BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0010.0002.p (281 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774071.1| excinuclease ABC subunit B [Bradyrhizobium japo... 508 e-142 ref|YP_001207866.1| excinuclease ABC subunit B [Bradyrhizobium s... 504 e-141 ref|ZP_01046988.1| excinuclease ABC subunit B [Nitrobacter sp. N... 502 e-140 ref|YP_319100.1| excinuclease ABC subunit B [Nitrobacter winogra... 499 e-139 ref|YP_578150.1| excinuclease ABC subunit B [Nitrobacter hamburg... 497 e-139 >ref|NP_774071.1| excinuclease ABC subunit B [Bradyrhizobium japonicum USDA 110] dbj|BAC52696.1| excinuclease ABC subunit B [Bradyrhizobium japonicum USDA 110] Length = 975 Score = 508 bits (1309), Expect = e-142, Method: Compositional matrix adjust. Identities = 251/280 (89%), Positives = 263/280 (93%), Gaps = 3/280 (1%) Query: 1 LLNPAINRGDAGMGSGTGLQPPPDNSWDRRAGGEAAAHRARASTRETSEGVARRDTSGLG 60 LLNPAINRGDAG+GSGTGLQPPPDNS DRRAGGEAAAHRARAST + +GL Sbjct: 43 LLNPAINRGDAGLGSGTGLQPPPDNSRDRRAGGEAAAHRARAST---PKDFPSDRPAGLD 99 Query: 61 EAPQANYGTSATIPTLDPELARQLGLPTAEDDEEALARPPRSKMEALGVKATADALENLI 120 EAPQANYGT+ATIPTLDPELARQLGLPT EDD EALARPPRSKMEALGVKATADALE+LI Sbjct: 100 EAPQANYGTAATIPTLDPELARQLGLPTEEDDAEALARPPRSKMEALGVKATADALESLI 159 Query: 121 RDGRPEFRKDDGSMRVWTPHRPPRPEKSEGGVRFEIKSDYQPKGDQPTAIAELVEGIDRN 180 R+GRPEFRKDDGS +VWTPHRPPRPEKSEGGVRFEIKS Y+P+GDQPTAIAELVEGI+RN Sbjct: 160 REGRPEFRKDDGSTKVWTPHRPPRPEKSEGGVRFEIKSHYEPRGDQPTAIAELVEGIERN 219 Query: 181 DRTQVLLGVTGSGKTYTMAKVIEATQRPALILAPNKTLAAQLYGEFKNFFPDNAVEYFVS 240 DR+QVLLGVTGSGKTYTMAKVIEATQRPA+ILAPNKTLAAQLYGEFKNFFPDNAVEYFVS Sbjct: 220 DRSQVLLGVTGSGKTYTMAKVIEATQRPAIILAPNKTLAAQLYGEFKNFFPDNAVEYFVS 279 Query: 241 YYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRHSATRALL 280 YYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRHSATRALL Sbjct: 280 YYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRHSATRALL 319 >ref|YP_001207866.1| excinuclease ABC subunit B [Bradyrhizobium sp. ORS 278] emb|CAL79651.1| putative UvrABC system, protein B (UvrB, Excinuclease ABC subunit B) [Bradyrhizobium sp. ORS 278] Length = 1052 Score = 504 bits (1297), Expect = e-141, Method: Compositional matrix adjust. Identities = 251/308 (81%), Positives = 266/308 (86%), Gaps = 28/308 (9%) Query: 1 LLNPAINRGDAGMGSGTGLQPPPDNSWDRRAGGEAAAHRARASTRETSEGVARRDT---- 56 LLNPAINRG++G+GS TGLQPPPDNSWDRR GGEAAAHRARASTR S V RD+ Sbjct: 38 LLNPAINRGESGIGSSTGLQPPPDNSWDRRTGGEAAAHRARASTRTKSADVTARDSGDRA 97 Query: 57 ------------------------SGLGEAPQANYGTSATIPTLDPELARQLGLPTAEDD 