BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0008.0005.p (451 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_533999.1| hypothetical protein RPC_4155 [Rhodopseudomonas... 815 0.0 ref|YP_485208.1| hypothetical protein RPB_1587 [Rhodopseudomonas... 803 0.0 ref|YP_568733.1| hypothetical protein RPD_1595 [Rhodopseudomonas... 802 0.0 ref|NP_772586.1| hypothetical protein bll5946 [Bradyrhizobium ja... 800 0.0 ref|YP_001993516.1| hypothetical protein Rpal_4547 [Rhodopseudom... 791 0.0 >ref|YP_533999.1| hypothetical protein RPC_4155 [Rhodopseudomonas palustris BisB18] gb|ABD89680.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18] Length = 451 Score = 815 bits (2106), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/451 (86%), Positives = 424/451 (94%) Query: 1 MKNDEILSQITDFCRRSDMAETTFGRRAVNDGKLVYRLREGKRITIDTLDRINAFIATST 60 MKND++L +I+DFCRR MAETTFGRRAVNDGKLV+RLREGKRITIDTLDRI AFIA T Sbjct: 1 MKNDQLLGEISDFCRRVGMAETTFGRRAVNDGKLVHRLREGKRITIDTLDRIRAFIAVGT 60 Query: 61 PGGVAPPRGLVVPPEKRDPRGNFRFFENRQRYLLFVHTCSEKRVIADRVALELAAIHPRP 120 GGV PPRGLVVPPE+RDP+GNFRFFENRQ+YLLFVHTCSEKRVIA+RVALEL +IHPRP Sbjct: 61 EGGVPPPRGLVVPPERRDPQGNFRFFENRQKYLLFVHTCSEKRVIAERVALELGSIHPRP 120 Query: 121 PALRVFDAGMGDGTVLARVLRAMHGRFPHMPFYVAGKELSLEDVRLTLDKVPDRLFEHPA 180 PA+RVFDAG+GDGTVLARVLR MHGRFPHMPFY+AGKELSLEDVRLTLDKVPDRLFEHPA Sbjct: 121 PAIRVFDAGVGDGTVLARVLRTMHGRFPHMPFYIAGKELSLEDVRLTLDKVPDRLFEHPA 180 Query: 181 SVFVFTNMYYAEAPWLTPKNSAAAASMIWHEVALRGASSGEFEAQIAELGPFLEQNWRAN 240 +VFV TNMYYAEAPWLTP + AAA MIWHEV LRG+SSGEFE QIAELGPFLE+NWRA+ Sbjct: 181 TVFVLTNMYYAEAPWLTPASPTAAAGMIWHEVVLRGSSSGEFETQIAELGPFLEENWRAS 240 Query: 241 LSPGNAMPIYERPVALVLYRDDHRFLLDSIIPRAGRTEANFDLVIASQPYRAKSSVNFRA 300 +S + MPIYERPVA+V+YR+DHRFLLDS+IPRAGR+EANFDLVIASQPYRAKSSVNFRA Sbjct: 241 ISARSGMPIYERPVAIVIYREDHRFLLDSMIPRAGRSEANFDLVIASQPYRAKSSVNFRA 300 Query: 301 KRIIAPLARALRGGGRLIGIHSHGGDPGLEMIQAVWPGENPFAVSRHEILRAVKYELGSA 360 KRIIAPLARALR GGRLIGIHSHG DPGL++++AVWPGENPFAVSRHE+LRAVKYELGSA Sbjct: 301 