BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0040.p (336 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAF65473.1|AF253311_1 UDP-galactose 4-epimerase [Bradyrhizobi... 663 0.0 ref|NP_772571.1| UDP-galactose 4-epimerase [Bradyrhizobium japon... 574 e-162 ref|YP_531308.1| UDP-glucose 4-epimerase [Rhodopseudomonas palus... 573 e-161 ref|ZP_07025039.1| UDP-glucose 4-epimerase [Afipia sp. 1NLS2] >g... 570 e-160 ref|ZP_08630769.1| UDP-glucose 4-epimerase [Bradyrhizobiaceae ba... 567 e-160 >gb|AAF65473.1|AF253311_1 UDP-galactose 4-epimerase [Bradyrhizobium japonicum] Length = 337 Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/337 (97%), Positives = 331/337 (98%), Gaps = 1/337 (0%) Query: 1 MTVLVTGGAGYIGSHMVHALVDAGESVVVIDNLSTGFSAFLPEGVPLFIGDAGDENLVEG 60 MTVLVTGGAGYIGSHMVHALVDAGESVVVIDNLSTGFSAFLPEGVPLFIGDAGDENLVEG Sbjct: 1 MTVLVTGGAGYIGSHMVHALVDAGESVVVIDNLSTGFSAFLPEGVPLFIGDAGDENLVEG 60 Query: 61 VIAQHGIDSIIHFAGSVVVPDSMRDPLGYYRNNTMTTRSLLNAA-XGGVSRFIFSSTAAV 119 VIAQHGIDSIIHFAGSVVVPDSMRDPLGYYRNNTMTT SLLNAA GGVSRFIFSSTAAV Sbjct: 61 VIAQHGIDSIIHFAGSVVVPDSMRDPLGYYRNNTMTTGSLLNAAVKGGVSRFIFSSTAAV 120 Query: 120 YGNPDQVPVPEIAPTRPLSPYGSSKLMTEIMLHDVASAHGMSYVVLRYFNVAGADPKGRA 179 YGNPD+VPVPEIAPTRPLSPYGSSKLMTEIMLHDVASAHGMSYVVLRYFNVAGADPKGR Sbjct: 121 YGNPDRVPVPEIAPTRPLSPYGSSKLMTEIMLHDVASAHGMSYVVLRYFNVAGADPKGRV 180 Query: 180 GLATIGATHLLKIAVEAATGQRAKIDVFGTDYPTQDGSCIRDFIHVSDLVEAHRSALSYL 239 GLAT GATHLLKIAVEAATGQRAKIDVFGTDYPTQDGSCIRDFIHVSDLVEAHR+ALSYL Sbjct: 181 GLATTGATHLLKIAVEAATGQRAKIDVFGTDYPTQDGSCIRDFIHVSDLVEAHRAALSYL 240 Query: 240 RAGGQSVTMNCGYGRGYSVLETIEAVRRVSMRNFAVAYAARRPGDIMTMVADTTRICSLL 299 RAGGQSVT+NCGYGRGYSVLETIEAVRRVSMRNFAVAYAARRPGDIMTMVADTTRI SLL Sbjct: 241 RAGGQSVTLNCGYGRGYSVLETIEAVRRVSMRNFAVAYAARRPGDIMTMVADTTRIRSLL 300 Query: 300 DWTPRYDDLETIASHALAWEEKLFRERAGSARQAESA 336 DWTPR+DDLETIASHALAWEEKLFRERAGSARQAESA Sbjct: 301 DWTPRFDDLETIASHALAWEEKLFRERAGSARQAESA 337 >ref|NP_772571.1| UDP-galactose 4-epimerase [Bradyrhizobium japonicum USDA 