 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001207864.1| hypothetical protein BRADO5993 [Bradyrhizobi...    72   3e-11
ref|YP_001237897.1| hypothetical protein BBta_1784 [Bradyrhizobi...    71   5e-11
ref|ZP_07374522.1| putative O-antigen polymerase [Ahrensia sp. R...    35   5.3  

>ref|YP_001207864.1| hypothetical protein BRADO5993 [Bradyrhizobium sp. ORS 278]
 emb|CAL79649.1| hypothetical protein BRADO5993 [Bradyrhizobium sp. ORS 278]
          Length = 52

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/50 (64%), Positives = 40/50 (80%)

Query: 18 WHARVQRVDQRPVVIDGMLFPMLDIGFAWSDPDAAIADAKRAIDRFPQRY 67
          WHAR++R D  PVVI+G+ FP L++GFAWSD D AIADAK  IDRF +R+
Sbjct: 2  WHARIRRADMTPVVINGVSFPSLEVGFAWSDADMAIADAKSHIDRFRKRW 51


>ref|YP_001237897.1| hypothetical protein BBta_1784 [Bradyrhizobium sp. BTAi1]
 gb|ABQ33991.1| hypothetical protein BBta_1784 [Bradyrhizobium sp. BTAi1]
          Length = 52

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 40/51 (78%)

Query: 18 WHARVQRVDQRPVVIDGMLFPMLDIGFAWSDPDAAIADAKRAIDRFPQRYG 68
          WHAR++RVD  PVVI+G+ FP +++GFAWSD D A+ADAK  IDRF  R+ 
Sbjct: 2  WHARIRRVDMSPVVINGVSFPSVEVGFAWSDADRAVADAKSHIDRFRTRWS 52


>ref|ZP_07374522.1| putative O-antigen polymerase [Ahrensia sp. R2A130]
 gb|EFL89572.1| putative O-antigen polymerase [Ahrensia sp. R2A130]
          Length = 421

 Score = 34.7 bits (78), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 14  GKGQWHARVQRVDQRPVVID-GMLFPMLDIGFAWS-DPDAAIADAKRAI 60
           G+  WH   Q +D RPV+I  GM+     I   WS DP  A+ D    I
Sbjct: 71  GRSSWHGEWQAMDARPVIISLGMVLIWWTISLLWSPDPSFALRDGAGVI 119