BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0001.p         (353 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_774071.1| excinuclease ABC subunit B [Bradyrhizobium japo...   298   9e-79
ref|YP_533982.1| excinuclease ABC subunit B [Rhodopseudomonas pa...   292   5e-77
ref|YP_571107.1| excinuclease ABC subunit B [Rhodopseudomonas pa...   285   1e-74
ref|YP_783096.1| excinuclease ABC subunit B [Rhodopseudomonas pa...   284   2e-74
ref|ZP_01046988.1| excinuclease ABC subunit B [Nitrobacter sp. N...   281   8e-74

>ref|NP_774071.1| excinuclease ABC subunit B [Bradyrhizobium japonicum USDA 110]
 dbj|BAC52696.1| excinuclease ABC subunit B [Bradyrhizobium japonicum USDA 110]
          Length = 975

 Score =  298 bits (763), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 141/143 (98%), Positives = 143/143 (100%)

Query: 2   IADLVALQYKRTQAEFTRGTFRVRGDVIDIFPAHYEDRAWRVNLFGDTIETIEEFDPLTG 61
           IADLVALQYKRTQA+FTRGTFRVRGDVIDIFPAHYEDRAWRVNLFGDTIETIEEFDPLTG
Sbjct: 361 IADLVALQYKRTQADFTRGTFRVRGDVIDIFPAHYEDRAWRVNLFGDTIETIEEFDPLTG 420

Query: 62  HKQDELEFIKMYANSHYVTPRPTLVQAIKSIKSELKQRLDQLNDQGRLLEAQRLEQRTTF 121
           HKQDELEFIKMYANSHYVTPRPTLVQAIKSIKSELKQRLDQL+DQGRLLEAQRLEQRTTF
Sbjct: 421 HKQDELEFIKMYANSHYVTPRPTLVQAIKSIKSELKQRLDQLHDQGRLLEAQRLEQRTTF 480

Query: 122 DLEMMEATGSCAGIENYSRYLTG 144
           DLEMMEATGSCAGIENYSRYLTG
Sbjct: 481 DLEMMEATGSCAGIENYSRYLTG 503


>ref|YP_533982.1| excinuclease ABC subunit B [Rhodopseudomonas palustris BisB18]
 gb|ABD89663.1| Excinuclease ABC subunit B [Rhodopseudomonas palustris BisB18]
          Length = 1053

 Score =  292 bits (748), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 136/143 (95%), Positives = 142/143 (99%)

Query: 2   IADLVALQYKRTQAEFTRGTFRVRGDVIDIFPAHYEDRAWRVNLFGDTIETIEEFDPLTG 61
           IADLVALQYKRTQA+FTRGTFRVRGDVIDIFPAHYEDRAWRVNLFGDT+ETIEEFDPLTG
Sbjct: 402 IADLVALQYKRTQADFTRGTFRVRGDVIDIFPAHYEDRAWRVNLFGDTVETIEEFDPLTG 461

Query: 62  HKQDELEFIKMYANSHYVTPRPTLVQAIKSIKSELKQRLDQLNDQGRLLEAQRLEQRTTF 121
           HKQDELEFIK+YANSHYVTPRPTL+QAIKSIK+ELK RLDQLNDQGRLLEAQRLEQRTTF
Sbjct: 462 HKQDELEFIKIYANSHYVTPRPTLLQAIKSIKAELKWRLDQLNDQGRLLEAQRLEQRTTF 521

Query: 122 DLEMMEATGSCAGIENYSRYLTG 144
           D+EMMEATGSCAGIENYSRYLTG
Sbjct: 522 DIEMMEATGSCAGIENYSRYLTG 544


>ref|YP_571107.1| excinuclease ABC subunit B [Rhodopseudomonas palustris BisB5]
 gb|ABE41206.1| Excinuclease ABC subunit B [Rhodopseudomonas palustris BisB5]
          Length = 1047

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 133/143 (93%), Positives = 140/143 (97%)

