BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0016.p (446 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769469.1| hypothetical protein blr2829 [Bradyrhizobium ja... 779 0.0 ref|YP_176849.1| C4-dicarboxylate transport system permease larg... 243 5e-62 ref|ZP_02187811.1| C4-dicarboxylate transport system, permease p... 240 5e-61 ref|YP_001178580.1| TRAP dicarboxylate transporter, DctM subunit... 237 3e-60 ref|YP_004461267.1| TRAP dicarboxylate transporter subunit DctM ... 236 5e-60 >ref|NP_769469.1| hypothetical protein blr2829 [Bradyrhizobium japonicum USDA 110] dbj|BAC48094.1| blr2829 [Bradyrhizobium japonicum USDA 110] Length = 446 Score = 779 bits (2012), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/446 (93%), Positives = 428/446 (95%) Query: 1 VSAPVVLALMSFCFLFFGYLGVPVPFSLMAGVFVGAVLSDVSLAAIIQKIFDGVDSEALL 60 +SAPVVLALMS CFL FGYLGVPVPFSLMAGVF+GA+LSDVSLAAIIQKIFDGVDSEALL Sbjct: 1 MSAPVVLALMSICFLSFGYLGVPVPFSLMAGVFIGAILSDVSLAAIIQKIFDGVDSEALL 60 Query: 61 AIPFFLLVGELMSSANVVVRIANLSVSLVGHIRGGLSQVVVVFSMFFSEMSGSTTADVAV 120 AIPFFLLVGELMSSANVVVRIANLSVSLVGHIRGGLSQVVVVFSMFFSEMSGSTTADVAV Sbjct: 61 AIPFFLLVGELMSSANVVVRIANLSVSLVGHIRGGLSQVVVVFSMFFSEMSGSTTADVAV 120 Query: 121 MSRALGGPMRREGYEPAFIAAIIASASTIAALVPPSITAVVYGAVGNVSIAGLFMAGVVP 180 MSRALGGPM+REGYEPAFIAAIIASASTIAALVPPSITAVVYGAVGNVSIAGLFMAGVVP Sbjct: 121 MSRALGGPMKREGYEPAFIAAIIASASTIAALVPPSITAVVYGAVGNVSIAGLFMAGVVP 180 Query: 181 GLMIGFGLMIYCYFFGPSGLRKPRAPPRQVVFAAGDAALPMMIPVILLGGILTGWFTPTE 240 GLMIG GLMIYCYFFGPSGLRKPRAP RQVVFAAGDAALP+MIPVILLGGILTGWFTPTE Sbjct: 181 GLMIGIGLMIYCYFFGPSGLRKPRAPLRQVVFAAGDAALPLMIPVILLGGILTGWFTPTE 240 Query: 241 AGVVAVAYIVIVVIPALNRGHLKKIPYDFCLAGLIFSLPLITIGAANAFGWMLAYLRGAI 300 AGVVAVA+IV+VVIPALNRGH KIPYDFCLAGLIFSLPLITIGAANAFGWMLAYLRGA Sbjct: 241 AGVVAVAWIVLVVIPALNRGHFTKIPYDFCLAGLIFSLPLITIGAANAFGWMLAYLRGAS 300 Query: 301 YIADWITSIAGNDPHLIMLLMVLLFTVVGDFIEPVPTIIIFMPLVNALTQAGDINGVHMG 360 YIA+ ITSIAG+DPHLIMLLMVLLFTVVGDFIEPVPTIIIFMPLVN LT+AGDIN VHMG Sbjct: 301 YIAELITSIAGHDPHLIMLLMVLLFTVVGDFIEPVPTIIIFMPLVNTLTEAGDINAVHMG 360 Query: 361 VVLIATLAFGLITPPYGLVLLMASKFVGISFAKALRAALPIYVVFLVTICFTIYFPKVVL 420 VVLIATLAFGLITPPYGLVLLMASKFVGISFAKALRAALPIYVVFL TI F IYFP VVL Sbjct: 361 VVLIATLAFGLITPPYGLVLLMASKFVGISFAKALRAALPIYVVFLATIAFAIYFPSVVL 420 Query: 421 WLPKQVIPESVGCFKAPGGTGYXCPN 446 WLP+ V+PESVGCFK+P