BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0008.0013.p (399 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773444.1| substrate-binding protein [Bradyrhizobium japon... 761 0.0 ref|YP_001240604.1| putative ABC transporter substrate-binding p... 747 0.0 ref|NP_768902.1| branched chain amino acid transport system subs... 501 e-139 ref|NP_773288.1| ABC transporter substrate-binding protein [Brad... 461 e-127 ref|YP_004681127.1| ABC transporter permease [Cupriavidus necato... 451 e-124 >ref|NP_773444.1| substrate-binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC52069.1| blr6804 [Bradyrhizobium japonicum USDA 110] Length = 404 Score = 761 bits (1965), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/404 (90%), Positives = 379/404 (93%), Gaps = 5/404 (1%) Query: 1 MRQFLAAALVAAMTTAAH-----AQVSDDVVRIGVLTDLSSWGRDNSGPGSVEAAKMAVE 55 MR FLA A++AAMT+AA AQVSDD VRIGVLTDLSSWGRDNSGPGSVEAAKMAVE Sbjct: 1 MRGFLACAMLAAMTSAAMTSTATAQVSDDAVRIGVLTDLSSWGRDNSGPGSVEAAKMAVE 60 Query: 56 EFGPTVLGKPIEIISADHQMKTDVGVQVVRGWFDNGKVDAVVDIPNSGIAIAVHNMVRER 115 EFGPTVLGKPIEIISADHQMKTDVGVQ+VRGWFDNGKVDAVVDIPNSGIAIAVHNMVRER Sbjct: 61 EFGPTVLGKPIEIISADHQMKTDVGVQIVRGWFDNGKVDAVVDIPNSGIAIAVHNMVRER 120 Query: 116 NKIALLSGPGASSLTDELCSPNTVHFAYDTYALSKVTASAVIKEGGKSWFFVTADYAFGQ 175 NKIALLSGPGASSLTDELCSPNTVHF YDTYALSKVTASAVIKEGGKSW+F+TADYAFGQ Sbjct: 121 NKIALLSGPGASSLTDELCSPNTVHFTYDTYALSKVTASAVIKEGGKSWYFITADYAFGQ 180 Query: 176 QLEKDATRFINEMGGKVLGSVKHPLNNADFSSFALQAQSSKADVVAFANAGQDTDNSIKQ 235 QLEKDATRFINEMGGKVLG VKHP N ADFSSFALQAQSSK+DVVAFANAGQDTDN+IKQ Sbjct: 181 QLEKDATRFINEMGGKVLGGVKHPTNTADFSSFALQAQSSKSDVVAFANAGQDTDNAIKQ 240 Query: 236 SGEFGLVQGGQKLVGLLMFDTDVHAIGLNAAQGTYMTTASYWNMDEKTRAWSKKFYARAN 295 SGEFGLVQGGQKLVGLLMFDTDVHAIGL AAQGTYMTTA+YWNMDE TRAWSKKFY R Sbjct: 241 SGEFGLVQGGQKLVGLLMFDTDVHAIGLKAAQGTYMTTAAYWNMDEATRAWSKKFYERTK 300 Query: 296 VMPTMIQTGVYGSVLHYLKAIQAAGTDDPKAVMAKMRELPIEDTFVHGGKLREDGRVIRD 355 VMPTMI TGVYGSVLHYLK I+AAGTDDP VMAKMRELPIED FVHGGKLREDGRVIRD Sbjct: 301 VMPTMIHTGVYGSVLHYLKGIKAAGTDDPAKVMAKMRELPIEDIFVHGGKLREDGRVIRD 360 Query: 356 MYLAKVKKPSESKEPWDYLDIVKTVKGEDAYRPVSESKCPLLKK 399 MYLAKVK P +SKEPWDYL+I+KTVKGEDA+RPVSESKCPLLKK Sbjct: 361 MYLAKVKSPEQSKEPWDYLEIIKTVKGEDAFRPVSESKCPLLKK 404 >ref|YP_001240604.1| putative ABC transporter