110] dbj|BAC51196.1| UDP-galactose 4-epimerase [Bradyrhizobium japonicum USDA 110] Length = 340 Score = 574 bits (1480), Expect = e-162, Method: Compositional matrix adjust. Identities = 281/337 (83%), Positives = 304/337 (90%), Gaps = 1/337 (0%) Query: 1 MTVLVTGGAGYIGSHMVHALVDAGESVVVIDNLSTGFSAFLPEGVPLFIGDAGDENLVEG 60 MTVLVTGGAGYIGSH V AL +AGE VVVID+LSTGFSA+LPEGVPLFIGDAGDENL+EG Sbjct: 4 MTVLVTGGAGYIGSHTVLALAEAGEDVVVIDDLSTGFSAYLPEGVPLFIGDAGDENLLEG 63 Query: 61 VIAQHGIDSIIHFAGSVVVPDSMRDPLGYYRNNTMTTRSLLNAAXG-GVSRFIFSSTAAV 119 VIAQH I+SIIHFAGSVVVPDSMRDPLGYYRNN MT R+LLN A G+ RFIFSSTAAV Sbjct: 64 VIAQHNIESIIHFAGSVVVPDSMRDPLGYYRNNFMTARNLLNVAVKRGIGRFIFSSTAAV 123 Query: 120 YGNPDQVPVPEIAPTRPLSPYGSSKLMTEIMLHDVASAHGMSYVVLRYFNVAGADPKGRA 179 YG+PDQVPVPE APTRPLSPYGSSKLMTEIMLHDVA+A+GM YV LRYFNVAGADP+ R Sbjct: 124 YGDPDQVPVPEHAPTRPLSPYGSSKLMTEIMLHDVAAAYGMQYVTLRYFNVAGADPQARI 183 Query: 180 GLATIGATHLLKIAVEAATGQRAKIDVFGTDYPTQDGSCIRDFIHVSDLVEAHRSALSYL 239 GLAT+GATHLLKIAVEAATGQRAKIDVFGTDYPT DGSCIRDFIHV+DL +AHRSAL+YL Sbjct: 184 GLATVGATHLLKIAVEAATGQRAKIDVFGTDYPTPDGSCIRDFIHVTDLSQAHRSALAYL 243 Query: 240 RAGGQSVTMNCGYGRGYSVLETIEAVRRVSMRNFAVAYAARRPGDIMTMVADTTRICSLL 299 R GG S T+NCGYGRGYSVLETI+AVRRVS R+FAV YA RRPGDIMTMVADT+RI LL Sbjct: 244 RNGGASTTLNCGYGRGYSVLETIDAVRRVSGRSFAVQYAPRRPGDIMTMVADTSRIRGLL 303 Query: 300 DWTPRYDDLETIASHALAWEEKLFRERAGSARQAESA 336 DW P+YDDLETIA+HALAWE+KL+RER G R A SA Sbjct: 304 DWKPQYDDLETIAAHALAWEDKLYRERHGELRHAVSA 340 >ref|YP_531308.1| UDP-glucose 4-epimerase [Rhodopseudomonas palustris BisB18] gb|ABD86989.1| UDP-galactose 4-epimerase [Rhodopseudomonas palustris BisB18] Length = 337 Score = 573 bits (1478), Expect = e-161, Method: Compositional matrix adjust. Identities = 280/337 (83%), Positives = 304/337 (90%), Gaps = 1/337 (0%) Query: 1 MTVLVTGGAGYIGSHMVHALVDAGESVVVIDNLSTGFSAFLPEGVPLFIGDAGDENLVEG 60 MTVLVTGGAGYIGSHMV ALV+AGE+VVVIDNLS+GFSA LP+GVPLFIGDAGDENLVEG Sbjct: 1 MTVLVTGGAGYIGSHMVLALVEAGETVVVIDNLSSGFSAMLPQGVPLFIGDAGDENLVEG 60 Query: 61 