BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0008.0004.p (280 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08630730.1| FkbM family domain-containing methyltransfera... 345 6e-93 ref|YP_468310.1| lipolysaccharide tri-O-methyl-fucosylation prot... 218 6e-55 ref|YP_001801938.1| hypothetical protein cce_0521 [Cyanothece sp... 194 1e-47 ref|YP_846737.1| FkbM family methyltransferase [Syntrophobacter ... 179 3e-43 ref|YP_389384.2| FkbM family methyltransferase [Desulfovibrio al... 102 7e-20 >ref|ZP_08630730.1| FkbM family domain-containing methyltransferase [Bradyrhizobiaceae bacterium SG-6C] gb|EGP06584.1| FkbM family domain-containing methyltransferase [Bradyrhizobiaceae bacterium SG-6C] Length = 280 Score = 345 bits (884), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 167/278 (60%), Positives = 207/278 (74%), Gaps = 1/278 (0%) Query: 1 MKTTHKIGAARLMYRAVRAGRSLLGRSDRQIAVRNGINYDLDLAQGIDFAIYLGNIYERQ 60 MKT HKI AR Y+ V R+ +G SD I +R+G+ YDLDL+QGIDFAI+LGN++E Sbjct: 1 MKTVHKIALARAGYKIVNRARAAMGLSDECIVIRDGVKYDLDLSQGIDFAIFLGNMFEPG 60 Query: 61 TRATLRELVKPGSLVLDIGANVGAHTLHLAHLVGPEGRVLAFEPTAFAFRKLNRNLELNP 120 TR LR+LVKP +LVLDIGAN+GAH+L LA LVGP GRVL FEPT FAF KL+RNLELNP Sbjct: 61 TRNALRKLVKPSALVLDIGANIGAHSLLLAQLVGPSGRVLCFEPTDFAFAKLSRNLELNP 120 Query: 121 ELQKRVIPLHCFLTGKDAEPVPSAIYSSWPLTNESGLHAKHLGREMRTEAAQARRLDDVL 180 +L RV P +CFL +D VP I+SSWPL+ + GLHAKHLG+ M T A AR +D VL Sbjct: 121 DLAGRVTPFYCFLAAEDDAEVPETIFSSWPLSQQDGLHAKHLGQAMPTNIAHARSIDGVL 180 Query: 181 AQFPDLRVQLVKLDVDGYECDVLRGASKLMKDVKPIFVMELAPYVLEERGTSLEELFSYF 240 A+ + VQL+K+DVDG+E VLRG + L+ +P F+MEL+PYVLEERG+SLEEL SYF Sbjct: 181 AELGNPTVQLIKMDVDGFETGVLRGCTTLLHS-RPTFLMELSPYVLEERGSSLEELLSYF 239 Query: 241 IPNGYRFFDEKHGNALPSSAAELGRMVSDGACINAIAR 278 P+GYRF+ E+ LPSS +L ++V DGA IN IAR Sbjct: 240 APHGYRFYHERSERLLPSSPKDLRQLVGDGASINVIAR 277 >ref|YP_468310.1| lipolysaccharide tri-O-methyl-fucosylation protein (SAM-dependent methyltransferase) [Rhizobium etli CFN 42] gb|AAK11638.2| LpeA [Rhizobium etli] gb|ABC89583.1| lipolysaccharide tri-O-methyl-fucosylation protein (SAM-dependent methyltransferase protein) [Rhizobium etli CFN 42] Length = 286 Score = 218 bits (556), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 