92 +GL EAPQA YGTSATIPTLDPELARQLGLPTAEDD Sbjct: 98 MPLRPNPQPAGARAGSTPDDGAELTGLSEAPQAKYGTSATIPTLDPELARQLGLPTAEDD 157 Query: 93 EEALARPPRSKMEALGVKATADALENLIRDGRPEFRKDDGSMRVWTPHRPPRPEKSEGGV 152 +EALARPPRSKMEALGVKATA+ALE+LIR+GRPEFRKDDGS++VWTPHRPPRPEKSEGGV Sbjct: 158 DEALARPPRSKMEALGVKATAEALESLIREGRPEFRKDDGSLKVWTPHRPPRPEKSEGGV 217 Query: 153 RFEIKSDYQPKGDQPTAIAELVEGIDRNDRTQVLLGVTGSGKTYTMAKVIEATQRPALIL 212 RFEIKS Y+PKGDQP AI ELVEG+ RNDRTQVLLGVTGSGKTYTMAKVIEATQRPALIL Sbjct: 218 RFEIKSAYEPKGDQPQAIKELVEGVARNDRTQVLLGVTGSGKTYTMAKVIEATQRPALIL 277 Query: 213 APNKTLAAQLYGEFKNFFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMR 272 APNKTLAAQLYGEFK+FFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMR Sbjct: 278 APNKTLAAQLYGEFKSFFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMR 337 Query: 273 HSATRALL 280 H+ATRALL Sbjct: 338 HAATRALL 345 >ref|ZP_01046988.1| excinuclease ABC subunit B [Nitrobacter sp. Nb-311A] gb|EAQ35090.1| excinuclease ABC subunit B [Nitrobacter sp. Nb-311A] Length = 1008 Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust. Identities = 249/298 (83%), Positives = 265/298 (88%), Gaps = 18/298 (6%) Query: 1 LLNPAINRGDAGMGSGTGLQPPPDNSWDRRAGGEAAAHRARASTRETSEGVARRDTS--- 57 LLNPAINRGDAG+GSGTGLQPPPDNSWDRR+GGEAAAHRAR STR S+ A+RD + Sbjct: 42 LLNPAINRGDAGLGSGTGLQPPPDNSWDRRSGGEAAAHRARRSTRGKSDATAKRDATSSP 101 Query: 58 ----------GLGEAPQA-----NYGTSATIPTLDPELARQLGLPTAEDDEEALARPPRS 102 G EAPQ NYGTSATIP LDPELARQLGLPTAEDDE+ALARPPRS Sbjct: 102 FSPQGEVARDGFDEAPQPEFATPNYGTSATIPMLDPELARQLGLPTAEDDEDALARPPRS 161 Query: 103 KMEALGVKATADALENLIRDGRPEFRKDDGSMRVWTPHRPPRPEKSEGGVRFEIKSDYQP 162 KME LGVKATA++LE L+RDGRPEF+KDDGS+++WTPHRPPRPEKSEGGVRFEIKS+YQP Sbjct: 162 KMEGLGVKATAESLEALLRDGRPEFKKDDGSLKLWTPHRPPRPEKSEGGVRFEIKSEYQP 221 Query: 163 KGDQPTAIAELVEGIDRNDRTQVLLGVTGSGKTYTMAKVIEATQRPALILAPNKTLAAQL 222 KGDQP AI ELVEGI RNDRTQVLLGVTGSGKTYTMAKVIEATQRPALILAPNKTLAAQL Sbjct: 222 KGDQPQAIRELVEGIRRNDRTQVLLGVTGSGKTYTMAKVIEATQRPALILAPNKTLAAQL 281 Query: 223 YGEFKNFFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRHSATRALL 280 YGEFK+FFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRH+ATRALL Sbjct: 282 YGEFKSFFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRHAATRALL 339 >ref|YP_319100.1| excinuclease ABC subunit B [Nitrobacter winogradskyi Nb-255] gb|ABA05748.1| Excinuclease ABC subunit B [Nitrobacter winogradskyi Nb-255] Length = 1032 Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust. Identities = 248/309 (80%), Positives = 264/309 (85%), Gaps = 29/309 (9%) Query: 1 LLNPAINRGDAGMGSGTGLQPPPDNSWDRRAGGEAAAHRARASTRETSEGVARRDT---- 56 LLNPAINRGDAG+GSGTGLQPPPDNSWDRR+GGEAAAHRAR STR S+ A+RD Sbjct: 52 LLNPAINRGDAGLGSGTGLQPPPDNSWDRRSGGEAAAHRARRSTRGKSDATAKRDAASAT 111 Query: 57 -------------------------SGLGEAPQANYGTSATIPTLDPELARQLGLPTAED 91 SG EAPQA YGTSATIPTLDPELARQLG+PTAED Sbjct: 112 FENPPPSQPSKSELRSSRRPARGIESGFEEAPQAIYGTSATIPTLDPELARQLGMPTAED 171 Query: 92 DEEALARPPRSKMEALGVKATADALENLIRDGRPEFRKDDGSMRVWTPHRPPRPEKSEGG 151 DE+ALARPPRSKME LGVKATA++LE L+RDGRPEF+ DGS+++WTPHRPPRPEKSEGG Sbjct: 172 DEDALARPPRSKMEGLGVKATAESLEALLRDGRPEFKTGDGSLKLWTPHRPPRPEKSEGG 231 Query: 152 VRFEIKSDYQPKGDQPTAIAELVEGIDRNDRTQVLLGVTGSGKTYTMAKVIEATQRPALI 211 VRFEIKS+YQPKGDQP AI ELVEGI RNDRTQVLLGVTGSGKTYTMAKVIEATQRPALI Sbjct: 232 VRFEIKSEYQPKGDQPQAIRELVEGIRRNDRTQVLLGVTGSGKTYTMAKVIEATQRPALI 291 Query: 212 LAPNKTLAAQLYGEFKNFFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRM 271 LAPNKTLAAQLYGEFK+FFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRM Sbjct: 292 LAPNKTLAAQLYGEFKSFFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRM 351 Query: 272 RHSATRALL 280 RH+ATRALL Sbjct: 352 RHAATRALL 360 >ref|YP_578150.1| excinuclease ABC subunit B [Nitrobacter hamburgensis X14] gb|ABE63690.1| Excinuclease ABC subunit B [Nitrobacter hamburgensis X14] Length = 1011 Score = 497 bits (1279), Expect = e-139, Method: Compositional matrix adjust. Identities = 247/298 (82%), Positives = 264/298 (88%), Gaps = 18/298 (6%) Query: 1 LLNPAINRGDAGMGSGTGLQPPPDNSWDRRAGGEAAAHRARASTRETSEGVARRDTS--- 57 LLNPAINRGDAG+GSGTGLQPPPDNSWDRR+GGEAAAHRARASTR SE A RD + Sbjct: 49 LLNPAINRGDAGLGSGTGLQPPPDNSWDRRSGGEAAAHRARASTRGKSELTAERDAAHSS 108 Query: 58 ----------GLGEAPQA-----NYGTSATIPTLDPELARQLGLPTAEDDEEALARPPRS 102 G EA Q+ YGTSAT+P LDPELARQLGLPTAEDD+EALARPPR+ Sbjct: 109 PPSSGEDVGRGFDEAQQSEFATPTYGTSATVPALDPELARQLGLPTAEDDDEALARPPRN 168 Query: 103 KMEALGVKATADALENLIRDGRPEFRKDDGSMRVWTPHRPPRPEKSEGGVRFEIKSDYQP 162 KME LGVKATA++LE L+RDGRPEFR D+G+M+VWTPHRPPRPEKSEGGVRF IKS+Y+P Sbjct: 169 KMEGLGVKATAESLEALLRDGRPEFRGDNGAMKVWTPHRPPRPEKSEGGVRFVIKSEYEP 228 Query: 163 KGDQPTAIAELVEGIDRNDRTQVLLGVTGSGKTYTMAKVIEATQRPALILAPNKTLAAQL 222 KGDQPTAI ELVEGI+RNDRTQVLLGVTGSGKTYTMAKVIEATQRPALILAPNKTLAAQL Sbjct: 229 KGDQPTAIKELVEGINRNDRTQVLLGVTGSGKTYTMAKVIEATQRPALILAPNKTLAAQL 288 Query: 223 YGEFKNFFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRHSATRALL 280 YGEFK+FFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRHSATRALL Sbjct: 289 YGEFKSFFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRHSATRALL 346