BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0018.p         (55 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_769467.1| hypothetical protein blr2827 [Bradyrhizobium ja...    94   7e-18
ref|ZP_01227605.1| putative periplasmic substrate-binding protei...    38   0.40 
ref|YP_004873960.1| TRAP-type transport system component [Taylor...    37   0.73 

>ref|NP_769467.1| hypothetical protein blr2827 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC48092.1| blr2827 [Bradyrhizobium japonicum USDA 110]
          Length = 331

 Score = 94.0 bits (232), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 45/55 (81%), Positives = 51/55 (92%)

Query: 1   LEKNAAAKLKSFGVKVVEDVDKKSFTAIADPYLDKLAKDLGPHAEKIKNLIRAVN 55
           LE+ AA KLK  GVK+V++VDKKSFTAIADPYLDKLAK+LGPHAEKIKNLIR+VN
Sbjct: 277 LERTAADKLKKMGVKIVDNVDKKSFTAIADPYLDKLAKELGPHAEKIKNLIRSVN 331


>ref|ZP_01227605.1| putative periplasmic substrate-binding protein, TRAP-type
           C4-dicarboxylate transport system [Aurantimonas
           manganoxydans SI85-9A1]
 gb|EAS49485.1| putative periplasmic substrate-binding protein, TRAP-type
           C4-dicarboxylate transport system [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 342

 Score = 38.1 bits (87), Expect = 0.40,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 24/40 (60%)

Query: 2   EKNAAAKLKSFGVKVVEDVDKKSFTAIADPYLDKLAKDLG 41
           E N  A ++  G++V+EDVDKK+F     P  D+  K+ G
Sbjct: 291 ETNGVATMRENGMEVIEDVDKKAFQDAVQPTYDRYGKEYG 330


>ref|YP_004873960.1| TRAP-type transport system component [Taylorella asinigenitalis
           MCE3]
 gb|AEP35937.1| TRAP-type transport system, periplasmic component [Taylorella
           asinigenitalis MCE3]
          Length = 317

 Score = 37.4 bits (85), Expect = 0.73,   Method: Composition-based stats.
 Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 3/39 (7%)

Query: 1   LEKNAAAKLKSFGVKVVEDVDKKSFTAIA---DPYLDKL 36
           +E +  +KLK  G++VVEDVDK+SF A A   DPY  KL
Sbjct: 266 MESDGLSKLKEEGMEVVEDVDKESFAAHARSDDPYYFKL 304