substrate-binding protein [Bradyrhizobium sp. BTAi1] gb|ABQ36698.1| amino acid/amide ABC transporter substrate-binding protein, HAAT family [Bradyrhizobium sp. BTAi1] Length = 403 Score = 747 bits (1928), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/401 (88%), Positives = 374/401 (93%), Gaps = 3/401 (0%) Query: 2 RQFLAAALVAA---MTTAAHAQVSDDVVRIGVLTDLSSWGRDNSGPGSVEAAKMAVEEFG 58 RQ LA A +A + T A AQVSDDVVRIGVLTDLSSWGRDNSGPGSVEAAKMAVEEFG Sbjct: 3 RQLLACAFLATTSFLATNASAQVSDDVVRIGVLTDLSSWGRDNSGPGSVEAAKMAVEEFG 62 Query: 59 PTVLGKPIEIISADHQMKTDVGVQVVRGWFDNGKVDAVVDIPNSGIAIAVHNMVRERNKI 118 PTVLGKPIEIISADHQMKTDVG +VR WFDNGKVDAVVDIPNSGIAIAVHNMVRERNKI Sbjct: 63 PTVLGKPIEIISADHQMKTDVGTTIVRDWFDNGKVDAVVDIPNSGIAIAVHNMVRERNKI 122 Query: 119 ALLSGPGASSLTDELCSPNTVHFAYDTYALSKVTASAVIKEGGKSWFFVTADYAFGQQLE 178 ALLSGPGASSLTDELCSPNTVHF YDTYALSKVT SAVI +GGKSW+F+TADYAFGQQLE Sbjct: 123 ALLSGPGASSLTDELCSPNTVHFTYDTYALSKVTTSAVISQGGKSWYFITADYAFGQQLE 182 Query: 179 KDATRFINEMGGKVLGSVKHPLNNADFSSFALQAQSSKADVVAFANAGQDTDNSIKQSGE 238 KDATRFI E+GG +LG VKHP N ADFSSFALQAQSSKADVVAFANAGQDTDN+IKQSGE Sbjct: 183 KDATRFIKELGGTILGGVKHPTNTADFSSFALQAQSSKADVVAFANAGQDTDNAIKQSGE 242 Query: 239 FGLVQGGQKLVGLLMFDTDVHAIGLNAAQGTYMTTASYWNMDEKTRAWSKKFYARANVMP 298 FGLV+GGQKLVGLLMFDTDVHAIGL AAQGTYMTTASYWNMD+ TRAWSK+F+ R VMP Sbjct: 243 FGLVKGGQKLVGLLMFDTDVHAIGLEAAQGTYMTTASYWNMDDNTRAWSKRFFVRTKVMP 302 Query: 299 TMIQTGVYGSVLHYLKAIQAAGTDDPKAVMAKMRELPIEDTFVHGGKLREDGRVIRDMYL 358 TMIQTGVYGSVLHYLKAI+AAGTDDPKAVMAKMRELPIED FVHGGKLREDGRV+RDMYL Sbjct: 303 TMIQTGVYGSVLHYLKAIKAAGTDDPKAVMAKMRELPIEDVFVHGGKLREDGRVVRDMYL 362 Query: 359 AKVKKPSESKEPWDYLDIVKTVKGEDAYRPVSESKCPLLKK 399 A+VKKPSESKEPWDYL+IVKTVKGEDA+RPVSESKCPLLKK Sbjct: 363 ARVKKPSESKEPWDYLEIVKTVKGEDAFRPVSESKCPLLKK 403 >ref|NP_768902.1| branched chain amino acid transport system substrate-binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC47527.1| branched chain amino acid transport system substrate-binding protein [Bradyrhizobium japonicum USDA 110] Length = 417 Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust. Identities = 234/398 (58%), Positives = 295/398 (74%) Query: 1 MRQFLAAALVAAMTTAAHAQVSDDVVRIGVLTDLSSWGRDNSGPGSVEAAKMAVEEFGPT 60 MR+ L+ A AA AQVS DVV+IGVLTD++ D +G GSV AA+MAV E G Sbjct: 16 