GTGY CP Sbjct: 421 WLPRHVLPESVGCFKSPAGTGYICPQ 446 >ref|YP_176849.1| C4-dicarboxylate transport system permease large protein [Bacillus clausii KSM-K16] dbj|BAD65888.1| C4-dicarboxylate transport system permease large protein [Bacillus clausii KSM-K16] Length = 427 Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 155/411 (37%), Positives = 237/411 (57%), Gaps = 12/411 (2%) Query: 21 GVPVPFSLMAGVFVGAVLSD-VSLAAIIQKIFDGVDSEALLAIPFFLLVGELMSSANVVV 79 GVP+ F+L FVG L D + L ++Q +F GV+S LLA+P F+L +M+ + Sbjct: 17 GVPIAFTLGIVAFVGIWLLDAMPLQIVVQTMFAGVESFILLAVPLFILAANIMNQGQISE 76 Query: 80 RIANLSVSLVGHIRGGLSQVVVVFSMFFSEMSGSTTADVAVMSRALGGPMRREGYEPAFI 139 R+ L+VS+VGHIRGGL+Q +V SMFF +SGS AD A + + L M +EGY + Sbjct: 77 RLIQLAVSMVGHIRGGLAQANIVVSMFFGGISGSAQADTAGIGKILIPSMMKEGYSKSTA 136 Query: 140 AAIIASASTIAALVPPSITAVVYGAVGNVSIAGLFMAGVVPGLMIGFGLMIYCYFFGPSG 199 A++ST+ L+PPSI VVYG+V +VS+ +F+ G++PGL++G +M F Sbjct: 137 VGTTAASSTMGLLIPPSIPMVVYGSVTSVSVGQMFIGGIIPGLLMGVAMMALVAFVS--- 193 Query: 200 LRKPRAPPRQVVFAA--GDAAL----PMMIPVILLGGILTGWFTPTEAGVVAVAYIVIVV 253 R+ P + V A G L P++ P+I+LGGI+ G+ TPTEA ++A Y +I+ Sbjct: 194 -RRQNYPRHERVKLAEIGRQFLKCVPPLLTPLIILGGIVGGFVTPTEAAIIACLYALILA 252 Query: 254 IPALNRGHLKKIPYDFCLAGLIFSLPLITIGAANAFGWMLAYLRGAIYIADWITSIAGND 313 + K +P + SL L + A+A G + +Y R IA + S + Sbjct: 253 MFVYKTIKWKDMPEIIFDTIRLSSLTLFALATASALGRLFSYYRVPDAIAGFFDS-TFSS 311 Query: 314 PHLIMLLMVLLFTVVGDFIEPVPTIIIFMPLVNALTQAGDINGVHMGVVLIATLAFGLIT 373 L +L ++LLF VG F++ +P +I+F+P+V +Q I+ +H G+V++ LA G+IT Sbjct: 312 AGLFLLAVILLFLFVGMFLDAIPAMILFVPIVLPASQTLGIDPIHFGIVIVMCLAVGMIT 371 Query: 374 PPYGLVLLMASKFVGISFAKALRAALPIYVVFLVTICFTIYFPKVVLWLPK 424 PPYGL +L+AS +S ++++ A LP V LV I + P V LWLP Sbjct: 372 PPYGLCMLLASSIAKLSVSRSVVALLPYVAVILVAILIVAFVPAVALWLPS 422 >ref|ZP_02187811.1| C4-dicarboxylate transport system, permease protein, putative [alpha proteobacterium BAL199] gb|EDP65465.1| C4-dicarboxylate transport system, permease protein, putative [alpha proteobacterium BAL199] Length = 434 Score = 240 bits (612), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 157/423 (37%), Positives = 249/423 (58%), Gaps = 18/423 (4%) Query: 20 LGVPVPFSL-MAGVFVGAVLSDVSLAAIIQKIFDGVDSEALLAIPFFLLVGELMSSANVV 78 L +PV F+L +A V V + + +S + ++F +S LLA+PFFLL LM+SA + Sbjct: 20 LRIPVAFALGLACVPVFFLSNRLSPTLLFDQMFGSYNSFVLLAVPFFLLAANLMNSAGIT 