BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0002.p         (100 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_769479.1| hypothetical protein blr2839 [Bradyrhizobium ja...   129   2e-28
ref|YP_002546227.1| hypothetical protein Arad_4619 [Agrobacteriu...    97   7e-19
ref|YP_002823998.1| hypothetical protein NGR_b17950 [Sinorhizobi...    95   3e-18
ref|YP_001328989.1| hypothetical protein Smed_3333 [Sinorhizobiu...    91   4e-17
ref|YP_001525265.1| hypothetical protein AZC_2349 [Azorhizobium ...    84   8e-15

>ref|NP_769479.1| hypothetical protein blr2839 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC48104.1| blr2839 [Bradyrhizobium japonicum USDA 110]
          Length = 465

 Score =  129 bits (323), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 71/98 (72%), Positives = 79/98 (80%), Gaps = 3/98 (3%)

Query: 1   VQQDLALGALIGVIHAERNGHHYVDGFADTPADEADAFLTAHPDLYTRAGGKVRLAIHDG 60
           VQQDLALGA +GV HAERNGHHYVDGF DTPA EA AF  AHPDLY  AG  +RL+IHDG
Sbjct: 369 VQQDLALGAFLGVTHAERNGHHYVDGFGDTPAAEAAAFAAAHPDLYADAGQGIRLSIHDG 428

Query: 61  DLLTGSIAAAPGFASSVHPDWSTMQPLRRPTPRVSQEQ 98
           DLLTGS+ AA GFA+SVHPDWS ++PL +PT    QEQ
Sbjct: 429 DLLTGSLHAA-GFATSVHPDWSALRPLEQPTSL--QEQ 463


>ref|YP_002546227.1| hypothetical protein Arad_4619 [Agrobacterium radiobacter K84]
 gb|ACM28294.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
          Length = 471

 Score = 97.1 bits (240), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 47/85 (55%), Positives = 54/85 (63%)

Query: 1   VQQDLALGALIGVIHAERNGHHYVDGFADTPADEADAFLTAHPDLYTRAGGKVRLAIHDG 60
           VQQDLAL +LIG+ H ERNGHHYVDG A  P  E  AF  AH DLY    G+ RL I  G
Sbjct: 385 VQQDLALASLIGMTHIERNGHHYVDGMAGAPEAEQAAFARAHDDLYAVRDGRTRLRIEGG 444

Query: 61  DLLTGSIAAAPGFASSVHPDWSTMQ 85
            +  GS+  A G  SS+ PDWS M+
Sbjct: 445 RIAIGSVIGAIGLGSSIAPDWSAME 469


>ref|YP_002823998.1| hypothetical protein NGR_b17950 [Sinorhizobium fredii NGR234]
 gb|AAQ87075.1| Hypothetical protein RNGR00048 [Sinorhizobium fredii NGR234]
 gb|ACP23245.1| hypothetical protein NGR_b17950 [Sinorhizobium fredii NGR234]
          Length = 471

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 45/84 (53%), Positives = 54/84 (64%)

Query: 1   VQQDLALGALIGVIHAERNGHHYVDGFADTPADEADAFLTAHPDLYTRAGGKVRLAIHDG 60
           +QQDL L A IG  H ERNGHHYVDG    P  E  A+L AH DLY  A G+ RLAI +G
Sbjct: 386 LQQDLVLAAFIGAGHIERNGHHYVDGMGRAPMAEQAAYLAAHGDLYEDAAGRARLAICNG 445

Query: 61  DLLTGSIAAAPGFASSVHPDWSTM 84
           D+   S+  A G  SSV PDW+++
Sbjct: 446 DITFASVLRATGLGSSVEPDWASL 469


>ref|YP_001328989.1| hypothetical protein Smed_3333 [Sinorhizobium medicae WSM419]
 gb|ABR62154.1| conserved hypothetical protein [Sinorhizobium medicae WSM419]
          Length = 473

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 43/87 (49%), Positives = 56/87 (64%)

Query: 1   VQQDLALGALIGVIHAERNGHHYVDGFADTPADEADAFLTAHPDLYTRAGGKVRLAIHDG 60
           +QQDL L +L+G  H ERNGHHYVDG A  P  E  A+L+ H DLY  A G+ RLAI  G
Sbjct: 386 LQQDLVLASLVGAGHVERNGHHYVDGMAGAPEGEQLAYLSHHGDLYEGAAGQTRLAIQAG 445

Query: 61  DLLTGSIAAAPGFASSVHPDWSTMQPL 87
           ++   +   + G  SSV PDW+ M+P+
Sbjct: 446 EITFATALRSVGLGSSVDPDWAAMRPV 472


>ref|YP_001525265.1| hypothetical protein AZC_2349 [Azorhizobium caulinodans ORS 571]
 dbj|BAF88347.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571]
          Length = 463

 Score = 84.0 bits (206), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 48/97 (49%), Positives = 60/97 (61%)

Query: 1   VQQDLALGALIGVIHAERNGHHYVDGFADTPADEADAFLTAHPDLYTRAGGKVRLAIHDG 60
           +QQDLAL A +G+ H ERNGHHYV GF   P +EA AF  AHPDLY        L +  G
Sbjct: 364 LQQDLALVATLGLTHGERNGHHYVAGFGPAPEEEAGAFAAAHPDLYRLTDAGAALDVSRG 423

Query: 61  DLLTGSIAAAPGFASSVHPDWSTMQPLRRPTPRVSQE 97
            L T S+ +APGFA    PDW+++ P+  P  R+ QE
Sbjct: 424 VLATASLLSAPGFAGRAEPDWASLAPVTLPETRLHQE 460