KRIIAPLARALRPGGRLIGIHSHGQDPGLDIVRAVWPGENPFAVSRHELLRAVKYELGSA 360 Query: 361 GRELNFNAYADNRSIFRYDMEALPNEVTGSIGTSTAFAAWNAAVYVAQIEDERLTETTEN 420 GR+LNFNAYAD+RSIFRYDMEALPNEVTGSIGTSTAFAAWNAAVYVAQIED+RLTE T+ Sbjct: 361 GRDLNFNAYADSRSIFRYDMEALPNEVTGSIGTSTAFAAWNAAVYVAQIEDDRLTEMTDG 420 Query: 421 GRALEATREVLRKHNGLWFYDESYVISRRRD 451 G L ATREVLRKH+GLWFYDESYVISRRRD Sbjct: 421 GHYLNATREVLRKHSGLWFYDESYVISRRRD 451 >ref|YP_485208.1| hypothetical protein RPB_1587 [Rhodopseudomonas palustris HaA2] gb|ABD06297.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2] Length = 450 Score = 803 bits (2075), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/451 (84%), Positives = 419/451 (92%), Gaps = 1/451 (0%) Query: 1 MKNDEILSQITDFCRRSDMAETTFGRRAVNDGKLVYRLREGKRITIDTLDRINAFIATST 60 MKND +L +I+D+CR++ MAETTFGRRAVNDGKLV RLREGKRIT+DTL+RI AF+A Sbjct: 1 MKNDPLLGRISDYCRQAGMAETTFGRRAVNDGKLVQRLREGKRITVDTLERIEAFVAAGL 60 Query: 61 PGGVAPPRGLVVPPEKRDPRGNFRFFENRQRYLLFVHTCSEKRVIADRVALELAAIHPRP 120 G PPRGLVVPPE+RDPR NFRFFENRQ+YLLFVHTCSEKRV+ADRVALEL +IHPRP Sbjct: 61 -GTAPPPRGLVVPPERRDPRSNFRFFENRQKYLLFVHTCSEKRVVADRVALELGSIHPRP 119 Query: 121 PALRVFDAGMGDGTVLARVLRAMHGRFPHMPFYVAGKELSLEDVRLTLDKVPDRLFEHPA 180 PALRVFDAG GDGTVLARVLRAMHGRFPHMPFYVAGKELS+EDVRLTLDKVPDRLFEHPA Sbjct: 120 PALRVFDAGCGDGTVLARVLRAMHGRFPHMPFYVAGKELSVEDVRLTLDKVPDRLFEHPA 179 Query: 181 SVFVFTNMYYAEAPWLTPKNSAAAASMIWHEVALRGASSGEFEAQIAELGPFLEQNWRAN 240 +VFV TNMY+AEAPWLTP + AAA MIWHEVALRGASSGEFE QIAEL PFL+ NWRA+ Sbjct: 180 TVFVLTNMYFAEAPWLTPASPTAAAGMIWHEVALRGASSGEFETQIAELAPFLQDNWRAS 239 Query: 241 LSPGNAMPIYERPVALVLYRDDHRFLLDSIIPRAGRTEANFDLVIASQPYRAKSSVNFRA 300 +SP MP+YERP A+VLYR+DHRFLLDS+IPRAGRTEANFDL+IASQPYRAKSSVNFRA Sbjct: 240 VSPRTGMPVYERPAAIVLYREDHRFLLDSVIPRAGRTEANFDLIIASQPYRAKSSVNFRA 299 Query: 301 KRIIAPLARALRGGGRLIGIHSHGGDPGLEMIQAVWPGENPFAVSRHEILRAVKYELGSA 360 KRIIAPLARALR GGRLIGIHSHGGDPGLE+IQ+VWP ENPF+VSRHE+LRAVKYELGSA Sbjct: 300 KRIIAPLARALRAGGRLIGIHSHGGDPGLEIIQSVWPEENPFSVSRHELLRAVKYELGSA 359 Query: 361 GRELNFNAYADNRSIFRYDMEALPNEVTGSIGTSTAFAAWNAAVYVAQIEDERLTETTEN 