BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0003.p (311 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769479.1| hypothetical protein blr2839 [Bradyrhizobium ja... 426 e-117 ref|YP_001525265.1| hypothetical protein AZC_2349 [Azorhizobium ... 221 9e-56 ref|YP_002823998.1| hypothetical protein NGR_b17950 [Sinorhizobi... 182 5e-44 gb|AEG06123.1| Mandelate racemase/muconate lactonizing protein [... 182 7e-44 ref|NP_384227.1| hypothetical protein SMc04131 [Sinorhizobium me... 182 7e-44 >ref|NP_769479.1| hypothetical protein blr2839 [Bradyrhizobium japonicum USDA 110] dbj|BAC48104.1| blr2839 [Bradyrhizobium japonicum USDA 110] Length = 465 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 212/301 (70%), Positives = 245/301 (81%) Query: 1 MPLRLKVNDIAFFERPLVFARPFRFGAVTITASTQMFARVEIEVEGKGRATGAGAEMLAP 60 M RLK+ DI FFERP+ FARPFRFGA+TI A+TQ+F RVEIEVEG+G A GA AE+L P Sbjct: 1 MAPRLKLRDITFFERPVQFARPFRFGAITINATTQLFVRVEIEVEGRGSAVGASAELLVP 60 Query: 61 KWFDKRPHLTEAQSLDGLRRSLAVARELYLANRGFETAFGLHAERIGPQVAACAVEDIPP 120 KWFDKRP + AQ++DGLRRSL +AR LYLA GF TAF LHA IG Q+A CA ++IP Sbjct: 61 KWFDKRPEFSPAQTVDGLRRSLEIARGLYLARTGFLTAFDLHAACIGAQIATCAKKNIPA 120 Query: 121 LAAGFGPAEIDKAILDALLRAAGANFFDGMAGNIAGIDARLTPDVDDAAIARFLSTRKRL 180 LAA +G AEIDKAILDALLR FFDGMAGN+AGIDARL+PD+ DA IA FLS+RK L Sbjct: 121 LAAAYGLAEIDKAILDALLRGVETGFFDGMAGNVAGIDARLSPDLKDAEIAAFLSSRKPL 180 Query: 181 ERVAVRHTVGMDDKIEGEGGVADRNETAGARYFKLKLNGDPAHDAARLARIGSELAKLPY 240 RVA+RHTVG+DD +EG+GGVAD +E AGA YFKLKL+GDPA DAARLARIG EL L Sbjct: 181 PRVAIRHTVGLDDTVEGKGGVADAHENAGASYFKLKLSGDPAADAARLARIGKELDTLGR 240 Query: 241 ATRITLDANEQYADLAALSALVDRLDHDAALQPIRANLLYIEQPMPRDITRASPLGKLAX 300 + ++TLDANEQYADLAAL AL+DRLDHD+ L+PI + LLY+EQPMPRDITR SPLG LA Sbjct: 241 SYKVTLDANEQYADLAALQALMDRLDHDSDLRPIASRLLYVEQPMPRDITRQSPLGSLAA 300 Query: 301 R 301 R Sbjct: 301 R 301 >ref|YP_001525265.1| hypothetical protein AZC_2349 [Azorhizobium caulinodans ORS 571] dbj|BAF88347.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571] Length = 463 Score = 221 bits (564), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 133/292 (45%), Positives = 175/292 (59%), Gaps = 3/292 (1%) Query: 4 RLKVNDIAFFERPLVFARPFRFGAVTITASTQMFARVEIEVEGKGRATGAGAEMLAPKWF 63 RL++ + ER + F RPFRFG + A+ Q F R+E+EVEG GRA G AEM+ P+WF Sbjct: 5 RLRILSVEVRERMMPFVRPFRFGPSVVEAAPQAFVRIELEVEGAGRAVGQAAEMMMPRWF 64 Query: 64 DKRPHLTEAQSLDGLRRSLAVARELYLANRGFETAFGLHAERIGPQVAACAVEDIPPLAA 123 DK PH + Q++D LRR L A LY A+ + TA+GL A+ Q+ IP LAA Sbjct: 65 