BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0008.p (218 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769475.1| transcriptional regulator [Bradyrhizobium japon... 360 9e-98 ref|ZP_08405828.1| TetR family transcriptional regulator [Hylemo... 225 4e-57 ref|YP_002943780.1| TetR family transcriptional regulator [Vario... 221 7e-56 ref|YP_995423.1| TetR family transcriptional regulator [Verminep... 221 8e-56 ref|YP_004156239.1| TetR family transcriptional regulator [Vario... 218 4e-55 >ref|NP_769475.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC48100.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 272 Score = 360 bits (924), Expect = 9e-98, Method: Compositional matrix adjust. Identities = 175/200 (87%), Positives = 187/200 (93%) Query: 1 MRLRILEAAKQEFAAHGLAGARVDRIAANAGANKRMLYYHVGNKEDLYLEVLEGAYEKIR 60 MRLRILEAAKQEF+AHGLAGARVDRIAA AGANKRMLYYHVGNK++LYL VLEGAY+KIR Sbjct: 54 MRLRILEAAKQEFSAHGLAGARVDRIAAKAGANKRMLYYHVGNKDELYLAVLEGAYDKIR 113 Query: 61 AEERTLDLEHLDPPEAIGRLIDFTWNYFLRNPEFLALLNTENLAKAKHLKRSTKVKSMHS 120 +EER LDLEHLDPPEAI RLI+FTW YFLRNPEFL+LL TENLA+AKHLKRSTKVKSMHS Sbjct: 114 SEERGLDLEHLDPPEAIRRLIEFTWGYFLRNPEFLSLLQTENLARAKHLKRSTKVKSMHS 173 Query: 121 PFVEMIRTVVTRGVESGDFRVAVDPVQLYISIAGLAFFYLSNSATLSVIFGRDLLKKDAR 180 PFVEMI TVV RGVESGDF+VAVDPVQLYISIA L+FFYLSNSATLSVIFGRDLL KDA+ Sbjct: 174 PFVEMIGTVVRRGVESGDFQVAVDPVQLYISIAALSFFYLSNSATLSVIFGRDLLAKDAK 233 Query: 181 DERLEHMTALVLAALTGKST 200 DERL HM LVLAALTG+ST Sbjct: 234 DERLAHMAGLVLAALTGRST 253 >ref|ZP_08405828.1| TetR family transcriptional regulator [Hylemonella gracilis ATCC 19624] gb|EGI77044.1| TetR family transcriptional regulator [Hylemonella gracilis ATCC 19624] Length = 216 Score = 225 bits (573), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 108/191 (56%), Positives = 142/191 (74%) Query: 5 ILEAAKQEFAAHGLAGARVDRIAANAGANKRMLYYHVGNKEDLYLEVLEGAYEKIRAEER 64 IL AA+ EFA +GL GAR+DRIA AG NKR++YY+ +KE L+ VLE AY IR EER Sbjct: 23 ILMAARDEFAEYGLGGARMDRIAERAGLNKRLIYYYFEDKEKLFQAVLEQAYGNIREEER 82 Query: 65 TLDLEHLDPPEAIGRLIDFTWNYFLRNPEFLALLNTENLAKAKHLKRSTKVKSMHSPFVE 124 L L+ L P EA+ LI+FTWNY+L +PEFL LLN+ NL KA+HL+ S + ++++SP ++ Sbjct: 83 KLHLQDLTPAEAVRTLIEFTWNYYLAHPEFLTLLNSANLHKARHLQDSRQARALNSPLLD 142 Query: 125 MIRTVVTRGVESGDFRVAVDPVQLYISIAGLAFFYLSNSATLSVIFGRDLLKKDARDERL 184 ++ ++ RG G FR VDP+QLYISIAG+A+FYLSN+ TLS IFGRDL+ AR+ERL Sbjct: 143 LLAEILERGRRDGSFRGGVDPMQLYISIAGIAYFYLSNNHTLSAIFGRDLMSAKARNERL 202 Query: 185 EHMTALVLAAL 195 HMT L+L L Sbjct: 203 SHMTDLILGGL 213 >ref|YP_002943780.1| TetR family transcriptional regulator [Variovorax paradoxus S110] gb|ACS18514.1| transcriptional regulator, TetR family [Variovorax paradoxus S110] Length = 218 Score = 221 bits (562), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 108/191 (56%), Positives = 139/191 (72%) Query: 2 RLRILEAAKQEFAAHGLAGARVDRIAANAGANKRMLYYHVGNKEDLYLEVLEGAYEKIRA 61 +L IL +A+ EFA GLAGAR+D IA AG NKR++YY+ G+K+DL+L VLE Y IR Sbjct: 23 QLAILASARDEFAQRGLAGARMDSIAERAGLNKRLIYYYFGSKDDLFLAVLERTYADIRE 82 Query: 62 EERTLDLEHLDPPEAIGRLIDFTWNYFLRNPEFLALLNTENLAKAKHLKRSTKVKSMHSP 121 E+ L L+ +DP EAI +L+ FTW+Y+L +PEF+ LLN+ENL A HLKRS +++ M+SP Sbjct: 83 AEQRLHLDEIDPVEAIRQLVSFTWHYYLEHPEFITLLNSENLHCAAHLKRSERIQEMNSP 142 Query: 122 FVEMIRTVVTRGVESGDFRVAVDPVQLYISIAGLAFFYLSNSATLSVIFGRDLLKKDARD 181 V+++ TV+ RG FR VDPVQLYISIA L +FYLSN+ TLS IFGRDL A Sbjct: 143 LVQLLDTVLERGRRDKLFRAGVDPVQLYISIASLCYFYLSNNHTLSAIFGRDLRAPKAMA 202 Query: 182 ERLEHMTALVL 192 +RL HMT LVL Sbjct: 203 QRLSHMTDLVL 213 >ref|YP_995423.1| TetR family transcriptional regulator [Verminephrobacter eiseniae EF01-2] gb|ABM56405.1| transcriptional regulator, TetR family [Verminephrobacter eiseniae EF01-2] Length = 216 Score = 221 bits (562), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 104/189 (55%), Positives = 138/189 (73%) Query: 5 ILEAAKQEFAAHGLAGARVDRIAANAGANKRMLYYHVGNKEDLYLEVLEGAYEKIRAEER 64 I AA+ EFA HGL GAR++RIA AG NKR++YY+ +KE L+ VLE AY +IR +ER Sbjct: 23 IFSAARDEFAEHGLGGARMERIAERAGLNKRLIYYYFEDKERLFQAVLEQAYMQIREQER 82 Query: 65 TLDLEHLDPPEAIGRLIDFTWNYFLRNPEFLALLNTENLAKAKHLKRSTKVKSMHSPFVE 124 LDL L+P AI RL++FTW Y+L NP+FL LLN+ NL KA+HL +S + + ++SP + Sbjct: 83 QLDLLALEPATAIRRLVEFTWTYYLDNPQFLTLLNSANLHKARHLPQSQRARELNSPLIA 142 Query: 125 MIRTVVTRGVESGDFRVAVDPVQLYISIAGLAFFYLSNSATLSVIFGRDLLKKDARDERL 184 + V+ RG +G FR VDP+QLYISIAGLA+FYLSN+ TLS IFGRDL+ AR+ERL Sbjct: 143 TLGEVLERGRRAGSFRGGVDPLQLYISIAGLAYFYLSNNHTLSAIFGRDLMAPKARNERL 202 Query: 185 EHMTALVLA 193 HM +++ Sbjct: 203 SHMCDVIMG 211 >ref|YP_004156239.1| TetR family transcriptional regulator [Variovorax paradoxus EPS] gb|ADU38128.1| regulatory protein TetR [Variovorax paradoxus EPS] Length = 218 Score = 218 bits (556), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 106/191 (55%), Positives = 140/191 (73%) Query: 2 RLRILEAAKQEFAAHGLAGARVDRIAANAGANKRMLYYHVGNKEDLYLEVLEGAYEKIRA 61 +L IL AA++EF+ GLAGAR+D IA AG NKR++YY+ G+K+DL+L VLE Y IR Sbjct: 23 QLAILAAAREEFSQLGLAGARMDSIATRAGLNKRLIYYYFGSKDDLFLAVLERTYADIRE 82 Query: 62 EERTLDLEHLDPPEAIGRLIDFTWNYFLRNPEFLALLNTENLAKAKHLKRSTKVKSMHSP 121 E+ L L+ ++P EAI +L+ FTW+Y+L +PEF+ LLN+ENL +A HLKRS +++ M+SP Sbjct: 83 AEQRLHLDEIEPVEAIRQLVSFTWHYYLEHPEFITLLNSENLHRAAHLKRSERIQEMNSP 142 Query: 122 FVEMIRTVVTRGVESGDFRVAVDPVQLYISIAGLAFFYLSNSATLSVIFGRDLLKKDARD 181 V+++ TV+ RG F VDPVQLYISIA L +FYLSN+ TLS IFGRDL A Sbjct: 143 LVQLLDTVLERGRRENLFHAGVDPVQLYISIASLCYFYLSNNHTLSAIFGRDLRAPKAMA 202 Query: 182 ERLEHMTALVL 192 +RL HMT LVL Sbjct: 203 QRLSHMTDLVL 213