VIAQHGIDSIIHFAGSVVVPDSMRDPLGYYRNNTMTTRSLLNAAXG-GVSRFIFSSTAAV 119 VIA HG+ +IIHFAGSVVVP S+RDPLGYY NNTMTTR+LL+ A GV RFIFSSTAAV Sbjct: 61 VIAAHGVSAIIHFAGSVVVPASLRDPLGYYHNNTMTTRNLLSVAVKCGVRRFIFSSTAAV 120 Query: 120 YGNPDQVPVPEIAPTRPLSPYGSSKLMTEIMLHDVASAHGMSYVVLRYFNVAGADPKGRA 179 YGNPDQVPVPE APTRPLSPYGSSKLM+EIMLHD A+AHGM+YVVLRYFNVAGADP+ R Sbjct: 121 YGNPDQVPVPEHAPTRPLSPYGSSKLMSEIMLHDTAAAHGMNYVVLRYFNVAGADPQARI 180 Query: 180 GLATIGATHLLKIAVEAATGQRAKIDVFGTDYPTQDGSCIRDFIHVSDLVEAHRSALSYL 239 GLAT+GATHLLKIAVEAATGQRAKIDVFG DYPT+DGSCIRDFIHVSDL +AHR+AL+YL Sbjct: 181 GLATVGATHLLKIAVEAATGQRAKIDVFGADYPTKDGSCIRDFIHVSDLAQAHRAALAYL 240 Query: 240 RAGGQSVTMNCGYGRGYSVLETIEAVRRVSMRNFAVAYAARRPGDIMTMVADTTRICSLL 299 R GG VT+NCGYGRG SVLETIEAVRRVS RNFAV AARRPGDIMTMVADTTRI + L Sbjct: 241 RQGGAPVTLNCGYGRGTSVLETIEAVRRVSGRNFAVQTAARRPGDIMTMVADTTRIRATL 300 Query: 300 DWTPRYDDLETIASHALAWEEKLFRERAGSARQAESA 336 DWTPRYDDL+TI +HALAWE+KL RER G + A SA Sbjct: 301 DWTPRYDDLDTIVAHALAWEKKLLRERQGPLQHALSA 337 >ref|ZP_07025039.1| UDP-glucose 4-epimerase [Afipia sp. 1NLS2] gb|EFI52181.1| UDP-glucose 4-epimerase [Afipia sp. 1NLS2] Length = 345 Score = 570 bits (1470), Expect = e-160, Method: Compositional matrix adjust. Identities = 278/337 (82%), Positives = 302/337 (89%), Gaps = 1/337 (0%) Query: 1 MTVLVTGGAGYIGSHMVHALVDAGESVVVIDNLSTGFSAFLPEGVPLFIGDAGDENLVEG 60 MTVLVTGGAGYIGSH V ALV++G SVVVIDNLSTGFS LPEGVPLFIGDA DENLVEG Sbjct: 9 MTVLVTGGAGYIGSHTVLALVESGASVVVIDNLSTGFSTALPEGVPLFIGDAADENLVEG 68 Query: 61 VIAQHGIDSIIHFAGSVVVPDSMRDPLGYYRNNTMTTRSLLNAA-XGGVSRFIFSSTAAV 119 VIA HGI SIIHFAGSVVVPDSMRDPL YYRNNTMTTR+LLNAA G V FIFSSTAAV Sbjct: 69 VIAAHGITSIIHFAGSVVVPDSMRDPLAYYRNNTMTTRNLLNAAIKGQVKNFIFSSTAAV 128 Query: 120 YGNPDQVPVPEIAPTRPLSPYGSSKLMTEIMLHDVASAHGMSYVVLRYFNVAGADPKGRA 179 YGNP+Q+PVPEIAPTRPLSPYGSSKLMTEIMLHDVA+AH ++YVVLRYFNVAGADP+ R Sbjct: 129 YGNPEQMPVPEIAPTRPLSPYGSSKLMTEIMLHDVATAHDLNYVVLRYFNVAGADPQARI 188 Query: 180 GLATIGATHLLKIAVEAATGQRAKIDVFGTDYPTQDGSCIRDFIHVSDLVEAHRSALSYL 239 GL T