BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0023.p (273 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769458.1| hypothetical protein blr2818 [Bradyrhizobium ja... 500 e-140 ref|YP_001204547.1| putative UDP-glucose 4-epimerase [Bradyrhizo... 433 e-119 ref|YP_001238868.1| putative UDP-glucose 4-epimerase [Bradyrhizo... 425 e-117 ref|ZP_02188817.1| hypothetical protein BAL199_27846 [alpha prot... 245 5e-63 ref|YP_002542106.1| hypothetical protein Arad_9474 [Agrobacteriu... 235 7e-60 >ref|NP_769458.1| hypothetical protein blr2818 [Bradyrhizobium japonicum USDA 110] dbj|BAC48083.1| blr2818 [Bradyrhizobium japonicum USDA 110] Length = 274 Score = 500 bits (1288), Expect = e-140, Method: Compositional matrix adjust. Identities = 239/273 (87%), Positives = 253/273 (92%) Query: 1 MPRILMTGASGGIGTSLRKLLPPIYPDLLLSDIKQPSDLGGYEKFKAADLADLAEVEAIC 60 MPRILMTGASGGIGTSLRKLLPPIYPDLLLSDIK P+DLG EKFKAADLADLA+ EAIC Sbjct: 1 MPRILMTGASGGIGTSLRKLLPPIYPDLLLSDIKPPADLGANEKFKAADLADLAQCEAIC 60 Query: 61 EGVDGILHFGGYSVEGPWDAILQSNIIGCYNLFEAARKKGVKRVIFASSNHAVGFYPRHH 120 EGVDGI+HFGGYSVEGPWD ILQ+NIIG YNLFEAA +KGVKRV+FASSNHAVGFYPRHH Sbjct: 61 EGVDGIIHFGGYSVEGPWDDILQANIIGGYNLFEAAYRKGVKRVVFASSNHAVGFYPRHH 120 Query: 121 RIGTDVTARPDSRYGVSKVFGEGVGALYADKHGIKVTCLRIGNFGEAPLDHRRLSIWLKP 180 +IGTDVT RPD RYGVSKVFGE VGALYADKHG+KVTCLRIGNFG+ PLD RRLSIWLKP Sbjct: 121 KIGTDVTPRPDGRYGVSKVFGEAVGALYADKHGLKVTCLRIGNFGDLPLDQRRLSIWLKP 180 Query: 181 EDLVQLCRIGLEHPDIHFEVLYGASYNERSWWDNHRAYDLGYRPTGRAEDFREHAMAEQA 240 +DLVQLCRIGLEHPDIHFEV YGAS NER+WWDNHRAY+ GYRPTGRAEDFREHAMAEQA Sbjct: 181 DDLVQLCRIGLEHPDIHFEVFYGASLNERAWWDNHRAYEFGYRPTGRAEDFREHAMAEQA 240 Query: 241 KLPPDPVGDYYQGGAFCSMEFDGDKERVIDWKK 273 KL PDPVGD+YQGGAFCS EFDGD R+IDW K Sbjct: 241 KLKPDPVGDHYQGGAFCSNEFDGDASRIIDWTK 273 >ref|YP_001204547.1| putative UDP-glucose 4-epimerase [Bradyrhizobium sp. ORS 278] emb|CAL76310.1| putative UDP-glucose 4-epimerase [Bradyrhizobium sp. ORS 278] Length = 244 Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust. Identities = 202/243 (83%), Positives = 221/243 (90%) Query: 29 LLSDIKQPSDLGGYEKFKAADLADLAEVEAICEGVDGILHFGGYSVEGPWDAILQSNIIG 88 +LSD+K P+DL E FKAADLADLA+VEA+CEGVDGI+HFGGYSVEGPW+ ILQ+NIIG Sbjct: 1 MLSDLKPPADLSSQETFKAADLADLAQVEALCEGVDGIIHFGGYSVEGPWNDILQANIIG 60 Query: 89 CYNLFEAARKKGVKRVIFASSNHAVGFYPRHHRIGTDVTARPDSRYGVSKVFGEGVGALY 148 YNLFEAAR+KGVKRV+FASSNHAVGFYPRH +I DV RPD RYGVSKVFGE VG+LY Sbjct: 61 GYNLFEAARRKGVKRVVFASSNHAVGFYPRHRKIDNDVQPRPDGRYGVSKVFGEAVGSLY 120 Query: 149 ADKHGIKVTCLRIGNFGEAPLDHRRLSIWLKPEDLVQLCRIGLEHPDIHFEVLYGASYNE 208 ADKHG+KVTCLRIGNFGE PLD RRLSIWLKPEDLVQLCRIGLEHPDIHFEVLYGAS NE Sbjct: 121 ADKHGLKVTCLRIGNFGERPLDRRRLSIWLKPEDLVQLCRIGLEHPDIHFEVLYGASLNE 180 Query: 209 RSWWDNHRAYDLGYRPTGRAEDFREHAMAEQAKLPPDPVGDYYQGGAFCSMEFDGDKERV 268 R+WWDN RAYDLGYRPTGRAEDFREHA+AEQAKLP DP+GDY+QGGAFC+ EFDGD R+ Sbjct: 181 RAWWDNQRAYDLGYRPTGRAEDFREHALAEQAKLPADPIGDYFQGGAFCTTEFDGDTSRI 240 Query: 269 IDW 271 IDW Sbjct: 241 IDW 243 >ref|YP_001238868.1| putative UDP-glucose 4-epimerase [Bradyrhizobium sp. BTAi1] gb|ABQ34962.1| putative UDP-glucose 4-epimerase [Bradyrhizobium sp. BTAi1] Length = 244 Score = 425 bits (1092), Expect = e-117, Method: Compositional matrix adjust. Identities = 194/243 (79%), Positives = 220/243 (90%) Query: 29 LLSDIKQPSDLGGYEKFKAADLADLAEVEAICEGVDGILHFGGYSVEGPWDAILQSNIIG 88 +LSD++ P+DL E FKAADLADL++VEA+CEGVDGI+HFGGYSVEGPW+ ILQ+NIIG Sbjct: 1 MLSDLRPPADLSSQETFKAADLADLSQVEALCEGVDGIIHFGGYSVEGPWNDILQANIIG 60 Query: 89 CYNLFEAARKKGVKRVIFASSNHAVGFYPRHHRIGTDVTARPDSRYGVSKVFGEGVGALY 148 YNLFEAAR+KGVKR++FASSNHAVGFYPRH +I DV RPD RYGVSKVFGE +G+LY Sbjct: 61 GYNLFEAARRKGVKRIVFASSNHAVGFYPRHRKIDNDVQPRPDGRYGVSKVFGEALGSLY 120 Query: 149 ADKHGIKVTCLRIGNFGEAPLDHRRLSIWLKPEDLVQLCRIGLEHPDIHFEVLYGASYNE 208 ADKHG+KVTC+RIGNFG+ PLD RRLSIWLKP+DLVQLCRIGLEHPDIHFEVLYGAS NE Sbjct: 121 ADKHGLKVTCIRIGNFGDKPLDRRRLSIWLKPDDLVQLCRIGLEHPDIHFEVLYGASLNE 180 Query: 209 RSWWDNHRAYDLGYRPTGRAEDFREHAMAEQAKLPPDPVGDYYQGGAFCSMEFDGDKERV 268 R+WWDN RAYDLGYRPTGRAEDFREHA+AEQAKLP DP+GDY+QGG FC+ EFDGD R+ Sbjct: 181 RAWWDNQRAYDLGYRPTGRAEDFREHALAEQAKLPADPIGDYFQGGTFCTTEFDGDTSRI 240 Query: 269 IDW 271 IDW Sbjct: 241 IDW 243 >ref|ZP_02188817.1| hypothetical protein BAL199_27846 [alpha proteobacterium BAL199] gb|EDP64645.1| hypothetical protein BAL199_27846 [alpha proteobacterium BAL199] Length = 267 Score = 245 bits (626), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 