118/277 (42%), Positives = 164/277 (59%) Query: 1 MKTTHKIGAARLMYRAVRAGRSLLGRSDRQIAVRNGINYDLDLAQGIDFAIYLGNIYERQ 60 + T++KI AR + R V R LG R GIN+ LDL G+DFAIYL +E + Sbjct: 2 LSTSNKILIARYLSRVVLFVRGCLGLPATVQVRRRGINWSLDLKDGVDFAIYLLGGFEVR 61 Query: 61 TRATLRELVKPGSLVLDIGANVGAHTLHLAHLVGPEGRVLAFEPTAFAFRKLNRNLELNP 120 T +ELV+ G++VLDIGANVG+HTL LA LVG G+V++FEPTA AF K N+ LNP Sbjct: 62 TLDRYKELVRDGNIVLDIGANVGSHTLPLAELVGGTGKVISFEPTAHAFGKQKTNITLNP 121 Query: 121 ELQKRVIPLHCFLTGKDAEPVPSAIYSSWPLTNESGLHAKHLGREMRTEAAQARRLDDVL 180 L +R+ L +E +P A+YSSWPL LH++H GR M T+ A+ LD++L Sbjct: 122 ILAQRIDAHQMMLMASASETMPEAVYSSWPLEVAEDLHSEHHGRLMSTQGARLNTLDEIL 181 Query: 181 AQFPDLRVQLVKLDVDGYECDVLRGASKLMKDVKPIFVMELAPYVLEERGTSLEELFSYF 240 + +V VKLDVDG E +VL GA +++ KP ++ELAPYV + ++L + Sbjct: 182 RELGVDKVDFVKLDVDGNELEVLLGAKATLEEFKPRIMLELAPYVYAGNPENFDQLLTLL 241 Query: 241 IPNGYRFFDEKHGNALPSSAAELGRMVSDGACINAIA 277 GY D G LP E+ M+++GA +N +A Sbjct: 242 WEGGYEIGDVASGRKLPQDVGEVRTMIAEGAGMNVMA 278 >ref|YP_001801938.1| hypothetical protein cce_0521 [Cyanothece sp. ATCC 51142] gb|ACB49872.1| hypothetical protein cce_0521 [Cyanothece sp. ATCC 51142] Length = 284 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 113/279 (40%), Positives = 155/279 (55%), Gaps = 7/279 (2%) Query: 3 TTHKIGAARLMYRAVRAGRSLLGRSDRQIAVRNGINYDLDLAQGIDFAIYLGNIYERQTR 62 T KI ARL+ R + RS G S R GI + LDL +GID AIYL N+YE +T Sbjct: 5 TEGKIKIARLLSRLIVTIRSWFGLSPVTRVKRRGIKWFLDLREGIDLAIYL-NVYEPETL 63 Query: 63 ATLRELVKPGSLVLDIGANVGAHTLHLAHLVGPEGRVLAFEPTAFAFRKLNRNLELNPEL 122 + + L+KPG +VLDIGAN+GA TL LA VG G+V++FEPT +A+ KL RNL LNP+L Sbjct: 64 NSFKSLIKPGDVVLDIGANIGAMTLPLAQAVGETGQVISFEPTIWAYEKLQRNLVLNPQL 123 Query: 123 QKRVIPLHCFLTGKDAEPVPSAIYSSWPLT----NESGLHAKHLGREMRTEAAQARRLDD 178 RV L + P P+ +YSSW LT N +H H G+ M T+ + LD+ Sbjct: 124 INRVQAEQIMLLDRGENP-PALVYSSWDLTAEVDNNPSIHPLHQGKLMTTDGVKGISLDE 182 Query: 179 VLAQFPDLRVQLVKLDVDGYECDVLRGASKLMKDVKPIFVMELAPYVLEERGTSLEELFS 238 Q ++ L+KLDVDGYE VL GA K ++ +P +ME+A YV EER ++EL Sbjct: 183 YCEQQRIEQIDLIKLDVDGYELTVLNGAKKTLRQYRPKIIMEMALYVQEER-EQIDELLI 241 Query: 239 YFIPNGYRFFDEKHGNALPSSAAELGRMVSDGACINAIA 277 Y+ + + + L ++ IN +A Sbjct: 242 TLQEADYQLVQLTNSQPIAMNQTALEKLCHKAGGINVLA 280 >ref|YP_846737.1| FkbM family