Query: 2   IADLVALQYKRTQAEFTRGTFRVRGDVIDIFPAHYEDRAWRVNLFGDTIETIEEFDPLTG 61
           IADLVALQYKRTQA+FTRGTFRVRGDVIDIFPAHYEDRAWRV LFGDT+ETIEEFDPLTG
Sbjct: 431 IADLVALQYKRTQADFTRGTFRVRGDVIDIFPAHYEDRAWRVGLFGDTVETIEEFDPLTG 490

Query: 62  HKQDELEFIKMYANSHYVTPRPTLVQAIKSIKSELKQRLDQLNDQGRLLEAQRLEQRTTF 121
           HKQDELEF+K+YANSHYVTPRPTL+QAIKSIKSELK RLDQL+ QGRLLEAQRLEQRTTF
Sbjct: 491 HKQDELEFVKIYANSHYVTPRPTLIQAIKSIKSELKWRLDQLHAQGRLLEAQRLEQRTTF 550

Query: 122 DLEMMEATGSCAGIENYSRYLTG 144
           D+EMMEATGSCAGIENYSRYLTG
Sbjct: 551 DIEMMEATGSCAGIENYSRYLTG 573


>ref|YP_783096.1| excinuclease ABC subunit B [Rhodopseudomonas palustris BisA53]
 gb|ABJ08116.1| Excinuclease ABC subunit B [Rhodopseudomonas palustris BisA53]
          Length = 1023

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 131/143 (91%), Positives = 141/143 (98%)

Query: 2   IADLVALQYKRTQAEFTRGTFRVRGDVIDIFPAHYEDRAWRVNLFGDTIETIEEFDPLTG 61
           IADLVALQYKRTQA+F+RGTFRVRGDVIDIFPAHYEDRAWRVNLFGDT+ETIEEFDPLTG
Sbjct: 378 IADLVALQYKRTQADFSRGTFRVRGDVIDIFPAHYEDRAWRVNLFGDTVETIEEFDPLTG 437

Query: 62  HKQDELEFIKMYANSHYVTPRPTLVQAIKSIKSELKQRLDQLNDQGRLLEAQRLEQRTTF 121
           HKQDELEFIK+YANSHYVTPRPTL+QA++SIKSELK RLD+L+ QGRLLEAQRLEQRTTF
Sbjct: 438 HKQDELEFIKIYANSHYVTPRPTLIQAMQSIKSELKMRLDELHAQGRLLEAQRLEQRTTF 497

Query: 122 DLEMMEATGSCAGIENYSRYLTG 144
           D+EMMEATGSCAGIENYSRYLTG
Sbjct: 498 DIEMMEATGSCAGIENYSRYLTG 520


>ref|ZP_01046988.1| excinuclease ABC subunit B [Nitrobacter sp. Nb-311A]
 gb|EAQ35090.1| excinuclease ABC subunit B [Nitrobacter sp. Nb-311A]
          Length = 1008

 Score =  281 bits (720), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 132/143 (92%), Positives = 139/143 (97%)

Query: 2   IADLVALQYKRTQAEFTRGTFRVRGDVIDIFPAHYEDRAWRVNLFGDTIETIEEFDPLTG 61
           IADLVALQYKRT A+FTRGTFRVRGDVIDIFPAHYEDRAWRVNLFGD +E+IEEFDPLTG
Sbjct: 381 IADLVALQYKRTSADFTRGTFRVRGDVIDIFPAHYEDRAWRVNLFGDEVESIEEFDPLTG 440

Query: 62  HKQDELEFIKMYANSHYVTPRPTLVQAIKSIKSELKQRLDQLNDQGRLLEAQRLEQRTTF 121
           HKQDEL+FIK+Y+NSHYVTPRPTLVQAIKSIK ELKQRLDQL+ QGRLLEAQRLEQRTTF
Sbjct: 441 HKQDELDFIKVYSNSHYVTPRPTLVQAIKSIKVELKQRLDQLHAQGRLLEAQRLEQRTTF 500

Query: 122 DLEMMEATGSCAGIENYSRYLTG 144
           DLEMMEATGSCAGIENYSRYLTG
Sbjct: 501 DLEMMEATGSCAGIENYSRYLTG 523