DKAPHKSPEQTVDDLRRVLLHAAALY-ADAPWSTAYGLSADAAAMQLGWAEGRGIPALAA 123 Query: 124 GFGPAEIDKAILDALLRAAGANFFDGMAGNIAGIDARLTPDVDDAAIARFLSTRKRLERV 183 FGPA +DKA++DALLRA F +G++ N+ G+DAR D+ I L++ + V Sbjct: 124 HFGPALLDKAVVDALLRALSLTFPEGLSRNVMGLDARNARDLSPEQIPALLASLTPVPAV 183 Query: 184 AVRHTVGMDDKIEGEGGVADRNETAGARYFKLKLNGDPAHDAARLARIGSELAKLPYATR 243 AVRHT+G+ D +EG G++ A R+FK+K+ GD A D RLA I + L L R Sbjct: 184 AVRHTIGLLDPLEGPHGLSAEIAAARLRFFKIKIGGDLAADLDRLAAITALLTHLAPDFR 243 Query: 244 ITLDANEQYADLAALSALVDRLDHDAALQPIRANLLYIEQPMPRDITRASPL 295 TLDANEQY D L L LD AL+P++A LLYIEQP R T PL Sbjct: 244 ATLDANEQY-DPERLCQLAAGLD-TPALRPLKARLLYIEQPFDRTETFTRPL 293 >ref|YP_002823998.1| hypothetical protein NGR_b17950 [Sinorhizobium fredii NGR234] gb|AAQ87075.1| Hypothetical protein RNGR00048 [Sinorhizobium fredii NGR234] gb|ACP23245.1| hypothetical protein NGR_b17950 [Sinorhizobium fredii NGR234] Length = 471 Score = 182 bits (462), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 114/312 (36%), Positives = 169/312 (54%), Gaps = 14/312 (4%) Query: 4 RLKVNDIAFFERPLVFARPFRFGAVTITASTQMFARVEIEVEGKGRATGAGAEMLAPKWF 63 R+++ + FFERP+ F PFRFGA + + Q F RV +E E A G AEM+ PKWF Sbjct: 6 RIRLLEADFFERPVDFRFPFRFGAARVERAPQAFVRVRVEDERGRSAVGWSAEMMMPKWF 65 Query: 64 DKRPHLTEAQSLDGLRRSLAVARELYLANRGFETAFGLHAERIGPQVAACAVEDIPPLAA 123 DK P L+ ++ LR SL +A E L + +T FGLHA A A +P L A Sbjct: 66 DKNPALSPEDNVGQLRTSLRLAIE-GLQSLKADTPFGLHAAAEANHHWAAARHGLPALVA 124 Query: 124 GFGPAEIDKAILDALLRAAGANFFDGMAGNIAGIDARLTPDVDDAAIARFLSTRKRLERV 183 +G A +D+AI+DAL R G + + + GN+ G+ PD+ + RFLS + Sbjct: 125 SYGLALVDRAIIDALCRMMGVSAVEAITGNLLGVTDTTAPDLAGFDLTRFLSRLAPEPNL 184 Query: 184 AVRHTVGMDDKIEG---------EGGVADRNETA----GARYFKLKLNGDPAHDAARLAR 230 AVRHT+G+ D + E G+ R + G R+FK+K++G PA D RL Sbjct: 185 AVRHTIGLADTLTASELDSAQRLEDGLPQRLDQVIAAYGHRFFKIKVSGRPAEDTERLVA 244 Query: 231 IGSELAKLPYATRITLDANEQYADLAALSALVDRLDHDAALQPIRANLLYIEQPMPRDIT 290 I + L +L R+TLD NEQ+ + L++R++ + LQ +RA++L+ EQP+ R Sbjct: 245 IAAVLDRLVEDYRVTLDGNEQFESGDGVGDLLERIEKEPRLQRLRASMLFFEQPIARAEA 304 Query: 291 RASPLGKLAXRL 302 + + +A RL Sbjct: 305 LSKSVAAIAERL 316 >gb|AEG06123.1| Mandelate racemase/muconate lactonizing protein [Sinorhizobium meliloti BL225C] Length = 471 Score = 182 bits (461), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 120/313 (38%), Positives = 178/313 (56%), Gaps = 16/313 (5%) Query: 4 RLKVNDIAFFERPLVFARPFRFGAVTITASTQMFARVEIEVEGKGR-ATGAGAEMLAPKW 62 R+++ + FERP+ F PFRFG+ + + Q F RV +E + +GR A G AEM+ PKW Sbjct: 6 RVRLAEAEVFERPVEFRFPFRFGSARVATAPQAFVRVRVE-DARGRSAIGWSAEMMMPKW 64 