420 GR+LNFNAYAD+RSIFRYDMEALPNEVTGSIG STAFAAWNAAVYVAQIED+RLTETT+ Sbjct: 360 GRDLNFNAYADSRSIFRYDMEALPNEVTGSIGNSTAFAAWNAAVYVAQIEDDRLTETTQG 419 Query: 421 GRALEATREVLRKHNGLWFYDESYVISRRRD 451 G+ L+ATREVLRKH+GLWFYDESYVISRRRD Sbjct: 420 GQYLDATREVLRKHSGLWFYDESYVISRRRD 450 >ref|YP_568733.1| hypothetical protein RPD_1595 [Rhodopseudomonas palustris BisB5] gb|ABE38832.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5] Length = 451 Score = 802 bits (2072), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/451 (84%), Positives = 421/451 (93%), Gaps = 1/451 (0%) Query: 1 MKNDEILSQITDFCRRSDMAETTFGRRAVNDGKLVYRLREGKRITIDTLDRINAFIATST 60 MKND++LS+I+D+CR++ MAETTFGRRAVNDGKLV RLREGKRIT+DTL+RI AF+A Sbjct: 2 MKNDQLLSRISDYCRQAGMAETTFGRRAVNDGKLVQRLREGKRITVDTLERIEAFVAAGL 61 Query: 61 PGGVAPPRGLVVPPEKRDPRGNFRFFENRQRYLLFVHTCSEKRVIADRVALELAAIHPRP 120 G PPRGLVVPPE+RD RGNFRFFENRQ+YLLFVHTCSEKRV+A RVALELA+IHPRP Sbjct: 62 -GTAPPPRGLVVPPERRDARGNFRFFENRQKYLLFVHTCSEKRVVAGRVALELASIHPRP 120 Query: 121 PALRVFDAGMGDGTVLARVLRAMHGRFPHMPFYVAGKELSLEDVRLTLDKVPDRLFEHPA 180 PALRVFDAG GDGTVLARVLRAMHGRFPHMPFYVAGKELS+EDVRLTLDKVPDRLFEHPA Sbjct: 121 PALRVFDAGCGDGTVLARVLRAMHGRFPHMPFYVAGKELSVEDVRLTLDKVPDRLFEHPA 180 Query: 181 SVFVFTNMYYAEAPWLTPKNSAAAASMIWHEVALRGASSGEFEAQIAELGPFLEQNWRAN 240 +VFV TNMYYAEAPWLTP + AAA MIWHEV LRGASSGEFE QIAEL PFL++NWRA+ Sbjct: 181 TVFVLTNMYYAEAPWLTPASPTAAAGMIWHEVPLRGASSGEFETQIAELAPFLQENWRAS 240 Query: 241 LSPGNAMPIYERPVALVLYRDDHRFLLDSIIPRAGRTEANFDLVIASQPYRAKSSVNFRA 300 +SP + MP+YERPVA+VLYR+DHRFLLDS+IPRAGRTEANFDL+IASQPYRAKSSVNFRA Sbjct: 241 VSPRSGMPVYERPVAIVLYREDHRFLLDSVIPRAGRTEANFDLIIASQPYRAKSSVNFRA 300 Query: 301 KRIIAPLARALRGGGRLIGIHSHGGDPGLEMIQAVWPGENPFAVSRHEILRAVKYELGSA 360 KRIIAPLARALR GGRLIGIHSHG DPGLE++Q+VWP ENPF+VSRHE+LRAVKYELGSA Sbjct: 301 KRIIAPLARALRAGGRLIGIHSHGHDPGLEIVQSVWPEENPFSVSRHELLRAVKYELGSA 360 Query: 361 GRELNFNAYADNRSIFRYDMEALPNEVTGSIGTSTAFAAWNAAVYVAQIEDERLTETTEN 420 GR+LNFNAYAD+RSIFRYDMEALPNEVTGSIG STAFAAWNAAVYVAQIED+RLTE