BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0016.p         (96 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_577312.1| hypothetical protein Nham_2054 [Nitrobacter ham...   143   1e-32
ref|ZP_01048244.1| hypothetical protein NB311A_19335 [Nitrobacte...   139   2e-31
ref|NP_771242.1| hypothetical protein bsl4602 [Bradyrhizobium ja...   138   4e-31
ref|YP_318127.1| hypothetical protein Nwi_1514 [Nitrobacter wino...   136   1e-30
ref|YP_001991920.1| hypothetical protein Rpal_2937 [Rhodopseudom...   134   6e-30

>ref|YP_577312.1| hypothetical protein Nham_2054 [Nitrobacter hamburgensis X14]
 gb|ABE62852.1| protein of unknown function DUF339 [Nitrobacter hamburgensis X14]
          Length = 96

 Score =  143 bits (360), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 72/96 (75%), Positives = 78/96 (81%)

Query: 1  MTGSTRSSRGLDDRRKRLLFRCWHRGTREMDLILGRFADATIGELSDHELGELEHLIEVP 60
          MTGSTRSS GLDDRRKRLLFRCWHRG RE+DLILGRFADA IG L+D EL +LE LIEVP
Sbjct: 1  MTGSTRSSDGLDDRRKRLLFRCWHRGMREVDLILGRFADAEIGSLTDSELIDLESLIEVP 60

Query: 61 DPDLYAALTGDKVLPAEYETALFARIKAFRVADPSA 96
          DPDLYAAL+G   L  EY TALF RIK+FR +   A
Sbjct: 61 DPDLYAALSGGAPLAPEYRTALFNRIKSFRTSGQGA 96


>ref|ZP_01048244.1| hypothetical protein NB311A_19335 [Nitrobacter sp. Nb-311A]
 gb|EAQ33783.1| hypothetical protein NB311A_19335 [Nitrobacter sp. Nb-311A]
          Length = 95

 Score =  139 bits (349), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 68/90 (75%), Positives = 74/90 (82%)

Query: 1  MTGSTRSSRGLDDRRKRLLFRCWHRGTREMDLILGRFADATIGELSDHELGELEHLIEVP 60
          MTGSTRSS+GLDDRRKRLL+RCWHRG REMDLILGRF D  IG L+D EL +LE LIEVP
Sbjct: 1  MTGSTRSSQGLDDRRKRLLYRCWHRGMREMDLILGRFVDEEIGSLTDGELNDLESLIEVP 60

Query: 61 DPDLYAALTGDKVLPAEYETALFARIKAFR 90
          DPDLYAAL     L +EY TALF RIK+FR
Sbjct: 61 DPDLYAALNDGAPLASEYRTALFDRIKSFR 90


>ref|NP_771242.1| hypothetical protein bsl4602 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC49867.1| bsl4602 [Bradyrhizobium japonicum USDA 110]
          Length = 96

 Score =  138 bits (347), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 77/93 (82%), Positives = 82/93 (88%)

Query: 1  MTGSTRSSRGLDDRRKRLLFRCWHRGTREMDLILGRFADATIGELSDHELGELEHLIEVP 60
          MTG+TRSS GLDDRRKRLLFRCWHRGTREMDLILGRFADA IG LSD EL ELEHL+EV 
Sbjct: 1  MTGTTRSSNGLDDRRKRLLFRCWHRGTREMDLILGRFADAEIGNLSDAELDELEHLLEVN 60

Query: 61 DPDLYAALTGDKVLPAEYETALFARIKAFRVAD 93
          DPDLYAA+TGDKVLPA+   ALFARIKAF + D
Sbjct: 61 DPDLYAAITGDKVLPADVTGALFARIKAFPITD 93


>ref|YP_318127.1| hypothetical protein Nwi_1514 [Nitrobacter winogradskyi Nb-255]
 gb|ABA04775.1| Protein of unknown function DUF339 [Nitrobacter winogradskyi
           Nb-255]
          Length = 122

 Score =  136 bits (342), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 66/90 (73%), Positives = 75/90 (83%)

Query: 1   MTGSTRSSRGLDDRRKRLLFRCWHRGTREMDLILGRFADATIGELSDHELGELEHLIEVP 60
           MTGSTRSS G+DDRRKRLL+RCWHRG REMDLILGRF D  IG L++ EL +LE+LIEVP
Sbjct: 28  MTGSTRSSEGMDDRRKRLLYRCWHRGMREMDLILGRFVDEEIGSLTEAELKDLENLIEVP 87

Query: 61  DPDLYAALTGDKVLPAEYETALFARIKAFR 90
           DPDLYAAL+    L +EY TALF RIK+FR
Sbjct: 88  DPDLYAALSDGAPLASEYRTALFDRIKSFR 117


>ref|YP_001991920.1| hypothetical protein Rpal_2937 [Rhodopseudomonas palustris TIE-1]
 gb|ACF01445.1| protein of unknown function DUF339 [Rhodopseudomonas palustris
          TIE-1]
          Length = 96

 Score =  134 bits (336), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 67/96 (69%), Positives = 75/96 (78%)

Query: 1  MTGSTRSSRGLDDRRKRLLFRCWHRGTREMDLILGRFADATIGELSDHELGELEHLIEVP 60
          MTG+TRSS GLDDRRKRLLFRCWHRGTREMDLILG+FADA IG LS+ EL ELE LIEV 
Sbjct: 1  MTGTTRSSGGLDDRRKRLLFRCWHRGTREMDLILGQFADAEIGTLSEAELDELERLIEVN 60

Query: 61 DPDLYAALTGDKVLPAEYETALFARIKAFRVADPSA 96
          D DLYAA+ G   LPAE++  LF RIK +   D + 
Sbjct: 61 DHDLYAAVAGGDTLPAEFKGGLFERIKTYGHQDGTV 96