Query: 63 FDKRPHLTEAQSLDGLRRSLAVARELYLANRGFETAFGLHAERIGPQVAACAVEDIPPLA 122 FDK P L+ +++ LR SL +A E L + +T FGLHA G A A +P L Sbjct: 65 FDKNPGLSPEDNVEQLRASLRLAIE-GLTSLQAQTPFGLHAAAEGDHHRAAAGHGLPALV 123 Query: 123 AGFGPAEIDKAILDALLRAAGANFFDGMAGNIAGIDARLTPDVDDAAIARFLSTRKRLER 182 A +G A +D+AILDAL R GA+ + N+ GI PD++ +ARFLS + R Sbjct: 124 ASYGLALLDRAILDALCRMTGASAAGAVRANLPGITGATAPDLEGFDLARFLSRLEPGPR 183 Query: 183 VAVRHTVGMDDKIEG---------EGGVADRNETA----GARYFKLKLNGDPAHDAARLA 229 +AVRHT+G+ D + E G+ E G RYFK+K++G PA D RL Sbjct: 184 LAVRHTIGLADALTAADLAPGQRLEDGLPQTLEEVIAAYGHRYFKIKVSGRPAEDTRRLL 243 Query: 230 RIGSELAKLPYATRITLDANEQYADLAALSALVDRLDHDAALQPIRANLLYIEQPMPRDI 289 I + L + A R+TLD NEQ+ + A++ L+DR+ + L+ +RA+ L+ EQP+ R Sbjct: 244 AIAAVLDQRVDAYRVTLDGNEQFENADAVADLLDRIAEEPRLEKLRASALFFEQPIVRAE 303 Query: 290 TRASPLGKLAXRL 302 + P+ ++A R+ Sbjct: 304 ALSRPVTEVAGRM 316 >ref|NP_384227.1| hypothetical protein SMc04131 [Sinorhizobium meliloti 1021] ref|YP_004550771.1| Mandelate racemase/muconate lactonizing protein [Sinorhizobium meliloti AK83] emb|CAC41508.1| Hypothetical protein SMc04131 [Sinorhizobium meliloti 1021] gb|AEG55157.1| Mandelate racemase/muconate lactonizing protein [Sinorhizobium meliloti AK83] gb|AEH80821.1| hypothetical protein SM11_chr3592 [Sinorhizobium meliloti SM11] Length = 471 Score = 182 bits (461), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 120/313 (38%), Positives = 178/313 (56%), Gaps = 16/313 (5%) Query: 4 RLKVNDIAFFERPLVFARPFRFGAVTITASTQMFARVEIEVEGKGR-ATGAGAEMLAPKW 62 R+++ + FERP+ F PFRFG+ + + Q F RV +E + +GR A G AEM+ PKW Sbjct: 6 RVRLAEAEVFERPVEFRFPFRFGSARVATAPQAFVRVRVE-DARGRSAIGWSAEMMMPKW 64 Query: 63 FDKRPHLTEAQSLDGLRRSLAVARELYLANRGFETAFGLHAERIGPQVAACAVEDIPPLA 122 FDK P L+ +++ LR SL +A E L + +T FGLHA G A A +P L Sbjct: 65 FDKNPGLSPEDNVEQLRASLRLAIE-GLTSLQAQTPFGLHAAAEGDHHRAAAGHGLPALV 123 Query: 123 AGFGPAEIDKAILDALLRAAGANFFDGMAGNIAGIDARLTPDVDDAAIARFLSTRKRLER 182 A +G A +D+AILDAL R GA+ + N+ GI PD++ +ARFLS + R Sbjct: 124 ASYGLALLDRAILDALCRMTGASAAGAVRANLPGITGATAPDLEGFDLARFLSRLEPGPR 183 Query: 183 VAVRHTVGMDDKIEG---------EGGVADRNETA----GARYFKLKLNGDPAHDAARLA 229 +AVRHT+G+ D + E G+ E G RYFK+K++G PA D RL Sbjct: 184 LAVRHTIGLADALTAADLAPGQRLEDGLPQTLEEVIAAYGHRYFKIKVSGRPAEDTRRLL 243 Query: 230 RIGSELAKLPYATRITLDANEQYADLAALSALVDRLDHDAALQPIRANLLYIEQPMPRDI 289 I + L + A R+TLD NEQ+ + A++ L+DR+ + L+ +RA+ L+ EQP+ R Sbjct: 244 AIAAVLDQRVDAYRVTLDGNEQFENADAVADLLDRIAEEPRLEKLRASALFFEQPIVRAE 303 Query: 290 TRASPLGKLAXRL 302 + P+ ++A R+ Sbjct: 304 ALSRPVTEVAGRM 316