GATHLLKIAVEAATGQRAKIDVFGTDYPT DGSCIRDFIHVSDL +AH +ALSYL Sbjct: 189 GLQTAGATHLLKIAVEAATGQRAKIDVFGTDYPTPDGSCIRDFIHVSDLAQAHLAALSYL 248 Query: 240 RAGGQSVTMNCGYGRGYSVLETIEAVRRVSMRNFAVAYAARRPGDIMTMVADTTRICSLL 299 GG+SVT+NCGYGRGYSVLETIEAVRRVS RNFAV + RRPGDIMTM+ADTTRI ++L Sbjct: 249 AQGGESVTLNCGYGRGYSVLETIEAVRRVSGRNFAVQMSPRRPGDIMTMIADTTRINAML 308 Query: 300 DWTPRYDDLETIASHALAWEEKLFRERAGSARQAESA 336 DWTPRYDDL+TIA+HALAWEEKL ++R + ++A A Sbjct: 309 DWTPRYDDLDTIAAHALAWEEKLLQDRLANRQEAVPA 345 >ref|ZP_08630769.1| UDP-glucose 4-epimerase [Bradyrhizobiaceae bacterium SG-6C] gb|EGP06623.1| UDP-glucose 4-epimerase [Bradyrhizobiaceae bacterium SG-6C] Length = 410 Score = 567 bits (1462), Expect = e-160, Method: Compositional matrix adjust. Identities = 278/337 (82%), Positives = 295/337 (87%), Gaps = 1/337 (0%) Query: 1 MTVLVTGGAGYIGSHMVHALVDAGESVVVIDNLSTGFSAFLPEGVPLFIGDAGDENLVEG 60 MT+LVTGGAGYIGSH V ALVDAGESVVV+DNLSTGFS FLPEGVPLFIGD DENLVEG Sbjct: 74 MTILVTGGAGYIGSHTVRALVDAGESVVVVDNLSTGFSQFLPEGVPLFIGDVADENLVEG 133 Query: 61 VIAQHGIDSIIHFAGSVVVPDSMRDPLGYYRNNTMTTRSLLNAAXG-GVSRFIFSSTAAV 119 VIA H +DSIIHFAGSVVVPDSMRDPLGYYRNNTMTTR+LLNAA +SRFIFSSTAAV Sbjct: 134 VIAAHNVDSIIHFAGSVVVPDSMRDPLGYYRNNTMTTRNLLNAAVKCNISRFIFSSTAAV 193 Query: 120 YGNPDQVPVPEIAPTRPLSPYGSSKLMTEIMLHDVASAHGMSYVVLRYFNVAGADPKGRA 179 YGNPD+ PV E APTRPLSPYGSSKLMTEIMLHDVASAHGM YVVLRYFNVAGADP+ R Sbjct: 194 YGNPDRTPVAEEAPTRPLSPYGSSKLMTEIMLHDVASAHGMHYVVLRYFNVAGADPQARI 253 Query: 180 GLATIGATHLLKIAVEAATGQRAKIDVFGTDYPTQDGSCIRDFIHVSDLVEAHRSALSYL 239 GLAT+GATHLLKIAVEAATGQRAKIDV+GTDYPT DGSC+RDFIHV+DL EAHR+AL YL Sbjct: 254 GLATVGATHLLKIAVEAATGQRAKIDVYGTDYPTVDGSCVRDFIHVADLAEAHRAALRYL 313 Query: 240 RAGGQSVTMNCGYGRGYSVLETIEAVRRVSMRNFAVAYAARRPGDIMTMVADTTRICSLL 299 GG S T+NCGYGRGYSVLETIEAVRR S RNFAV YA RRPGDIMTM+ADT RI + L Sbjct: 314 EQGGPSATLNCGYGRGYSVLETIEAVRRASGRNFAVQYAERRPGDIMTMIADTGRIRATL 373 Query: 300 DWTPRYDDLETIASHALAWEEKLFRERAGSARQAESA 336 DWTP+YDDL+TIA HAL WEEKL ER R A A Sbjct: 374 DWTPQYDDLDTIARHALGWEEKLLLERQQDHRHAVPA 410