MRRIACVLLLLAQPVAARAQVSGDVVKIGVLTDMAGVTADITGKGSVVAAEMAVTEIGGA 75 Query: 61 VLGKPIEIISADHQMKTDVGVQVVRGWFDNGKVDAVVDIPNSGIAIAVHNMVRERNKIAL 120 VLGKPI+I+SADHQ K DVG + R WFD VDA+VD+PNSG+A+AV ++ RE+ +I L Sbjct: 76 VLGKPIQIVSADHQHKADVGTAIARRWFDVEDVDAIVDVPNSGVALAVQSLAREKKRIVL 135 Query: 121 LSGPGASSLTDELCSPNTVHFAYDTYALSKVTASAVIKEGGKSWFFVTADYAFGQQLEKD 180 SGPG ++LT+E CSP H+ YDTYA+S TASAV+K GG +WF + +DYAFG QL++D Sbjct: 136 YSGPGTTALTNEQCSPYGFHWTYDTYAVSHGTASAVVKAGGGTWFILASDYAFGHQLQQD 195 Query: 181 ATRFINEMGGKVLGSVKHPLNNADFSSFALQAQSSKADVVAFANAGQDTDNSIKQSGEFG 240 AT I +GGKVLGS +HPLN +DFSSF L AQSS A V+ ANAG DT N+++Q+GEFG Sbjct: 196 ATSVIAALGGKVLGSARHPLNTSDFSSFLLSAQSSGAKVIGLANAGNDTVNAMRQAGEFG 255 Query: 241 LVQGGQKLVGLLMFDTDVHAIGLNAAQGTYMTTASYWNMDEKTRAWSKKFYARANVMPTM 300 LVQGGQ L L++F DVHA+GL AQGTY+TTASYW+M+E TRAWSK F+A+ +MP+M Sbjct: 256 LVQGGQSLAALILFLQDVHALGLRDAQGTYLTTASYWDMNEATRAWSKAFFAKTGMMPSM 315 Query: 301 IQTGVYGSVLHYLKAIQAAGTDDPKAVMAKMRELPIEDTFVHGGKLREDGRVIRDMYLAK 360 + GVYG+V HYLKA+ +AGTDD V MR +P+ED F +REDGRV R MYL + Sbjct: 316 LHAGVYGAVRHYLKAVASAGTDDAGRVATTMRTIPVEDVFSEDASIREDGRVTRTMYLVR 375 Query: 361 VKKPSESKEPWDYLDIVKTVKGEDAYRPVSESKCPLLK 398 VKKPS+SK PWDY DIV+ + E P++ESKCPL+K Sbjct: 376 VKKPSDSKYPWDYFDIVRKIPPEKTVWPLAESKCPLVK 413 >ref|NP_773288.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC51913.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum USDA 110] Length = 403 Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust. Identities = 215/401 (53%), Positives = 289/401 (72%), Gaps = 4/401 (0%) Query: 1 MRQFLAAALV----AAMTTAAHAQVSDDVVRIGVLTDLSSWGRDNSGPGSVEAAKMAVEE 56 M++ +AA V AA A AQ+SDDVV+IGVLTD+SS D +G GS+ A +MAV + Sbjct: 1 MQKLIAATAVGLALAATCGTAQAQISDDVVKIGVLTDMSSLYADATGKGSLAAVEMAVAD 60 Query: 57 FGPTVLGKPIEIISADHQMKTDVGVQVVRGWFDNGKVDAVVDIPNSGIAIAVHNMVRERN 116 +G V GKP+++++ADHQ K DVGV + R W+DN KVDA+ D+P S +A+ + + RE+N Sbjct: 61 YGAKVAGKPVQVVAADHQNKPDVGVNIARNWYDNDKVDAIFDVPTSSVALPISALTREKN 120 Query: 117 KIALLSGPGASSLTDELCSPNTVHFAYDTYALSKVTASAVIKEGGKSWFFVTADYAFGQQ 176 KI + SG G+S +T CSPNTVH+ YDTYALS V A++K G +W+FVTADYAFG Sbjct: 121 KININSGGGSSDITGVACSPNTVHWTYDTYALSNVAGKAMVKRGEDTWYFVTADYAFGMA 180 Query: 177 LEKDATRFINEMGGKVLGSVKHPLNNADFSSFALQAQSSKADVVAFANAGQDTDNSIKQS 236 L++DA + E GGKVLG V+HPLN++DFSSF LQAQ+SKA VVA ANAG DT N++KQ+ Sbjct: 