T+ Sbjct: 361 GRDLNFNAYADSRSIFRYDMEALPNEVTGSIGNSTAFAAWNAAVYVAQIEDDRLTEMTQG 420 Query: 421 GRALEATREVLRKHNGLWFYDESYVISRRRD 451 G+ L+ATREVLRKH+GLWFYDESYVISRRRD Sbjct: 421 GQYLDATREVLRKHSGLWFYDESYVISRRRD 451 >ref|NP_772586.1| hypothetical protein bll5946 [Bradyrhizobium japonicum USDA 110] dbj|BAC51211.1| bll5946 [Bradyrhizobium japonicum USDA 110] Length = 479 Score = 800 bits (2067), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/451 (86%), Positives = 422/451 (93%) Query: 1 MKNDEILSQITDFCRRSDMAETTFGRRAVNDGKLVYRLREGKRITIDTLDRINAFIATST 60 MKNDEILSQIT+FCR++DMAE+TFGRRAVNDGKLV+RLREGKRITIDTL+RI A++A S Sbjct: 29 MKNDEILSQITEFCRKADMAESTFGRRAVNDGKLVHRLREGKRITIDTLERIQAYMAASM 88 Query: 61 PGGVAPPRGLVVPPEKRDPRGNFRFFENRQRYLLFVHTCSEKRVIADRVALELAAIHPRP 120 GGV PPRGL VPPEKRDPRGNFRFFENRQ+YLLFVHTCSEKRVIADRVALELAAIHPRP Sbjct: 89 AGGVPPPRGLQVPPEKRDPRGNFRFFENRQKYLLFVHTCSEKRVIADRVALELAAIHPRP 148 Query: 121 PALRVFDAGMGDGTVLARVLRAMHGRFPHMPFYVAGKELSLEDVRLTLDKVPDRLFEHPA 180 PALR+FDAG+GDGTVLARVLRA H RFPHMPFYVAGKELSLED+RLTL+KVPDR+FEHPA Sbjct: 149 PALRLFDAGVGDGTVLARVLRATHQRFPHMPFYVAGKELSLEDLRLTLEKVPDRIFEHPA 208 Query: 181 SVFVFTNMYYAEAPWLTPKNSAAAASMIWHEVALRGASSGEFEAQIAELGPFLEQNWRAN 240 SVFVFTNM+Y+EAPWLTP + AAAA+ +WHEV LRGASSGEFE QIAEL PFLEQNWRA Sbjct: 209 SVFVFTNMFYSEAPWLTPASPAAAAATVWHEVPLRGASSGEFEQQIAELRPFLEQNWRAA 268 Query: 241 LSPGNAMPIYERPVALVLYRDDHRFLLDSIIPRAGRTEANFDLVIASQPYRAKSSVNFRA 300 +SP AMP+YERPV LVLYR+DHRFLLDS IPR G+TEANFDLVIASQPYRA SSVNFRA Sbjct: 269 ISPRTAMPLYERPVVLVLYREDHRFLLDSTIPRPGQTEANFDLVIASQPYRALSSVNFRA 328 Query: 301 KRIIAPLARALRGGGRLIGIHSHGGDPGLEMIQAVWPGENPFAVSRHEILRAVKYELGSA 360 KRIIAPLARALR GGRLIGIHSHG DPG+EMIQA+WPGENPFAVSRHE+LRAVKYELGS Sbjct: 329 KRIIAPLARALRPGGRLIGIHSHGHDPGMEMIQAIWPGENPFAVSRHELLRAVKYELGSL 388 Query: 361 GRELNFNAYADNRSIFRYDMEALPNEVTGSIGTSTAFAAWNAAVYVAQIEDERLTETTEN 420 GR+LNFNAYADNRSIFRYDMEALPNEVTG+IGTSTAFAAWNAAVYVAQIED+RL E T+N Sbjct: 389 GRDLNFNAYADNRSIFRYDMEALPNEVTGTIGTSTAFAAWNAAVYVAQIEDDRLAEMTQN 448 Query: 421 GRALEATREVLRKHNGLWFYDESYVISRRRD 451 GR L+A R+VLRK+NGLWF DESYVISRRRD Sbjct: 449 GRTLDAARDVLRKYNGLWFLDESYVISRRRD 479 >ref|YP_001993516.1| hypothetical protein Rpal_4547 [Rhodopseudomonas palustris TIE-1] gb|ACF03041.