BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0008.0009.p (228 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001240608.1| putative transcriptional regulator [Bradyrhi... 356 2e-96 ref|NP_773446.1| transcriptional regulator [Bradyrhizobium japon... 354 6e-96 ref|YP_158881.1| transcriptional regulatory protein [Aromatoleum... 232 3e-59 ref|YP_004418794.1| putative transcriptional regulator [Pusillim... 227 1e-57 ref|YP_935185.1| IclR family transcriptional regulator [Azoarcus... 220 2e-55 >ref|YP_001240608.1| putative transcriptional regulator [Bradyrhizobium sp. BTAi1] gb|ABQ36702.1| putative transcriptional regulatory protein [Bradyrhizobium sp. BTAi1] Length = 263 Score = 356 bits (913), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 174/223 (78%), Positives = 195/223 (87%) Query: 1 MPPAKAHPYLVSFSRIGLIEQDETTGRYEIGALALELGLISLRRQSAVRIATPRIAALAD 60 +PPAKAHPYLVSFSRIGLIEQD TTGRYEIG LALELGLISLRR SAVRIATP+IAALA Sbjct: 39 LPPAKAHPYLVSFSRIGLIEQDATTGRYEIGPLALELGLISLRRLSAVRIATPKIAALAG 98 Query: 61 SINHAVSLSVWGTHGATVVRLEEPSHPVHIAMRVGSVVALLETATGRAFAAFMPPNAIRT 120 +I+HAVSL+VWGT+G TVVRLEEPSH VHI MRVGS++ALLETATGRAFAAF+PP ++ Sbjct: 99 AIDHAVSLAVWGTNGPTVVRLEEPSHAVHIVMRVGSIMALLETATGRAFAAFLPPKTVKA 158 Query: 121 ALESGLDRLGVGYNPKRPPADAKTAEILAEVRSRRLARAIGDPLPGVNAFAAPVFDHAGH 180 AL++GLD LGVGYNPKR P K E+LAEVR++ LARA+GDPLPGVNAFAAPVFDHAGH Sbjct: 159 ALDAGLDHLGVGYNPKRAPKSPKVTEMLAEVRAQGLARAVGDPLPGVNAFAAPVFDHAGH 218 Query: 181 VALVITAMGPEGTFDASWDSAIAAALRDCAGEISRQLGHGTAR 223 +ALVITAMGP GTFDA W S +A LR CA EIS+QLGHG + Sbjct: 219 IALVITAMGPAGTFDAGWQSPLANRLRACAAEISKQLGHGIVQ 261 >ref|NP_773446.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC52071.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 264 Score = 354 bits (908), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 178/226 (78%), Positives = 190/226 (84%) Query: 1 MPPAKAHPYLVSFSRIGLIEQDETTGRYEIGALALELGLISLRRQSAVRIATPRIAALAD 60 M PAKAHPYL SFSRIGLIEQDETTGRYEIGALALELGLISLRR S VRIA P+IAALA Sbjct: 39 MTPAKAHPYLASFSRIGLIEQDETTGRYEIGALALELGLISLRRLSGVRIAGPKIAALAS 98 Query: 61 SINHAVSLSVWGTHGATVVRLEEPSHPVHIAMRVGSVVALLETATGRAFAAFMPPNAIRT 120 I HAVSL+VWGTHG TVV+LEEP PVHI MR GSV+ALLETATGRAFAAF+P + Sbjct: 99 QIGHAVSLAVWGTHGPTVVQLEEPGQPVHIVMRAGSVMALLETATGRAFAAFLPEKTVNA 158 Query: 121 ALESGLDRLGVGYNPKRPPADAKTAEILAEVRSRRLARAIGDPLPGVNAFAAPVFDHAGH 180 ALESGLDR GVGYNPKR AK A++L EVR LARA+GDPLPGVNAF+APVFDHAGH Sbjct: 159 ALESGLDRHGVGYNPKRAVKGAKVADMLTEVRKHGLARALGDPLPGVNAFSAPVFDHAGH 218 Query: 181 VALVITAMGPEGTFDASWDSAIAAALRDCAGEISRQLGHGTARATE 226 VALVITAMGPEGTFDA WDS IA ALRDCAG IS++LGHG A E Sbjct: 219 VALVITAMGPEGTFDARWDSPIAHALRDCAGGISKRLGHGMTVAAE 264 >ref|YP_158881.1| transcriptional regulatory protein [Aromatoleum aromaticum EbN1] emb|CAI07980.1| Transcriptional regulatory protein [Aromatoleum aromaticum EbN1] Length = 276 Score = 232 bits (592), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 