79 Query: 79 VRIANLSVSLVGHIRGGLSQVVVVFSMFFSEMSGSTTADVAVMSRALGGPMRREGYEPAF 138 R+ +LS +LVGH+ GGL + V+ SM F+ +SGS+TAD A + L M+++GY+ +F Sbjct: 80 QRLIDLSKALVGHLPGGLGHINVMVSMLFAGISGSSTADAAGIGSLLIPQMKKQGYDASF 139 Query: 139 IAAIIASASTIAALVPPSITAVVYGAVGNVSIAGLFMAGVVPGLMIGFGLMIYCYFFGPS 198 AI A +S + ++PPSI VV+G + +VSI GLF+AGV+PG++I +M+ Y + Sbjct: 140 SVAITACSSVMGVIIPPSILMVVWGGLMSVSIGGLFLAGVLPGVLIAVSMMVLVYIY--- 196 Query: 199 GLRK-----PRAPPRQVVFAAGDAALPMMIPVILLGGILTGWFTPTEAGVVAVAYIVIVV 253 +R+ R+ ++ A +A LP+M P+I++GGI+ G+FTPTEA VVAV Y + + Sbjct: 197 AIRRGYPVYTRSSVPEIGRAIVNAILPLMTPMIIVGGIVGGFFTPTEASVVAVLYALALG 256 Query: 254 IPALNRGHLKKIPYDFCLAGLIFSLPLITIGAANAFGWMLAYLR----GAIYIADWITSI 309 + + +P + ++ L IG A+AFGW+LA+ + +A W Sbjct: 257 LFVYRTFTFQTLPKVLYESARFAAISLFCIGTASAFGWILAFFQIPKSLVTVMAGW---- 312 Query: 310 AGNDPHLIMLLMVLLFTVVGDFIEPVPTIIIFMPLVNALTQAGDINGVHMGVVLIATLAF 369 G P LL+ F +VG FI+ +P III ++ + QA I+ +H ++ + +LAF Sbjct: 313 -GTGPIETGLLVAAAFLIVGMFIDAIPAIIILGTVLFPVAQAAGIHPIHFAIIGVVSLAF 371 Query: 370 GLITPPYGLVLLMASKFVGISFAKALRAALPIYVVFLVTICFTIYFPKVVLWLPKQVIPE 429 GL+TPPYGL LL+AS I AL+ I + L + F I FP+ +L LP+ ++P+ Sbjct: 372 GLVTPPYGLCLLIASSIGQIKLIHALKDVCIILLPMLGVLLFVILFPEAILALPRWIMPK 431 Query: 430 SVG 432 +G Sbjct: 432 FIG 434 >ref|YP_001178580.1| TRAP dicarboxylate transporter, DctM subunit [Enterobacter sp. 638] gb|ABP62529.1| TRAP dicarboxylate transporter, DctM subunit [Enterobacter sp. 638] Length = 428 Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 154/411 (37%), Positives = 231/411 (56%), Gaps = 11/411 (2%) Query: 20 LGVPVPFSLMAGVFVGAVLSDVSLAAIIQKIFDGVDSEALLAIPFFLLVGELMSSANVVV 79 LG+PV F++ GA+ D+ L A++ +I GV+ LLAIPFF+L G +M+ + Sbjct: 16 LGMPVAFAVGLSAVAGALWIDLPLEALMIQITSGVNKFTLLAIPFFILAGAIMAEGGIAR 75 Query: 80 RIANLSVSLVGHIRGGLSQVVVVFSMFFSEMSGSTTADVAVMSRALGGPMRREGYEPAFI 139 R+ N + VG IRGGLS V +V S FF +SGS+ AD A + + M ++GY + Sbjct: 76 RLVNFAYIFVGFIRGGLSLVNIVASTFFGAISGSSVADTASIGSVMIPEMEKKGYPREYA 135 Query: 140 AAIIASASTIAALVPPSITAVVY--GAVGNVSIAGLFMAGVVPGLMIGFGLMIYCYFFG- 196 AA+ AS S A L+PPS +V+Y A G VSIA LF+AGV+PGL++GF LMI C F Sbjct: 136 AAVTASGSVQAILIPPSHNSVIYSLAAGGTVSIATLFIAGVLPGLLLGFCLMILCLGFAH 195 Query: 197 ----PSGLRKPRAPPRQVVFAAGDAALPMMIPVILLGGILTGWFTPTEAGVVAVAYIVIV 252 P G + P ++ F DA ++ VI+LGGIL+G FT TE+ VA + V Sbjct: 196 KRGYPKGEKIPFKQAVKIFF---DALWGLLTVVIILGGILSGIFTATESAAVACLWAFFV 