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1] Length = 450 Score = 791 bits (2042), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/451 (84%), Positives = 417/451 (92%), Gaps = 1/451 (0%) Query: 1 MKNDEILSQITDFCRRSDMAETTFGRRAVNDGKLVYRLREGKRITIDTLDRINAFIATST 60 M ND++L++I+D+CR++ MAETTFGRRAVNDGKLVYRLREGKRIT+DTL+RI AF+A Sbjct: 1 MNNDQLLTRISDYCRQAGMAETTFGRRAVNDGKLVYRLREGKRITLDTLERIEAFVAAGL 60 Query: 61 PGGVAPPRGLVVPPEKRDPRGNFRFFENRQRYLLFVHTCSEKRVIADRVALELAAIHPRP 120 G PPRGLVVP E+RDPR NFRFFENRQ+YLLFVHTC EKRV+ADRVALELA IHPRP Sbjct: 61 -GVAPPPRGLVVPLERRDPRSNFRFFENRQKYLLFVHTCGEKRVVADRVALELANIHPRP 119 Query: 121 PALRVFDAGMGDGTVLARVLRAMHGRFPHMPFYVAGKELSLEDVRLTLDKVPDRLFEHPA 180 PALRVFDAG GDGTVLARVLRAMHGRFP +PFYV+GKELS+ED+RLTLDKVPDRLFEHPA Sbjct: 120 PALRVFDAGCGDGTVLARVLRAMHGRFPQIPFYVSGKELSVEDLRLTLDKVPDRLFEHPA 179 Query: 181 SVFVFTNMYYAEAPWLTPKNSAAAASMIWHEVALRGASSGEFEAQIAELGPFLEQNWRAN 240 SVFVFTNM YAEAPWLTP +SAAAA MIWHEVALRGASSGEFE QIAEL PFL+ NWRAN Sbjct: 180 SVFVFTNMNYAEAPWLTPASSAAAAGMIWHEVALRGASSGEFETQIAELAPFLQDNWRAN 239 Query: 241 LSPGNAMPIYERPVALVLYRDDHRFLLDSIIPRAGRTEANFDLVIASQPYRAKSSVNFRA 300 +SP MP+YERPVA+VLYR+DHRFLLD++IPRAGRTEANFDL+IASQPYRAKSSVNFRA Sbjct: 240 VSPRTGMPVYERPVAIVLYREDHRFLLDAVIPRAGRTEANFDLIIASQPYRAKSSVNFRA 299 Query: 301 KRIIAPLARALRGGGRLIGIHSHGGDPGLEMIQAVWPGENPFAVSRHEILRAVKYELGSA 360 KRIIAPLARALR GGRLIGIHSHG DPGLE++Q++WP ENPF+VSRHE+LRAVKYELGSA Sbjct: 300 KRIIAPLARALRPGGRLIGIHSHGHDPGLEIVQSIWPDENPFSVSRHELLRAVKYELGSA 359 Query: 361 GRELNFNAYADNRSIFRYDMEALPNEVTGSIGTSTAFAAWNAAVYVAQIEDERLTETTEN 420 GR+LNFNAYADNRSIFRYDMEALPNEVTG IG STAFAAWNAAVYVAQIED+RLTE T + Sbjct: 360 GRDLNFNAYADNRSIFRYDMEALPNEVTGPIGNSTAFAAWNAAVYVAQIEDDRLTEVTRD 419 Query: 421 GRALEATREVLRKHNGLWFYDESYVISRRRD 451 G+ LEATREVLRKH+GLWF DESYVISRRRD Sbjct: 420 GQYLEATREVLRKHSGLWFNDESYVISRRRD 450