BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0038.p         (101 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_772572.1| ABC transporter [Bradyrhizobium japonicum USDA ...    70   1e-10
ref|ZP_01045973.1| ABC transporter, transmembrane region [Nitrob...    67   1e-09
ref|YP_317678.1| ABC transporter, transmembrane region [Nitrobac...    67   1e-09
ref|YP_531307.1| ABC transporter-like protein [Rhodopseudomonas ...    60   8e-08
ref|YP_001207116.1| ABC transporter permease/ATP-binding protein...    60   1e-07

>ref|NP_772572.1| ABC transporter [Bradyrhizobium japonicum USDA 110]
 dbj|BAC51197.1| ABC transporter HlyB/MsbA family [Bradyrhizobium japonicum USDA
           110]
          Length = 600

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 51/133 (38%), Positives = 57/133 (42%), Gaps = 35/133 (26%)

Query: 1   MSFPLGYXHPARR------GHCRARFGVREAGAGS------DRASLPGPHHDRDRAPPAH 48
           MSFPLGY  P         G  R R  V  A   +      D A+         +   A 
Sbjct: 471 MSFPLGYDTPVGEHGTQLSGGQRQRIAVARALVKNAPIILLDEATAALDSESEKQVQEAI 530

Query: 49  HHACRCDPG--------------------XGEIVERGRHEELLRRGGRYASFFRLQHHHD 88
            H CR                         GEIVE+GRH+ELLRR GRYASFFRLQHH  
Sbjct: 531 EHLCRNRTTIVIAHRLHTIMHADSILVVEGGEIVEQGRHDELLRRSGRYASFFRLQHHDA 590

Query: 89  PSPLALAPISATG 101
            +   LAPISAT 
Sbjct: 591 GT---LAPISATA 600


>ref|ZP_01045973.1| ABC transporter, transmembrane region [Nitrobacter sp. Nb-311A]
 gb|EAQ36057.1| ABC transporter, transmembrane region [Nitrobacter sp. Nb-311A]
          Length = 602

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/133 (36%), Positives = 57/133 (42%), Gaps = 33/133 (24%)

Query: 1   MSFPLGYXHPA------RRGHCRARFGVREAGAGS------DRASLPGPHHDRDRAPPAH 48
           MSFPLGY  P         G  R R  V  A          D A+         +   A 
Sbjct: 471 MSFPLGYDTPVGEHGTQLSGGQRQRIAVARALIKDAPIILLDEATAALDSESEKQVQEAI 530

Query: 49  HHACR--------------------CDPGXGEIVERGRHEELLRRGGRYASFFRLQHHHD 88
            H CR                         GE+VE GRH++LLR GGRYASFFRLQ H +
Sbjct: 531 EHLCRNRTTIVIAHRLHTIMHADAILVVENGEVVEHGRHDDLLRSGGRYASFFRLQ-HRE 589

Query: 89  PSPLALAPISATG 101
            +PL LAP+SA+ 
Sbjct: 590 TAPLTLAPLSASA 602


>ref|YP_317678.1| ABC transporter, transmembrane region [Nitrobacter winogradskyi
           Nb-255]
 gb|ABA04326.1| ABC transporter, transmembrane region [Nitrobacter winogradskyi
           Nb-255]
          Length = 602

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/131 (36%), Positives = 56/131 (42%), Gaps = 33/131 (25%)

Query: 3   FPLGYXHPA------RRGHCRARFGVREAGAGS------DRASLPGPHHDRDRAPPAHHH 50
           FPLGY  P         G  R R  V  A          D A+         +   A  H
Sbjct: 473 FPLGYDTPVGEHGTQLSGGQRQRIAVARALIKDAPIILLDEATAALDSESEKQVQEAIEH 532

Query: 51  ACR--------------------CDPGXGEIVERGRHEELLRRGGRYASFFRLQHHHDPS 90
            CR                         GEIVERGRH++LLR GGRYASFFRLQ H + +
Sbjct: 533 LCRNRTTIVIAHRLHTIMHADAILVVENGEIVERGRHDDLLRSGGRYASFFRLQ-HRETA 591

Query: 91  PLALAPISATG 101
           PL LAP+SA+ 
Sbjct: 592 PLTLAPLSASA 602


>ref|YP_531307.1| ABC transporter-like protein [Rhodopseudomonas palustris BisB18]
 gb|ABD86988.1| ABC transporter related [Rhodopseudomonas palustris BisB18]
          Length = 600

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/43 (67%), Positives = 35/43 (81%), Gaps = 3/43 (6%)

Query: 59  GEIVERGRHEELLRRGGRYASFFRLQHHHDPSPLALAPISATG 101
           GEIVERGRH++LLRR GRYASFFRLQ H D +P  + PI+A+ 
Sbjct: 561 GEIVERGRHDDLLRRDGRYASFFRLQ-HRDATP--VLPIAASA 600


>ref|YP_001207116.1| ABC transporter permease/ATP-binding protein [Bradyrhizobium sp.
           ORS 278]
 emb|CAL78899.1| Putative ABC transporter (permease and ATP-binding protein)
           [Bradyrhizobium sp. ORS 278]
          Length = 601

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/42 (69%), Positives = 34/42 (80%), Gaps = 2/42 (4%)

Query: 59  GEIVERGRHEELLRRGGRYASFFRLQHHHDPSPLALAPISAT 100
           GEIVERGRH++LLRRGGRYASFFRLQ   D  P  + P++AT
Sbjct: 561 GEIVERGRHDDLLRRGGRYASFFRLQ-QRDMGP-NVIPMTAT 600