methyltransferase [Syntrophobacter fumaroxidans MPOB] gb|ABK18302.1| methyltransferase FkbM family [Syntrophobacter fumaroxidans MPOB] Length = 282 Score = 179 bits (455), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 107/279 (38%), Positives = 149/279 (53%), Gaps = 2/279 (0%) Query: 1 MKTTHKIGAARLMYRAVRAGRSLLGRSDRQIAVRNGINYDLDLAQGIDFAIYLGNIYERQ 60 + T K+ A + R + A R L G+ AVR G+ + LDL +GID A+YLG +YE + Sbjct: 3 LSTRQKVFIAAQLARGLLAVRRLAGKGPDVQAVRRGVKWRLDLREGIDLALYLG-VYENE 61 Query: 61 TRATLRELVKPGSLVLDIGANVGAHTLHLAHLVGPEGRVLAFEPTAFAFRKLNRNLELNP 120 T T+ ++ G +VLDIGAN+GAHTL +A +GP GRVLAFEPT++AF KL N+ LN Sbjct: 62 TAQTIAREIREGWVVLDIGANIGAHTLPIADRIGPGGRVLAFEPTSYAFEKLRTNISLNA 121 Query: 121 ELQKRVIPLHCFLTGKDAEPVPSAIYSSWPLTNESGLHAKHLGREMRTEAAQARRLDDVL 180 L +R+ L K IYSSWPLT+ +H GR M TE A A L+ V+ Sbjct: 122 ALAERIDCHQTVLVDKPPTAPLQPIYSSWPLTDTVDVHPVLRGRLMSTEGAAAATLEHVV 181 Query: 181 AQFPDLRVQLVKLDVDGYECDVLRGASKLMKDVKPIFVMELAPYVLEERGT-SLEELFSY 239 R+ +KLDVDG E VL GA + + +P +ME P++ GT L Sbjct: 182 QVAQLRRLDFIKLDVDGNESMVLEGARETLARFRPTIIMEFCPHLHHRHGTDGFPALLGL 241 Query: 240 FIPNGYRFFDEKHGNALPSSAAELGRMVSDGACINAIAR 278 GYR ++ G +P + M G ++ + R Sbjct: 242 LRDLGYRAETKREGRDVPLIPESVEAMCPGGGSVDLLLR 280 >ref|YP_389384.2| FkbM family methyltransferase [Desulfovibrio alaskensis G20] gb|ABB39689.2| methyltransferase FkbM family [Desulfovibrio alaskensis G20] Length = 287 Score = 102 bits (254), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 69/210 (32%), Positives = 108/210 (51%), Gaps = 8/210 (3%) Query: 41 LDLAQGIDFAIYLGNIYERQTRATLRELVKPGSLVLDIGANVGAHTLHLAHLVGPEGRVL 100 LD +Q +D I YE + +++ VK G VLDIG N+G +T+ + +VG G+V+ Sbjct: 51 LDESQYVDKCIIQHGKYESASTNLVQQFVKEGQTVLDIGGNIGYYTVMFSKIVGRSGKVI 110 Query: 101 AFEPTAFAFRKLNRNLELNPELQKRVIPLHCFLTGKDAEPVPSAIYSSWPLTNESGLHAK 160 FEPTA L +N++ N + P L+ K AE + +I SS + LHA Sbjct: 111 TFEPTAHYRSILEKNVQENQINNVLIRPEG--LSDK-AEKLTISIGSS-----TATLHAP 162 Query: 161 HLGREMRTEAAQARRLDDVLAQFPDLRVQLVKLDVDGYECDVLRGASKLMKDVKPIFVME 220 + EA Q RLDD++ Q ++ +K+DVDG+E VLRGA + +K KP+ ++E Sbjct: 163 EGQQIDSYEAIQLARLDDLVEQLDITKLDFIKIDVDGHEPSVLRGAQQTIKKFKPLILLE 222 Query: 221 LAPYVLEERGTSLEELFSYFIPNGYRFFDE 250 ++ E + + Y Y +DE Sbjct: 223 VSHLHYLEGNVFAWDFYDYLSSLNYYIYDE 252