181 LQRDAANVVKESGGKVLGEVRHPLNSSDFSSFLLQAQASKAKVVALANAGGDTTNALKQA 240 Query: 237 GEFGLVQGGQKLVGLLMFDTDVHAIGLNAAQGTYMTTASYWNMDEKTRAWSKKFYARANV 296 EFGL QGGQK++ LL TD H++G+ A QG +T A YW+M+E+TRA+SK+F + Sbjct: 241 AEFGLTQGGQKMIALLQEITDTHSLGIKATQGLIVTDAFYWDMNEETRAFSKRFNEKVGH 300 Query: 297 MPTMIQTGVYGSVLHYLKAIQAAGTDDPKAVMAKMRELPIEDTFVHGGKLREDGRVIRDM 356 MPTMIQ G+Y + +HYLKAI+A TD+ VM +MR P+ D F GK+R DGR++ DM Sbjct: 301 MPTMIQAGLYSATMHYLKAIEAIKTDEAPKVMEQMRSTPVNDFFAKNGKIRIDGRMVHDM 360 Query: 357 YLAKVKKPSESKEPWDYLDIVKTVKGEDAYRPVSESKCPLL 397 YL +VKKP ESK WD ++ TV G++A+RP+ + CPL+ Sbjct: 361 YLFEVKKPEESKGEWDLYKLIATVPGDEAFRPLDKGGCPLV 401 >ref|YP_004681127.1| ABC transporter permease [Cupriavidus necator N-1] gb|AEI79895.1| ABC transport system permease protein [Cupriavidus necator N-1] Length = 413 Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust. Identities = 205/382 (53%), Positives = 277/382 (72%), Gaps = 1/382 (0%) Query: 19 AQVSDDVVRIGVLTDLSSWGRDNSGPGSVEAAKMAVEEFGPTVLGKPIEIISADHQMKTD 78 A VSDDVV+IG+L D+S D +G GS AA+MA+++FG VLGK IE++ DHQ K D Sbjct: 32 AAVSDDVVKIGMLLDMSGLYADVTGRGSATAAQMAIDDFGGKVLGKKIELVVVDHQNKAD 91 Query: 79 VGVQVVRGWFDNGKVDAVVDIPNSGIAIAVHNMVRERNKIALLSGPGASSLTDELCSPNT 138 + R WFD VDA++D+ S A+AV + R++N+I + SGPG +T++LC+P + Sbjct: 92 IAANKAREWFDTANVDAILDVAASAPALAVLEVARQKNRIVVFSGPGTERITNDLCTPVS 151 Query: 139 VHFAYDTYALSKVTASAVIKEGGKSWFFVTADYAFGQQLEKDATRFINEMGGKVLGSVKH 198 VH+AYDTYAL+ TA A+++ GGKSWFF+TADYAFG L+ AT INE GGKVLG+ +H Sbjct: 152 VHYAYDTYALANTTARAMVERGGKSWFFLTADYAFGHTLQDSATAVINETGGKVLGAARH 211 Query: 199 PLNNADFSSFALQAQSSKADVVAFANAGQDTDNSIKQSGEFGLVQGG-QKLVGLLMFDTD 257 PL +DF+S+ LQAQ+SKA VV ANAG DT N+IK + EFGL + Q++ GLL++ D Sbjct: 212 PLATSDFASYLLQAQASKAQVVGLANAGGDTVNAIKAASEFGLTRNNTQRMAGLLLYIND 271 Query: 258 VHAIGLNAAQGTYMTTASYWNMDEKTRAWSKKFYARANVMPTMIQTGVYGSVLHYLKAIQ 317 +HAIGL A G +T A YW+M+E TRAWS++++ + MP M Q G Y SV HYLKA+Q Sbjct: 272 IHAIGLKTASGLVLTEAFYWDMNEATRAWSRRYFDKLRKMPNMSQAGAYSSVTHYLKAVQ 331 Query: 318 AAGTDDPKAVMAKMRELPIEDTFVHGGKLREDGRVIRDMYLAKVKKPSESKEPWDYLDIV 377 AAGTD+ AVM KM+ +PI D F G++REDGR++ DMYL +VK P+ESK PWDY ++ Sbjct: 332 AAGTDETAAVMKKMKSMPINDFFAKNGRIREDGRMVHDMYLFEVKTPAESKYPWDYYKVL 391 Query: 378 KTVKGEDAYRPVSESKCPLLKK 399 TV GE A+ P+S+S+CPLL++ Sbjct: 392 ATVPGEQAFMPMSKSQCPLLRR 413