252 Query: 253 VIPALNRGHLKKIPYDFCLAGLIFSLPLITIGAANAFGWMLAYLRGAIYIADWITSIAGN 312 + K++P C ++ +I IG A AFG ++ Y++ I ++ TS++ N Sbjct: 253 TMFIYRDYKWKELPKLMCRTVKTVTIVMILIGFAAAFGAVMTYMQLPTRITEFFTSLSDN 312 Query: 313 DPHLIMLLMVLLFTVVGDFIEPVPTIIIFMPLVNALTQAGDINGVHMGVVLIATLAFGLI 372 ++M L ++L ++G ++ P I+I P++ +T + I+ VH G++++ L GLI Sbjct: 313 KYVILMYLNIMLL-LIGTLMDMAPLILILTPVLLPVTNSLGIDPVHFGMIMMVNLGIGLI 371 Query: 373 TPPYGLVLLMASKFVGISFAKALRAALPIYVVFLVTICFTIYFPKVVLWLP 423 TPP G VL +AS +RA LP Y + LV + Y P + LWLP Sbjct: 372 TPPVGSVLFVASAVSKQRIETVVRAMLPFYAMLLVVLGMVTYIPAISLWLP 422 >ref|YP_004461267.1| TRAP dicarboxylate transporter subunit DctM [Tepidanaerobacter sp. Re1] gb|AEE91960.1| TRAP dicarboxylate transporter, DctM subunit [Tepidanaerobacter sp. Re1] Length = 429 Score = 236 bits (602), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 149/413 (36%), Positives = 244/413 (59%), Gaps = 6/413 (1%) Query: 21 GVPVPFSLMAGVFVGAVLSDVSLA--AIIQKIFDGVDSEALLAIPFFLLVGELMSSANVV 78 VPV FS+ F+ V S+ SL + Q+IF G+DS +LA+P F+L GELM+ + Sbjct: 17 SVPVSFSIGLSSFLLFV-SEKSLPLWVLTQRIFAGLDSFVILAVPLFILTGELMNECKIT 75 Query: 79 VRIANLSVSLVGHIRGGLSQVVVVFSMFFSEMSGSTTADVAVMSRALGGPMRREGYEPAF 138 ++ + +LVGH+RG L+QV V+ SM F+ +SGS+ AD A + L M ++GY F Sbjct: 76 DKLIDACYALVGHVRGSLAQVNVLVSMIFAGISGSSQADTAGIGSVLIPAMIKKGYSRDF 135 Query: 139 IAAIIASASTIAALVPPSITAVVYGAVGNVSIAGLFMAGVVPGLMIGFGLMIYCYFFGPS 198 A+ ++ST+ ++PPSITAVVY A N+S+ LF+ G++PG++I M CY++ Sbjct: 136 TVAVTCASSTMGVVIPPSITAVVYAASVNISVGTLFLGGIIPGILIAASQMAICYYYAVK 195 Query: 199 GL--RKPRAPPRQVVFAAGDAALPMMIPVILLGGILTGWFTPTEAGVVAVAYIVIVVIPA 256 R+ P ++ + AALP++ P+I++GGI+ G FT TEA +AV Y +++ Sbjct: 196 YDYPREESYPIKERIAIISKAALPLLTPLIIIGGIIGGVFTATEAAAIAVVYSLLLAFIV 255 Query: 257 LNRGHLKKIPYDFCLAGLIFSLPLITIGAANAFGWMLAYLRGAIYIADWITSIAGNDPHL 316 LK++ G + S+ L +G + F +++AY + +ITSI+ P L Sbjct: 256 YRNITLKQLWQILIRTGKMSSVALFCVGTSTIFSYIMAYYNVTDMLGSFITSIS-TSPVL 314 Query: 317 IMLLMVLLFTVVGDFIEPVPTIIIFMPLVNALTQAGDINGVHMGVVLIATLAFGLITPPY 376 ++ +V F V+G F++ P II+F P++ + ++ +N + +GV++I TLA GLITPPY Sbjct: 315 FLMFIVGFFIVIGTFMDATPAIIVFAPIIAPIGESLGLNPIQLGVIVIVTLALGLITPPY 374 Query: 377 GLVLLMASKFVGISFAKALRAALPIYVVFLVTICFTIYFPKVVLWLPKQVIPE 429 GL L++A++ IS KA +A + L+ I + FPK++L++P + P Sbjct: 375 GLCLMLAAQIGEISIEKAFKATFVFIIALLLVIMLLVLFPKLILFIPTKFAPN 427