115/218 (52%), Positives = 147/218 (67%) Query: 1 MPPAKAHPYLVSFSRIGLIEQDETTGRYEIGALALELGLISLRRQSAVRIATPRIAALAD 60 MPPAKAHPYLVSF ++GLIEQD TGRY +G +L+LGL +L + +R+ATP A L+D Sbjct: 55 MPPAKAHPYLVSFGKLGLIEQDPLTGRYGLGTFSLQLGLSALHGLNPLRVATPEAAKLSD 114 Query: 61 SINHAVSLSVWGTHGATVVRLEEPSHPVHIAMRVGSVVALLETATGRAFAAFMPPNAIRT 120 I V+++VWG GATVV +EE S VH+ MRVG+V+ L+ +ATGR FAAF+P T Sbjct: 115 EIGQNVAIAVWGNQGATVVSIEECSRQVHVNMRVGTVMNLVTSATGRVFAAFLPARLTET 174 Query: 121 ALESGLDRLGVGYNPKRPPADAKTAEILAEVRSRRLARAIGDPLPGVNAFAAPVFDHAGH 180 + L L +P + ++ L E+R +RLARA+G P+PG+NAF APVFDH GH Sbjct: 175 LIAEELAHLACAADPSLRLSRSQFDNELEEIRRQRLARAVGQPIPGINAFCAPVFDHNGH 234 Query: 181 VALVITAMGPEGTFDASWDSAIAAALRDCAGEISRQLG 218 VAL ITAMG FDA W S +A LR CA IS +LG Sbjct: 235 VALTITAMGAADNFDADWSSPLAEKLRSCAESISGRLG 272 >ref|YP_004418794.1| putative transcriptional regulator [Pusillimonas sp. T7-7] gb|AEC22170.1| putative transcriptional regulator [Pusillimonas sp. T7-7] Length = 275 Score = 227 bits (578), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 111/221 (50%), Positives = 156/221 (70%), Gaps = 3/221 (1%) Query: 1 MPPAKAHPYLVSFSRIGLIEQDETTGRYEIGALALELGLISLRRQSAVRIATPRIAALAD 60 M AKAHPYLVSF R+GL++QD TTGRYE+G AL++GL+SL+R VR+A P + LA Sbjct: 48 MTSAKAHPYLVSFIRVGLVQQDSTTGRYELGPFALQMGLVSLQRLDPVRVALPHLNQLAG 107 Query: 61 SINHAVSLSVWGTHGATVVRLEEPSHPVHIAMRVGSVVALLETATGRAFAAFMPPNAIRT 120 I H ++L+V G+HG T++ + + S+PVH+ MR G+V+++L TATGR F A++PP + Sbjct: 108 QIGHTLALAVLGSHGPTMIHISQASYPVHVNMRNGTVMSMLHTATGRVFVAWLPPKVAQH 167 Query: 121 ALESGLDRLGV--GYNPKRPPADAKTAEILAEVRSRRLARAIGDPLPGVNAFAAPVFDHA 178 +E LD V P +P A +++ EVR LA A+G+PLPG++A + PVFDH+ Sbjct: 168 YMERELDDQAVVTSATPLQPSPQA-LQKMVDEVRQAGLATALGNPLPGIDALSVPVFDHS 226 Query: 179 GHVALVITAMGPEGTFDASWDSAIAAALRDCAGEISRQLGH 219 G++AL +T++GP FDAS D AIA AL++CA ISRQLGH Sbjct: 227 GNIALALTSLGPSTLFDASPDGAIAHALKECATAISRQLGH 267 >ref|YP_935185.1| IclR family transcriptional regulator [Azoarcus sp. BH72] emb|CAL96299.1| putative transcriptional regulator iclR-family [Azoarcus sp. BH72] Length = 274 Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 109/219 (49%), Positives = 148/219 (67%), Gaps = 1/219 (0%) Query: 1 MPPAKAHPYLVSFSRIGLIEQDETTGRYEIGALALELGLISLRRQSAVRIATPRIAALAD 60 MPPAKAHPYLVSF ++GLIEQD TGRY +G +L++GL +L ++ AT I+ LAD Sbjct: 50 MPPAKAHPYLVSFGKLGLIEQDPLTGRYGLGPFSLQMGLTALHALDPLKAATAEISRLAD 109 Query: 61 SINHAVSLSVWGTHGATVVRLEEPSHPVHIAMRVGSVVA-LLETATGRAFAAFMPPNAIR 119 I V+++VWG HG T+VR+EE S P+H+ MR G+V+ LL +ATGR FAA +P R Sbjct: 110 EIQLNVAIAVWGNHGPTIVRIEESSKPIHVNMRPGTVMTPLLLSATGRVFAALLPARVTR 169 Query: 120 TALESGLDRLGVGYNPKRPPADAKTAEILAEVRSRRLARAIGDPLPGVNAFAAPVFDHAG 179 +E L P + E+LAEVR +ARA+G+P+PG+NAF+APVFDH+G Sbjct: 170 PLVEKELATFASAPQPALRLSQRHVDEVLAEVREHGMARALGNPIPGINAFSAPVFDHSG 229 Query: 180 HVALVITAMGPEGTFDASWDSAIAAALRDCAGEISRQLG 218 ++AL ITAMGP G+FD W+ A ++ CA +IS +LG Sbjct: 230 NLALAITAMGPAGSFDPDWEGPTARRVKACAEQISSRLG 268