131/268 (48%), Positives = 165/268 (61%), Gaps = 4/268 (1%) Query: 1 MPR-ILMTGASGGIGTSLRKLLPPIYPDLLLSDIKQPSDLGGYEKFKAADLADLAEVEAI 59 MP+ +L+TGA+GG+ LR+ L Y L+LSD+ DL +E F+ ADL DL + + Sbjct: 1 MPKTVLITGAAGGVAGHLRRELGDAY-RLVLSDLHPIKDLAPHEVFRGADLGDLEALRRL 59 Query: 60 CEGVDGILHFGGYSVEGPWDAILQSNIIGCYNLFEAARKKGVKRVIFASSNHAVGFYPRH 119 GVD I+H GG S+EGPW +L NI+G Y LFEAAR +GV RV+FASS HAVGFY Sbjct: 60 MPGVDAIVHLGGQSIEGPWSDVLDRNIVGAYKLFEAARLEGVTRVVFASSCHAVGFYRLD 119 Query: 120 HRIGTDVTARPDSRYGVSKVFGEGVGALYADKHGIKVTCLRIGNFGEAPLDHRRLSIWLK 179 I D +PD RYGVSKVFGE +G+LYA K+G V LRIGN G P+D RRL+ WL Sbjct: 120 ETIEADAYFKPDGRYGVSKVFGEALGSLYAHKYGFDVLALRIGNVGPRPVDRRRLTSWLS 179 Query: 180 PEDLVQLCRIGLEHPDIHFEVLYGASYNERSWWDNHRAYDLGYRPTGRAEDFREHAMAEQ 239 P DL L R+G+E PD+ +EV++G S N S W N A LGY P A D+ E Q Sbjct: 180 PRDLAALVRLGIEKPDLGYEVVFGMSRNTGSCWVNSTADRLGYVPLDDAADYAEE--INQ 237 Query: 240 AKLPPDPVGDYYQGGAFCSMEFDGDKER 267 P+ + YQGG F E GD + Sbjct: 238 KPFDPNAAANIYQGGPFVEAEAGGDPAK 265 >ref|YP_002542106.1| hypothetical protein Arad_9474 [Agrobacterium radiobacter K84] gb|ACM30509.1| conserved hypothetical protein [Agrobacterium radiobacter K84] Length = 265 Score = 235 bits (599), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 119/258 (46%), Positives = 159/258 (61%) Query: 1 MPRILMTGASGGIGTSLRKLLPPIYPDLLLSDIKQPSDLGGYEKFKAADLADLAEVEAIC 60 + +LMTGA+GG+G +LR LL I +++LSDI DL E+F DLAD + V+A+ Sbjct: 2 LKTLLMTGAAGGVGQALRPLLSEIAENVVLSDIVAVDDLRPNERFVGCDLADRSGVDALV 61 Query: 61 EGVDGILHFGGYSVEGPWDAILQSNIIGCYNLFEAARKKGVKRVIFASSNHAVGFYPRHH 120 +GVDGI+H GG S E +D I+Q NIIG YNL+EAAR+ G+ R+IFASSNH +G+Y R Sbjct: 62 QGVDGIIHLGGVSTEKAFDLIMQGNIIGLYNLYEAARQAGMPRIIFASSNHTIGYYRRDE 121 Query: 121 RIGTDVTARPDSRYGVSKVFGEGVGALYADKHGIKVTCLRIGNFGEAPLDHRRLSIWLKP 180 RI + V RPDS YGVSKV+GE V +LY DK G + +RIG+ P + R L+ W Sbjct: 122 RIDSTVPTRPDSLYGVSKVYGEAVASLYFDKFGQETLSVRIGSCFPEPRNPRMLATWFSV 181 Query: 181 EDLVQLCRIGLEHPDIHFEVLYGASYNERSWWDNHRAYDLGYRPTGRAEDFREHAMAEQA 240 D + LC E + ++YGAS N+ WWDN A LG++P A +RE +A A Sbjct: 182 RDFLSLCGRAFETSRLGHTIVYGASNNDEQWWDNRNAAFLGWKPQDSAAAWREQILANTA 241 Query: 241 KLPPDPVGDYYQGGAFCS 258 P YQGG F + Sbjct: 242 PEDPTDPAVIYQGGGFAA 259